메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

Meta-analysis of molecular response of kidney to ischemia reperfusion injury for the identification of new candidate genes

Author keywords

Bioinformatics; Ischemia reperfusion injury; Kidney; Meta analysis

Indexed keywords

ACTIVATING TRANSCRIPTION FACTOR 3; BINDING PROTEIN; CLUSTERIN; CYCLIN DEPENDENT KINASE INHIBITOR 1A; HEME OXYGENASE; INTERCELLULAR ADHESION MOLECULE 1; LECTIN; LIPOCORTIN 1; METALLOPROTEINASE; METALLOPROTEINASE INHIBITOR; NEUTROPHIL GELATINASE ASSOCIATED LIPOCALIN; OSTEOPONTIN; PROTEIN TYROSINE KINASE;

EID: 84886024037     PISSN: None     EISSN: 14712369     Source Type: Journal    
DOI: 10.1186/1471-2369-14-231     Document Type: Article
Times cited : (24)

References (33)
  • 1
    • 0030804113 scopus 로고    scopus 로고
    • Effects of initial ischemia/reperfusion injury on the transplanted kidney
    • DOI 10.1097/00007890-199710150-00001
    • Effects of initial ischemia/reperfusion injury on the transplanted kidney. Tilney NL, Guttmann RD, Transplantation 1997 64 7 945 947 10.1097/00007890-199710150-00001 9381538 (Pubitemid 27446755)
    • (1997) Transplantation , vol.64 , Issue.7 , pp. 945-947
    • Tilney, N.L.1    Guttmann, R.D.2
  • 2
    • 0029114163 scopus 로고
    • High survival rates of kidney transplants from spousal and living unrelated donors
    • 10.1056/NEJM199508103330601 7609748
    • High survival rates of kidney transplants from spousal and living unrelated donors. Terasaki PI, Cecka JM, Gjertson DW, Takemoto S, N Engl J Med 1995 333 6 333 336 10.1056/NEJM199508103330601 7609748
    • (1995) N Engl J Med , vol.333 , Issue.6 , pp. 333-336
    • Terasaki, P.I.1    Cecka, J.M.2    Gjertson, D.W.3    Takemoto, S.4
  • 5
    • 80052285990 scopus 로고    scopus 로고
    • Diannexin protects against renal ischemia reperfusion injury and targets phosphatidylserines in ischemic tissue
    • 10.1371/journal.pone.0024276 21918686
    • Diannexin protects against renal ischemia reperfusion injury and targets phosphatidylserines in ischemic tissue. Wever KE, Wagener FA, Frielink C, Boerman OC, Scheffer GJ, Allison A, Masereeuw R, Rongen GA, PLoS One 2011 6 8 24276 10.1371/journal.pone.0024276 21918686
    • (2011) PLoS One , vol.6 , Issue.8 , pp. 524276
    • Wever, K.E.1    Wagener, F.A.2    Frielink, C.3    Boerman, O.C.4    Scheffer, G.J.5    Allison, A.6    Masereeuw, R.7    Rongen, G.A.8
  • 6
    • 32844472808 scopus 로고    scopus 로고
    • Calcium-binding proteins annexin A2 and S100A6 are sensors of tubular injury and recovery in acute renal failure
    • DOI 10.1111/j.1523-1755.2005.00740.x, PII 4495613
    • Calcium-binding proteins annexin A2 and S100A6 are sensors of tubular injury and recovery in acute renal failure. Cheng CW, Rifai A, Ka SM, Shui HA, Lin YF, Lee WH, Chen A, Kidney Int 2005 68 6 2694 2703 10.1111/j.1523-1755.2005. 00740.x 16316344 (Pubitemid 43251014)
    • (2005) Kidney International , vol.68 , Issue.6 , pp. 2694-2703
