-
1
-
-
2442466927
-
Cap-dependent and cap-independent translation in eukaryotic systems
-
Merrick, W.C. (2004) Cap-dependent and cap-independent translation in eukaryotic systems. Gene, 332, 1-11.
-
(2004)
Gene
, vol.332
, pp. 1-11
-
-
Merrick, W.C.1
-
2
-
-
84861843696
-
A mechanistic overview of translation initiation in eukaryotes
-
Aitken, C.E. and Lorsch, J.R. (2012) A mechanistic overview of translation initiation in eukaryotes. Nat. Struct. Mol. Biol., 19, 568-576.
-
(2012)
Nat. Struct. Mol. Biol
, vol.19
, pp. 568-576
-
-
Aitken, C.E.1
Lorsch, J.R.2
-
3
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson, R.J., Hellen, C.U. and Pestova, T.V. (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell. Biol., 11, 113-127.
-
(2010)
Nat. Rev. Mol. Cell. Biol
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.2
Pestova, T.V.3
-
4
-
-
71849110261
-
IRES-induced conformational changes in the ribosome and the mechanism of translation initiation by internal ribosomal entry
-
Hellen, C.U. (2009) IRES-induced conformational changes in the ribosome and the mechanism of translation initiation by internal ribosomal entry. Biochim. Biophys. Acta, 1789, 558-570.
-
(2009)
Biochim. Biophys. Acta
, vol.1789
, pp. 558-570
-
-
Hellen, C.U.1
-
5
-
-
0031905698
-
A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs
-
Pestova, T.V., Shatsky, I.N., Fletcher, S.P., Jackson, R.J. and Hellen, C.U. (1998) A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs. Genes Dev., 12, 67-83.
-
(1998)
Genes Dev
, vol.12
, pp. 67-83
-
-
Pestova, T.V.1
Shatsky, I.N.2
Fletcher, S.P.3
Jackson, R.J.4
Hellen, C.U.5
-
6
-
-
0032903304
-
A phylogenetically conserved stem-loop structure at the 50 border of the internal ribosome entry site of hepatitis C virus is required for cap-independent viral translation
-
Honda, M., Beard, M.R., Ping, L.H. and Lemon, S.M. (1999) A phylogenetically conserved stem-loop structure at the 50 border of the internal ribosome entry site of hepatitis C virus is required for cap-independent viral translation. J. Virol., 73, 1165-1174.
-
(1999)
J. Virol
, vol.73
, pp. 1165-1174
-
-
Honda, M.1
Beard, M.R.2
Ping, L.H.3
Lemon, S.M.4
-
7
-
-
0035831269
-
Hepatitis C virus IRES RNAinduced changes in the conformation of the 40s ribosomal subunit
-
Spahn, C.M., Kieft, J.S., Grassucci, R.A., Penczek, P.A., Zhou, K., Doudna, J.A. and Frank, J. (2001) Hepatitis C virus IRES RNAinduced changes in the conformation of the 40s ribosomal subunit. Science, 291, 1959-1962.
-
(2001)
Science
, vol.291
, pp. 1959-1962
-
-
Spahn, C.M.1
Kieft, J.S.2
Grassucci, R.A.3
Penczek, P.A.4
Zhou, K.5
Doudna, J.A.6
Frank, J.7
-
8
-
-
27644484907
-
Structure of the hepatitis C virus IRES bound to the human 80S ribosome: Remodeling of the HCV IRES
-
Boehringer, D., Thermann, R., Ostareck-Lederer, A., Lewis, J.D. and Stark, H. (2005) Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES. Structure, 13, 1695-1706.
