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Volumn 8, Issue 10, 2013, Pages

Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 84885993905     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0076339     Document Type: Article
Times cited : (107)

References (29)
  • 1
    • 0033669189 scopus 로고    scopus 로고
    • A network of protein-protein interactions in yeast
    • Schwikowski B, Uetz P, Fields S, (2000) A network of protein-protein interactions in yeast. Nature Biotechnology 18: 1257-1261.
    • (2000) Nature Biotechnology , vol.18 , pp. 1257-1261
    • Schwikowski, B.1    Uetz, P.2    Fields, S.3
  • 2
    • 33745619564 scopus 로고    scopus 로고
    • Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions
    • Chua HN, Sung WK, Wong L, (2006) Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics 22: 1623-1630.
    • (2006) Bioinformatics , vol.22 , pp. 1623-1630
    • Chua, H.N.1    Sung, W.K.2    Wong, L.3
  • 3
    • 0035044077 scopus 로고    scopus 로고
    • Assessment of prediction accuracy of protein function from protein-protein interaction data
    • Hishigaki H, Nakai K, Ono T, Tanigami A, Takagi T, (2001) Assessment of prediction accuracy of protein function from protein-protein interaction data. Yeast 18: 523-531.
    • (2001) Yeast , vol.18 , pp. 523-531
    • Hishigaki, H.1    Nakai, K.2    Ono, T.3    Tanigami, A.4    Takagi, T.5
  • 4
    • 13844264514 scopus 로고    scopus 로고
    • Iterative cluster analysis of protein interaction data
    • Arnau V, Mars S, Marín I, (2005) Iterative cluster analysis of protein interaction data. Bioinformatics 21: 364-378.
    • (2005) Bioinformatics , vol.21 , pp. 364-378
    • Arnau, V.1    Mars, S.2    Marín, I.3
  • 5
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader G, Hogue C (2003) An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4.
    • (2003) BMC Bioinformatics , vol.4
    • Bader, G.1    Hogue, C.2
  • 6
    • 75949120438 scopus 로고    scopus 로고
    • How and when should interactome-derived clusters be used to predict functional modules and protein function?
    • Song J, Singh M, (2009) How and when should interactome-derived clusters be used to predict functional modules and protein function? Bioinformatics 25: 3143-3150.
    • (2009) Bioinformatics , vol.25 , pp. 3143-3150
    • Song, J.1    Singh, M.2
  • 7
    • 29144442904 scopus 로고    scopus 로고
    • Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps
    • Nabieva E, Jim K, Agarwal A, Chazelle B, Singh M, (2005) Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. Bioinformatics 21: 302-310.
    • (2005) Bioinformatics , vol.21 , pp. 302-310
    • Nabieva, E.1    Jim, K.2    Agarwal, A.3    Chazelle, B.4    Singh, M.5
  • 8
    • 1542327694 scopus 로고    scopus 로고
    • Whole genome annotation by using evidence in functional-linkage networks
    • Karaoz U, Murali T, Letovsky S, Zheng Y, Ding C, et al. (2003) Whole genome annotation by using evidence in functional-linkage networks. Proc Natl Acad Sci USA 101: 2888-2893.
    • (2003) Proc Natl Acad Sci USA , vol.101 , pp. 2888-2893
    • Karaoz, U.1    Murali, T.2    Letovsky, S.3    Zheng, Y.4    Ding, C.5
  • 9
    • 0038699587 scopus 로고    scopus 로고
    • Global protein function prediction from protein-protein interaction networks
    • Vazquez A, Flammini A, Maritan A, Vespignani A, (2003) Global protein function prediction from protein-protein interaction networks. Nature Biotechnology 21: 696-700.
    • (2003) Nature Biotechnology , vol.21 , pp. 696-700
    • Vazquez, A.1    Flammini, A.2    Maritan, A.3    Vespignani, A.4
  • 10
    • 33947252154 scopus 로고    scopus 로고
    • Network-based prediction of protein function
    • Sharan R, Ulitsky I, Shamir R, (2007) Network-based prediction of protein function. Mol Syst Biol 3: 1-13.
    • (2007) Mol Syst Biol , vol.3 , pp. 1-13
    • Sharan, R.1    Ulitsky, I.2    Shamir, R.3
  • 11
    • 38349088496 scopus 로고    scopus 로고
    • Coverage and error models of protein-protein interaction data by directed graph analysis
    • Chiang T, Scholtens D, Sarkar D, Gentleman R, Huber W, (2007) Coverage and error models of protein-protein interaction data by directed graph analysis. Genome Biology 8: R186.