    • Cheng, C.-W.1    Rifai, A.2    Shuk-Man, K.A.3    Shui, H.-A.I.4    Lin, Y.-F.5    Lee, W.-H.6    Chen, A.7
  • 7
    • 70350002060 scopus 로고    scopus 로고
    • The claudins
    • 10.1186/gb-2009-10-8-235 19706201
    • The claudins. Lal-Nag M, Morin PJ, Genome Biol 2009 10 8 235 10.1186/gb-2009-10-8-235 19706201
    • (2009) Genome Biol , vol.10 , Issue.8 , pp. 235
    • Lal-Nag, M.1    Morin, P.J.2
  • 8
    • 33847127375 scopus 로고    scopus 로고
    • The claudin gene family: Expression in normal and neoplastic tissues
    • DOI 10.1186/1471-2407-6-186
    • The claudin gene family: expression in normal and neoplastic tissues. Hewitt KJ, Agarwal R, Morin PJ, BMC Cancer 2006 6 186 10.1186/1471-2407-6-186 16836752 (Pubitemid 46277109)
    • (2006) BMC Cancer , vol.6 , pp. 186
    • Hewitt, K.J.1    Agarwal, R.2    Morin, P.J.3
  • 10
    • 77954412166 scopus 로고    scopus 로고
    • TIM1 is an endogenous ligand for LMIR5/CD300b: LMIR5 deficiency ameliorates mouse kidney ischemia/reperfusion injury
    • 10.1084/jem.20090581 20566714
    • TIM1 is an endogenous ligand for LMIR5/CD300b: LMIR5 deficiency ameliorates mouse kidney ischemia/reperfusion injury. Yamanishi Y, Kitaura J, Izawa K, Kaitani A, Komeno Y, Nakamura M, Yamazaki S, Enomoto Y, Oki T, Akiba H, et al. J Exp Med 2010 207 7 1501 1511 10.1084/jem.20090581 20566714
    • (2010) J Exp Med , vol.207 , Issue.7 , pp. 1501-1511
    • Yamanishi, Y.1    Kitaura, J.2    Izawa, K.3    Kaitani, A.4    Komeno, Y.5    Nakamura, M.6    Yamazaki, S.7    Enomoto, Y.8    Oki, T.9    Akiba, H.10
  • 11
  • 12
    • 25444496156 scopus 로고    scopus 로고
    • Murine CD160, Ig-like receptor on NK Cells and NKT cells, recognizes classical and nonclassical MHC class I and regulates NK cell activation
    • Murine CD160, Ig-like receptor on NK cells and NKT cells, recognizes classical and nonclassical MHC class I and regulates NK cell activation. Maeda M, Carpenito C, Russell RC, Dasanjh J, Veinotte LL, Ohta H, Yamamura T, Tan R, Takei F, J Immunol 2005 175 7 4426 4432 16177084 (Pubitemid 41361978)
    • (2005) Journal of Immunology , vol.175 , Issue.7 , pp. 4426-4432
    • Maeda, M.1    Carpenito, C.2    Russell, R.C.3    Dasanjh, J.4    Veinotte, L.L.5    Ohta, H.6    Yamamura, T.7    Tan, R.8    Takei, F.9
  • 13
    • 0034117946 scopus 로고    scopus 로고
    • Molecular cloning, gene structure and expression pattern of pig immunoreceptor DAP12
    • DOI 10.1007/s002510050642
    • Molecular cloning, gene structure, and expression pattern of pig immunoreceptor DAP12. Yim D, Jie HB, Lanier LL, Kim YB, Immunogenetics 2000 51 6 436 442 10.1007/s002510050642 10866110 (Pubitemid 30265034)
    • (2000) Immunogenetics , vol.51 , Issue.6 , pp. 436-442
    • Yim, D.1    Jie, H.-B.2    Lanier, L.L.3    Kim, Y.B.4
  • 15
    • 33646819985 scopus 로고    scopus 로고
    • Ischemic and nephrotoxic acute renal failure are distinguished by their broad transcriptomic responses
