-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
2
-
-
33846072878
-
The ribosomal database project (RDP-II): Introducing myRDP space and quality controlled public data
-
Database Issue
-
Cole JR, Chai B, Farris RJ, Wang Q, Kulam-Syed-Mohideen AS, et al. 2007. The ribosomal database project (RDP-II): Introducing myRDP space and quality controlled public data. Nucleic Acids Res. 35(Database issue):D169-D172.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam-Syed-Mohideen, A.S.5
-
3
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, et al. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72(7):5069-72.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
-
4
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, et al. 2008. Functional metagenomic profiling of nine biomes. Nature 452(7187):629-632.
-
(2008)
Nature
, vol.452
, Issue.7187
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
-
5
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, et al. 2006. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics. 7:57.
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
-
6
-
-
35948953592
-
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria archaea, fungi, and viruses in soil
-
Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, et al. 2007. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria archaea, fungi, and viruses in soil. Appl. Environ. Microbiol. 73(21):7059-7066.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, Issue.21
, pp. 7059-7066
-
-
Fierer, N.1
Breitbart, M.2
Nulton, J.3
Salamon, P.4
Lozupone, C.5
-
7
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Database Issue
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. 2004. The KEGG resource for deciphering the genome. Nucleic Acids Res. 1:32(Database issue):D277-D280.
-
(2004)
Nucleic Acids Res
, vol.1
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
8
-
-
45749154807
-
-
Kottmann R, Gray T, Murphy S, Kagan L, Kravitz S, et al. 2008. A standard MIGS/MIMS compliant XML Schema: Toward the development of the Genomic Contextual Data Markup Language (GCDML) OMICS. 12(2):115-121.
-
(2008)
A standard MIGS/MIMS compliant XML Schema: Toward the development of the Genomic Contextual Data Markup Language (GCDML) OMICS
, vol.12
, Issue.2
, pp. 115-121
-
-
Kottmann, R.1
Gray, T.2
Murphy, S.3
Kagan, L.4
Kravitz, S.5
-
9
-
-
33747877444
-
Finding novel genes in bacterial communities isolated from the environment
-
Krause L, Diaz NN, Bartels D, Edwards RA, Puhler A, et al. 2006. Finding novel genes in bacterial communities isolated from the environment. Bioinformatics 22(14):e281-e289.
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Krause, L.1
Diaz, N.N.2
Bartels, D.3
Edwards, R.A.4
Puhler, A.5
-
10
-
-
75549086985
-
ACLAME: A CLAssification of Mobile genetic Elements, update 2010
-
Database Issue
-
Leplae R, Lima-Mendez G, Toussaint A. 2010. ACLAME: A CLAssification of Mobile genetic Elements, update 2010. Nucleic Acids Res. 38(Database issue):D57-D61.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Leplae, R.1
Lima-Mendez, G.2
Toussaint, A.3
-
11
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
-
12
-
-
38549101119
-
The integrated microbial genomes (IMG) system in 2007 Data content and analysis tool extensions
-
Database Issue
-
Markowitz VM, Szeto E, Palaniappan K, Grechkin Y, Chu K, et al. 2008. The integrated microbial genomes (IMG) system in 2007: Data content and analysis tool extensions. Nucleic Acids Res. 36(Database issue):D528-D533.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Markowitz, V.M.1
Szeto, E.2
Palaniappan, K.3
Grechkin, Y.4
Chu, K.5
-
13
-
-
33845957530
-
Accurate phylogenetic classification of variable-length DNA fragments
-
McHardy AC, Martin HG, Tsirigos A, Hugenholtz P, Rigoutsos I. 2007. Accurate phylogenetic classification of variable-length DNA fragments. Nat. Methods 4(1):63-72.
-
(2007)
Nat. Methods
, vol.4
, Issue.1
, pp. 63-72
-
-
McHardy, A.C.1
Martin, H.G.2
Tsirigos, A.3
Hugenholtz, P.4
Rigoutsos, I.5
-
14
-
-
73349120997
-
FIGfams: Yet another set of protein families
-
Meyer F, Overbeek R, Rodriguez A. 2009. FIGfams: Yet another set of protein families. Nucleic Acids Res. 37(20):6643-6654.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.20
, pp. 6643-6654
-
-
Meyer, F.1
Overbeek, R.2
Rodriguez, A.3
-
15
-
-
53549118607
-
The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. 2008. The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics. 9:336.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 336
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
-
16
-
-
38949113807
-
Bacterial carbon processing by generalist species in the coastal ocean
-
Mou XSS, Edwards RA, Hodson RE, Moran MA. 2008. Bacterial carbon processing by generalist species in the coastal ocean. Nature 451(7179):708-711.
-
(2008)
Nature
, vol.451
, Issue.7179
, pp. 708-711
-
-
Mou, X.S.S.1
Edwards, R.A.2
Hodson, R.E.3
Moran, M.A.4
-
17
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, et al. 2005. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33(17):5691-5702.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.17
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
-
18
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, et al. 2007. SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35(21):7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.21
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
-
19
-
-
0030298490
-
Real-time DNA sequencing using detection of pyrophosphate release
-
Ronaghi M, Karamohamed S, Pettersson B, Uhlen M, Nyren P. 1996. Real-time DNA sequencing using detection of pyrophosphate release. Anal. Biochem. 242:84-89.
-
(1996)
Anal. Biochem.
, vol.242
, pp. 84-89
-
-
Ronaghi, M.1
Karamohamed, S.2
Pettersson, B.3
Uhlen, M.4
Nyren, P.5
-
20
-
-
0032540905
-
A sequencing method based on real-time pyrophosphate.
-
Ronaghi M, Uhlen M, Nyren P. 1998. A sequencing method based on real-time pyrophosphate. Science 281:363, 365.
-
(1998)
Science
, vol.281
, pp. 363-365
-
-
Ronaghi, M.1
Uhlen, M.2
Nyren, P.3
-
21
-
-
75549088687
-
Database resources of the National Center for Biotechnology Information
-
Database Issue
-
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. 2010. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38(Database issue): D5-D16.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
-
22
-
-
75849153303
-
The Universal Protein Resource (UniProt)
-
Database Issue. UniProt Consortium 2010
-
UniProt Consortium. 2010. The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res. 38(Database issue):D142- D148.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
|