-
(2005)
Structure
, vol.13
, pp. 1695-1706
-
-
Boehringer, D.1
Thermann, R.2
Ostareck-Lederer, A.3
Lewis, J.D.4
Stark, H.5
-
9
-
-
62549152278
-
Positioning of subdomain IIId and apical loop of domain II of the hepatitis C IRES on the human 40S ribosome
-
Babaylova, E., Graifer, D., Malygin, A., Stahl, J., Shatsky, I. and Karpova, G. (2009) Positioning of subdomain IIId and apical loop of domain II of the hepatitis C IRES on the human 40S ribosome. Nucleic Acids Res., 37, 1141-1151.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1141-1151
-
-
Babaylova, E.1
Graifer, D.2
Malygin, A.3
Stahl, J.4
Shatsky, I.5
Karpova, G.6
-
10
-
-
0035877795
-
Ribosomal protein S5 interacts with the internal ribosomal entry site of hepatitis C virus
-
Fukushi, S., Okada, M., Stahl, J., Kageyama, T., Hoshino, F.B. and Katayama, K. (2001) Ribosomal protein S5 interacts with the internal ribosomal entry site of hepatitis C virus. J. Biol. Chem., 276, 20824-20826.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 20824-20826
-
-
Fukushi, S.1
Okada, M.2
Stahl, J.3
Kageyama, T.4
Hoshino, F.B.5
Katayama, K.6
-
11
-
-
33645804973
-
Proteins surrounding hairpin IIIe of the hepatitis C virus internal ribosome entry site on the human 40S ribosomal subunit
-
Laletina, E., Graifer, D., Malygin, A., Ivanov, A., Shatsky, I. and Karpova, G. (2006) Proteins surrounding hairpin IIIe of the hepatitis C virus internal ribosome entry site on the human 40S ribosomal subunit. Nucleic Acids Res., 34, 2027-2036.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2027-2036
-
-
Laletina, E.1
Graifer, D.2
Malygin, A.3
Ivanov, A.4
Shatsky, I.5
Karpova, G.6
-
12
-
-
0036077344
-
Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction
-
Otto, G.A., Lukavsky, P.J., Lancaster, A.M., Sarnow, P. and Puglisi, J.D. (2002) Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction. RNA, 8, 913-923.
-
(2002)
RNA
, vol.8
, pp. 913-923
-
-
Otto, G.A.1
Lukavsky, P.J.2
Lancaster, A.M.3
Sarnow, P.4
Puglisi, J.D.5
-
13
-
-
84872856529
-
Proteins of the human 40S ribosomal subunit involved in hepatitis C IRES binding as revealed from fluorescent labeling
-
Malygin, A.A., Shatsky, I.N. and Karpova, G.G. (2013) Proteins of the human 40S ribosomal subunit involved in hepatitis C IRES binding as revealed from fluorescent labeling. Biochemistry (Mosk.), 78, 53-59.
-
(2013)
Biochemistry (Mosk.
, vol.78
, pp. 53-59
-
-
Malygin, A.A.1
Shatsky, I.N.2
Karpova, G.G.3
-
14
-
-
34047263278
-
The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome
-
Passmore, L.A., Schmeing, T.M., Maag, D., Applefield, D.J., Acker, M.G., Algire, M.A., Lorsch, J.R. and Ramakrishnan, V. (2007) The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome. Mol. Cell, 26, 41-50.
-
(2007)
Mol. Cell
, vol.26
, pp. 41-50
-
-
Passmore, L.A.1
Schmeing, T.M.2
Maag, D.3
Applefield, D.J.4
Acker, M.G.5
Algire, M.A.6
Lorsch, J.R.7
Ramakrishnan, V.8
-
15
-
-
28344456738
-
Accessibility of 18S rRNA in human 40S subunits and 80S ribosomes at physiological magnesium ion concentrations-implications for the study of ribosome dynamics
-
Shenvi, C.L., Dong, K.C., Friedman, E.M., Hanson, J.A. and Cate, J.H. (2005) Accessibility of 18S rRNA in human 40S subunits and 80S ribosomes at physiological magnesium ion concentrations-implications for the study of ribosome dynamics. RNA, 11, 1898-1908.