    • DOI 10.1152/physiolgenomics.00223.2005
    • Ischemic and nephrotoxic acute renal failure are distinguished by their broad transcriptomic responses. Yuen PS, Jo SK, Holly MK, Hu X, Star RA, Physiol Genomics 2006 25 3 375 386 10.1152/physiolgenomics.00223.2005 16507785 (Pubitemid 43764760)
    • (2006) Physiological Genomics , vol.25 , Issue.3 , pp. 375-386
    • Yuen, P.S.T.1    Jo, S.-K.2    Holly, M.K.3    Hu, X.4    Star, R.A.5
  • 16
    • 78349240090 scopus 로고    scopus 로고
    • Intraoperative administration of inhaled carbon monoxide reduces delayed graft function in kidney allografts in Swine
    • 10.1111/j.1600-6143.2010.03289.x 20977633
    • Intraoperative administration of inhaled carbon monoxide reduces delayed graft function in kidney allografts in Swine. Hanto DW, Maki T, Yoon MH, Csizmadia E, Chin BY, Gallo D, Konduru B, Kuramitsu K, Smith NR, Berssenbrugge A, et al. Am J Transplant 2010 10 11 2421 2430 10.1111/j.1600-6143.2010.03289.x 20977633
    • (2010) Am J Transplant , vol.10 , Issue.11 , pp. 2421-2430
    • Hanto, D.W.1    Maki, T.2    Yoon, M.H.3    Csizmadia, E.4    Chin, B.Y.5    Gallo, D.6    Konduru, B.7    Kuramitsu, K.8    Smith, N.R.9    Berssenbrugge, A.10
  • 17
    • 77953816379 scopus 로고    scopus 로고
    • Inhibitory action of Wnt target gene osteopontin on mitochondrial cytochrome c release determines renal ischemic resistance
    • 10.1152/ajprenal.00687.2009 20392802
    • Inhibitory action of Wnt target gene osteopontin on mitochondrial cytochrome c release determines renal ischemic resistance. Vinas JL, Sola A, Jung M, Mastora C, Vinuesa E, Pi F, Hotter G, Am J Physiol Renal Physiol 2010 299 1 234 F242 10.1152/ajprenal.00687.2009 20392802
    • (2010) Am J Physiol Renal Physiol , vol.299 , Issue.1
    • Vinas, J.L.1    Sola, A.2    Jung, M.3    Mastora, C.4    Vinuesa, E.5    Pi, F.6    Hotter, G.7
  • 20
    • 67651124846 scopus 로고    scopus 로고
    • Transcription factor Nrf2 is protective during ischemic and nephrotoxic acute kidney injury in mice
    • 10.1038/ki.2009.157 19436334
    • Transcription factor Nrf2 is protective during ischemic and nephrotoxic acute kidney injury in mice. Liu M, Grigoryev DN, Crow MT, Haas M, Yamamoto M, Reddy SP, Rabb H, Kidney Int 2009 76 3 277 285 10.1038/ki.2009.157 19436334
    • (2009) Kidney Int , vol.76 , Issue.3 , pp. 277-285
    • Liu, M.1    Grigoryev, D.N.2    Crow, M.T.3    Haas, M.4    Yamamoto, M.5    Reddy, S.P.6    Rabb, H.7
  • 22
    • 80054092092 scopus 로고    scopus 로고
    • Effects of anti-adhesive therapy on kidney biomarkers of ischemia reperfusion injury in human deceased donor kidney allografts
    • 10.1111/j.1399-0012.2010.01365.x 21114535
    • Effects of anti-adhesive therapy on kidney biomarkers of ischemia reperfusion injury in human deceased donor kidney allografts. Cheadle C, Watkins T, Ehrlich E, Barnes K, Gaber AO, Hemmerich S, Rabb H, Clin Transplant 2011 25 5 766 775 10.1111/j.1399-0012.2010.01365.x 21114535