    • (2007) Genome Biology , vol.8
    • Chiang, T.1    Scholtens, D.2    Sarkar, D.3    Gentleman, R.4    Huber, W.5
  • 12
    • 59549083190 scopus 로고    scopus 로고
    • Precision and recall estimates for two-hybrid screens
    • Huang H, Bader JS, (2009) Precision and recall estimates for two-hybrid screens. Bioinformatics 25: 372-378.
    • (2009) Bioinformatics , vol.25 , pp. 372-378
    • Huang, H.1    Bader, J.S.2
  • 13
  • 14
    • 1542357674 scopus 로고    scopus 로고
    • Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
    • Tanay A, Sharan R, Kupiec M, Shamir R, (2004) Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. Proc Natl Acad Sci USA 101: 2981-2986.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 2981-2986
    • Tanay, A.1    Sharan, R.2    Kupiec, M.3    Shamir, R.4
  • 15
    • 84864437522 scopus 로고    scopus 로고
    • Combfunc: predicting protein function using heterogeneous data sources
    • Wass MN, Barton G, Sternberg MJE, (2012) Combfunc: predicting protein function using heterogeneous data sources. Nucleic Acids Res 40: W466-70.
    • (2012) Nucleic Acids Res , vol.40
    • Wass, M.N.1    Barton, G.2    Sternberg, M.J.E.3
  • 18
    • 3042848952 scopus 로고    scopus 로고
    • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    • Han JDJ, Bertin N, Hao T, Goldberg DS, Berriz GF, et al. (2004) Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430: 88-93.
    • (2004) Nature , vol.430 , pp. 88-93
    • Han, J.D.J.1    Bertin, N.2    Hao, T.3    Goldberg, D.S.4    Berriz, G.F.5
  • 19
    • 12344273375 scopus 로고    scopus 로고
    • Modeling interactome: scale-free or geometric?
    • Przulj N, Corneil D, Jurisica I, (2004) Modeling interactome: scale-free or geometric? Bioinformatics 20: 3508-3515.
    • (2004) Bioinformatics , vol.20 , pp. 3508-3515
    • Przulj, N.1    Corneil, D.2    Jurisica, I.3
  • 21
    • 9144257282 scopus 로고    scopus 로고
    • The funcat, a functional annotation scheme for systematic classification of proteins from whole genomes
    • Ruepp A, Zollner A, Maier D, Albermann K, Hani J, et al. (2004) The funcat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic acids research 32: 5539-5545.
    • (2004) Nucleic Acids Research , vol.32 , pp. 5539-5545
    • Ruepp, A.1    Zollner, A.2    Maier, D.3    Albermann, K.4    Hani, J.5
  • 22
    • 33747817940 scopus 로고    scopus 로고
    • Toward a molecular understanding of pleiotropy
    • He X, Zhang J, (2006) Toward a molecular understanding of pleiotropy. Genetics 173: 1885-1891.
    • (2006) Genetics , vol.173 , pp. 1885-1891
    • He, X.1    Zhang, J.2
  • 23
    • 41549139527 scopus 로고    scopus 로고
    • Walking the interactome for prioritization of candidate disease genes
    • Kohler S, Bauer S, Horn D, Robinson PN, (2008) Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet 82: 949-958.
    • (2008) Am J Hum Genet , vol.82 , pp. 949-958
    • Kohler, S.1    Bauer, S.2    Horn, D.3    Robinson, P.N.4
  • 27
    • 2342435295 scopus 로고    scopus 로고
    • Mapping gene ontology to proteins based on protein-protein interaction data
    • Deng M, Tu Z, Sun F, Chen T, (2004) Mapping gene ontology to proteins based on protein-protein interaction data. Bioinformatics 20: 895-902.
    • (2004) Bioinformatics , vol.20 , pp. 895-902
    • Deng, M.1    Tu, Z.2    Sun, F.3    Chen, T.4
  • 28
    • 0037482108 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions and protein function prediction
    • Deng M, Sun F, Chen T (2003) Assessment of the reliability of protein-protein interactions and protein function prediction. Pacific Symposium on Biocomputing: 140-151.
    • (2003) Pacific Symposium on Biocomputing , pp. 140-151
    • Deng, M.1    Sun, F.2    Chen, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.