-
(2005)
RNA
, vol.11
, pp. 1898-1908
-
-
Shenvi, C.L.1
Dong, K.C.2
Friedman, E.M.3
Hanson, J.A.4
Cate, J.H.5
-
16
-
-
0028844509
-
Unique features of internal initiation of hepatitis C virus RNA translation
-
Reynolds, J.E., Kaminski, A., Kettinen, H.J., Grace, K., Clarke, B.E., Carroll, A.R., Rowlands, D.J. and Jackson, R.J. (1995) Unique features of internal initiation of hepatitis C virus RNA translation. EMBO J., 14, 6010-6020.
-
(1995)
EMBO J
, vol.14
, pp. 6010-6020
-
-
Reynolds, J.E.1
Kaminski, A.2
Kettinen, H.J.3
Grace, K.4
Clarke, B.E.5
Carroll, A.R.6
Rowlands, D.J.7
Jackson, R.J.8
-
17
-
-
17344380379
-
Approach to identifying the functionally important segments of RNA, based on complementationaddressed modification
-
Malygin, A.A., Graifer, D.M., Laletina, E.S., Shatskii, I.N. and Karpova, G.G. (2003) Approach to identifying the functionally important segments of RNA, based on complementationaddressed modification. Mol. Biol. (Mosk.), 37, 1027-1034.
-
(2003)
Mol. Biol. (Mosk.)
, vol.37
, pp. 1027-1034
-
-
Malygin, A.A.1
Graifer, D.M.2
Laletina, E.S.3
Shatskii, I.N.4
Karpova, G.G.5
-
18
-
-
0026072648
-
Isolation of ribosomal subunits containing intact rRNA from human placenta: Estimation of functional activity of 80S ribosomes
-
Matasova, N.B., Myltseva, S.V., Zenkova, M.A., Graifer, D.M., Vladimirov, S.N. and Karpova, G.G. (1991) Isolation of ribosomal subunits containing intact rRNA from human placenta: Estimation of functional activity of 80S ribosomes. Anal. Biochem., 198, 219-223.
-
(1991)
Anal. Biochem
, vol.198
, pp. 219-223
-
-
Matasova, N.B.1
Myltseva, S.V.2
Zenkova, M.A.3
Graifer, D.M.4
Vladimirov, S.N.5
Karpova, G.G.6
-
20
-
-
0035260658
-
Mechanism of ribosome recruitment by hepatitis C IRES RNA
-
Kieft, J.S., Zhou, K., Jubin, R. and Doudna, J.A. (2001) Mechanism of ribosome recruitment by hepatitis C IRES RNA. RNA, 7, 194-206.
-
(2001)
RNA
, vol.7
, pp. 194-206
-
-
Kieft, J.S.1
Zhou, K.2
Jubin, R.3
Doudna, J.A.4
-
21
-
-
80054080846
-
Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning
-
Berry, K.E., Waghray, S., Mortimer, S.A., Bai, Y. and Doudna, J.A. (2011) Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning. Structure, 19, 1456-1466.
-
(2011)
Structure
, vol.19
, pp. 1456-1466
-
-
Berry, K.E.1
Waghray, S.2
Mortimer, S.A.3
Bai, Y.4
Doudna, J.A.5
-
22
-
-
0035081519
-
Genetic analysis of a poliovirus/hepatitis C virus chimera: New structure for domain II of the internal ribosomal entry site of hepatitis C virus
-
Zhao, W.D. and Wimmer, E. (2001) Genetic analysis of a poliovirus/hepatitis C virus chimera: new structure for domain II of the internal ribosomal entry site of hepatitis C virus. J. Virol., 75, 3719-3730.
-
(2001)
J. Virol
, vol.75
, pp. 3719-3730
-
-
Zhao, W.D.1
Wimmer, E.2
-
23
-
-
84873570263
-
HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation
-
Filbin, M.E., Vollmar, B.S., Shi, D., Gonen, T. and Kieft, J.S. (2013) HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation. Nat. Struct. Mol. Biol., 20, 150-158.