    • (2011) Clin Transplant , vol.25 , Issue.5 , pp. 766-775
    • Cheadle, C.1    Watkins, T.2    Ehrlich, E.3    Barnes, K.4    Gaber, A.O.5    Hemmerich, S.6    Rabb, H.7
  • 23
    • 77952691255 scopus 로고    scopus 로고
    • Transcriptional analysis of kidneys during repair from AKI reveals possible roles for NGAL and KIM-1 as biomarkers of AKI-to-CKD transition
    • 10.1152/ajprenal.00619.2009 20181666
    • Transcriptional analysis of kidneys during repair from AKI reveals possible roles for NGAL and KIM-1 as biomarkers of AKI-to-CKD transition. Ko GJ, Grigoryev DN, Linfert D, Jang HR, Watkins T, Cheadle C, Racusen L, Rabb H, Am J Physiol Renal Physiol 2010 298 6 1472 F1483 10.1152/ajprenal.00619.2009 20181666
    • (2010) Am J Physiol Renal Physiol , vol.298 , Issue.6
    • Ko, G.J.1    Grigoryev, D.N.2    Linfert, D.3    Jang, H.R.4    Watkins, T.5    Cheadle, C.6    Racusen, L.7    Rabb, H.8
  • 25
    • 25444458298 scopus 로고    scopus 로고
    • Considerations when using the significance analysis of microarrays (SAM) algorithm
    • DOI 10.1186/1471-2105-6-129
    • Considerations when using the significance analysis of microarrays (SAM) algorithm. Larsson O, Wahlestedt C, Timmons JA, BMC Bioinforma 2005 6 129 10.1186/1471-2105-6-129 (Pubitemid 41357890)
    • (2005) BMC Bioinformatics , vol.6 , pp. 129
    • Larsson, O.1    Wahlestedt, C.2    Timmons, J.A.3
  • 26
    • 77952923001 scopus 로고    scopus 로고
    • Shimoda LA: Intermittent and Sustained Hypoxia Induce a Similar Gene Expression Profile in the Human Aortic Endothelial Cells. Physiol Genomics
    • Polotsky VY, Savransky V, Bevans-Fonti S, Reinke C, Li J, Grigoryev DN Shimoda LA: Intermittent and Sustained Hypoxia Induce a Similar Gene Expression Profile in the Human Aortic Endothelial Cells. Physiol Genomics 2010
    • (2010) Grigoryev DN
    • Polotsky, V.Y.1    Savransky, V.2    Bevans-Fonti, S.3    Reinke, C.4    Li, J.5
  • 27
    • 35748982114 scopus 로고    scopus 로고
    • AILUN: Reannotating gene expression data automatically
    • DOI 10.1038/nmeth1107-879, PII NMETH1107-879
    • AILUN: reannotating gene expression data automatically. Chen R, Li L, Butte AJ, Nat Methods 2007 4 11 879 10.1038/nmeth1107-879 17971777 (Pubitemid 350042367)
    • (2007) Nature Methods , vol.4 , Issue.11 , pp. 879
    • Chen, R.1    Li, L.2    Butte, A.J.3
  • 28
    • 84860791012 scopus 로고    scopus 로고
    • Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes
    • 10.1073/pnas.1114513109 22499789
    • Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes. Kodama K, Horikoshi M, Toda K, Yamada S, Hara K, Irie J, Sirota M, Morgan AA, Chen R, Ohtsu H, et al. Proc Natl Acad Sci U S A 2012 109 18 7049 7054 10.1073/pnas.1114513109 22499789
    • (2012) Proc Natl Acad Sci U S A , vol.109 , Issue.18 , pp. 7049-7054
    • Kodama, K.1    Horikoshi, M.2    Toda, K.3    Yamada, S.4    Hara, K.5    Irie, J.6    Sirota, M.7    Morgan, A.A.8    Chen, R.9    Ohtsu, H.10
  • 29
    • 33846060162 scopus 로고    scopus 로고
    • Exon-based mapping of microarray probes: Recovering differential gene expression signal in underpowered hypoxia experiment
    • DOI 10.1016/j.mcp.2006.09.002, PII S089085080600065X
    • Exon-based mapping of microarray probes: recovering differential gene expression signal in underpowered hypoxia experiment. Grigoryev DN, Ma SF, Shimoda LA, Johns RA, Lee B, Garcia JG, Mol Cell Probes 2007 21 2 134 139 10.1016/j.mcp.2006.09.002 17071053 (Pubitemid 46074393)
    • (2007) Molecular and Cellular Probes , vol.21 , Issue.2 , pp. 134-139
    • Grigoryev, D.N.1    Ma, S.-F.2    Shimoda, L.A.3    Johns, R.A.4    Lee, B.5    Garcia, J.G.N.6
  • 30
    • 67650661948 scopus 로고    scopus 로고
    • Kidney ischemia-reperfusion injury induces caspase-dependent pulmonary apoptosis
    • 10.1152/ajprenal.90666.2008 19403643
    • Kidney ischemia-reperfusion injury induces caspase-dependent pulmonary apoptosis. Hassoun HT, Lie ML, Grigoryev DN, Liu M, Tuder RM, Rabb H, Am J Physiol Renal Physiol 2009 297 1 125 F137 10.1152/ajprenal.90666.2008 19403643
    • (2009) Am J Physiol Renal Physiol , vol.297 , Issue.1
    • Hassoun, H.T.1    Lie, M.L.2    Grigoryev, D.N.3    Liu, M.4    Tuder, R.M.5    Rabb, H.6
  • 31
    • 77949461096 scopus 로고    scopus 로고
    • Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis
    • 10.1186/1753-6561-3-s4-s6
    • Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis. Jimenez-Marin A, Collado-Romero M, Ramirez-Boo M, Arce C, Garrido JJ, BMC proceedings 2009 3 Suppl 4 6 10.1186/1753-6561-3-s4-s6
    • (2009) BMC Proceedings , vol.3 , Issue.SUPPL. 4 , pp. 196
    • Jimenez-Marin, A.1    Collado-Romero, M.2    Ramirez-Boo, M.3    Arce, C.4    Garrido, J.J.5
  • 32
    • 4644262045 scopus 로고    scopus 로고
    • Orthologous gene-expression profiling in multi-species models: Search for candidate genes
    • 10.1186/gb-2004-5-5-r34 15128448
    • Orthologous gene-expression profiling in multi-species models: search for candidate genes. Grigoryev DN, Ma SF, Irizarry RA, Ye SQ, Quackenbush J, Garcia JG, Genome Biol 2004 5 5 34 10.1186/gb-2004-5-5-r34 15128448
    • (2004) Genome Biol , vol.5 , Issue.5 , pp. 1834
    • Grigoryev, D.N.1    Ma, S.F.2    Irizarry, R.A.3    Ye, S.Q.4    Quackenbush, J.5    Garcia, J.G.6
  • 33
    • 77953801719 scopus 로고    scopus 로고
    • Effect of noble gases on oxygen and glucose deprived injury in human tubular kidney cells
    • 10.1258/ebm.2010.009366 20472713
    • Effect of noble gases on oxygen and glucose deprived injury in human tubular kidney cells. Rizvi M, Jawad N, Li Y, Vizcaychipi MP, Maze M, Ma D, Exp Biol Med (Maywood) 2010 235 7 886 891 10.1258/ebm.2010.009366 20472713
    • (2010) Exp Biol Med (Maywood) , vol.235 , Issue.7 , pp. 886-891
    • Rizvi, M.1    Jawad, N.2    Li, Y.3    Vizcaychipi, M.P.4    Maze, M.5    Ma, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.