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 150-158
-
-
Filbin, M.E.1
Vollmar, B.S.2
Shi, D.3
Gonen, T.4
Kieft, J.S.5
-
24
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone, J.J., Subramanian, S., Schnare, M.N., Collett, J.R., D'souza, L.M., Du, Y., Feng, B., Lin, N., Madabusi, L.V., Muller, K.M. et al. (2002) The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics, 3, 2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
Dsouza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Muller, K.M.10
-
25
-
-
0033932448
-
An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus
-
Kolupaeva, V.G., Pestova, T.V. and Hellen, C.U. (2000) An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus. J. Virol., 74, 6242-6250.
-
(2000)
J. Virol
, vol.74
, pp. 6242-6250
-
-
Kolupaeva, V.G.1
Pestova, T.V.2
Hellen, C.U.3
-
26
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 A resolution
-
Ben-Shem, A., Garreau de Loubresse, N., Melnikov, S., Jenner, L., Yusupova, G. and Yusupov, M. (2011) The structure of the eukaryotic ribosome at 3.0 A resolution. Science, 334, 1524-1529.
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
Garreau De Loubresse, N.2
Melnikov, S.3
Jenner, L.4
Yusupova, G.5
Yusupov, M.6
-
27
-
-
34249821947
-
A distinct group of hepacivirus/pestivirus-like internal ribosomal entry sites in members of diverse picornavirus genera: Evidence for modular exchange of functional noncoding RNA elements by recombination
-
Hellen, C.U. and de Breyne, S. (2007) A distinct group of hepacivirus/pestivirus-like internal ribosomal entry sites in members of diverse picornavirus genera: Evidence for modular exchange of functional noncoding RNA elements by recombination. J. Virol., 81, 5850-5863.
-
(2007)
J. Virol
, vol.81
, pp. 5850-5863
-
-
Hellen, C.U.1
De Breyne, S.2
-
28
-
-
0033765890
-
Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation and IRES folding
-
Jubin, R., Vantuno, N.E., Kieft, J.S., Murray, M.G., Doudna, J.A., Lau, J.Y. and Baroudy, B.M. (2000) Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation and IRES folding. J. Virol., 74, 10430-10437.
-
(2000)
J. Virol
, vol.74
, pp. 10430-10437
-
-
Jubin, R.1
Vantuno, N.E.2
Kieft, J.S.3
Murray, M.G.4
Doudna, J.A.5
Lau, J.Y.6
Baroudy, B.M.7
-
29
-
-
10344243545
-
Coordinated assembly of human translation initiation complexes by the hepatitis C virus internal ribosome entry site RNA
-
Ji, H., Fraser, C.S., Yu, Y., Leary, J. and Doudna, J.A. (2004) Coordinated assembly of human translation initiation complexes by the hepatitis C virus internal ribosome entry site RNA. Proc. Natl Acad. Sci. USA, 101, 16990-16995.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 16990-16995
-
-
Ji, H.1
Fraser, C.S.2
Yu, Y.3
Leary, J.4
Doudna, J.A.5
-
30
-
-
0037440001
-
Antisense oligonucleotides targeted to the domain IIId of the hepatitis C virus IRES compete with 40S ribosomal subunit binding and prevent in vitro translation
-
Tallet-Lopez, B., Aldaz-Carroll, L., Chabas, S., Dausse, E., Staedel, C. and Toulme, J.J. (2003) Antisense oligonucleotides targeted to the domain IIId of the hepatitis C virus IRES compete with 40S ribosomal subunit binding and prevent in vitro translation. Nucleic Acids Res, 31, 734-742.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 734-742
-
-
Tallet-Lopez, B.1
Aldaz-Carroll, L.2
Chabas, S.3
Dausse, E.4
Staedel, C.5
Toulme, J.J.6
-
31
-
-
0033673387
-
Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function
-
Lukavsky, P.J., Otto, G.A., Lancaster, A.M., Sarnow, P. and Puglisi, J.D. (2000) Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function. Nat. Struct. Biol., 7, 1105-1110.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 1105-1110
-
-
Lukavsky, P.J.1
Otto, G.A.2
Lancaster, A.M.3
Sarnow, P.4
Puglisi, J.D.5
-
32
-
-
27944442879
-
Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA
-
Lancaster, L. and Noller, H.F. (2005) Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA. Mol. Cell, 20, 623-632.
-
(2005)
Mol. Cell
, vol.20
, pp. 623-632
-
-
Lancaster, L.1
Noller, H.F.2
-
33
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer, M., Dunham, C.M., Murphy, F.V.T., Weixlbaumer, A., Petry, S., Kelley, A.C., Weir, J.R. and Ramakrishnan, V. (2006) Structure of the 70S ribosome complexed with mRNA and tRNA. Science, 313, 1935-1942.
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy, F.V.T.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
34
-
-
78649426085
-
Crystal structure of the eukaryotic ribosome
-
Ben-Shem, A., Jenner, L., Yusupova, G. and Yusupov, M. (2010) Crystal structure of the eukaryotic ribosome. Science, 330, 1203-1209.
-
(2010)
Science
, vol.330
, pp. 1203-1209
-
-
Ben-Shem, A.1
Jenner, L.2
Yusupova, G.3
Yusupov, M.4
-
35
-
-
69849092725
-
Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing
-
Yu, Y., Marintchev, A., Kolupaeva, V.G., Unbehaun, A., Veryasova, T., Lai, S.C., Hong, P., Wagner, G., Hellen, C.U. and Pestova, T.V. (2009) Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing. Nucleic Acids Res., 37, 5167-5182.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5167-5182
-
-
Yu, Y.1
Marintchev, A.2
Kolupaeva, V.G.3
Unbehaun, A.4
Veryasova, T.5
Lai, S.C.6
Hong, P.7
Wagner, G.8
Hellen, C.U.9
Pestova, T.V.10
-
36
-
-
79959320660
-
HCV IRES domain IIb affects the configuration of coding RNA in the 40S subunit's decoding groove
-
Filbin, M.E. and Kieft, J.S. (2011) HCV IRES domain IIb affects the configuration of coding RNA in the 40S subunit's decoding groove. RNA, 17, 1258-1273.
-
(2011)
RNA
, vol.17
, pp. 1258-1273
-
-
Filbin, M.E.1
Kieft, J.S.2
-
37
-
-
64049105338
-
The pathway of hepatitis C virus mRNA recruitment to the human ribosome
-
Fraser, C.S., Hershey, J.W. and Doudna, J.A. (2009) The pathway of hepatitis C virus mRNA recruitment to the human ribosome. Nat. Struct. Mol. Biol., 16, 397-404.
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 397-404
-
-
Fraser, C.S.1
Hershey, J.W.2
Doudna, J.A.3
-
38
-
-
0038343425
-
The mRNA codon environment at the P and e sites of human ribosomes deduced from photo crosslinking with pUUUGUU
-
Demeshkina, N.A., Laletina, E.S., Meshchaninova, M.I., Repkova, M.N., Ven?iaminova, A.G., Graifer, D.M. and Karpova, G.G. (2003) The mRNA codon environment at the P and E sites of human ribosomes deduced from photo crosslinking with pUUUGUU. Mol. Biol. (Mosk.), 37, 147-155.
-
(2003)
Mol. Biol. (Mosk)
, vol.37
, pp. 147-155
-
-
Demeshkina, N.A.1
Laletina, E.S.2
Meshchaninova, M.I.3
Repkova, M.N.4
Veniaminova, A.G.5
Graifer, D.M.6
Karpova, G.G.7
-
39
-
-
44649095899
-
Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes
-
Pisarev, A.V., Kolupaeva, V.G., Yusupov, M.M., Hellen, C.U. and Pestova, T.V. (2008) Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes. EMBO J., 27, 1609-1621.
-
(2008)
EMBO J
, vol.27
, pp. 1609-1621
-
-
Pisarev, A.V.1
Kolupaeva, V.G.2
Yusupov, M.M.3
Hellen, C.U.4
Pestova, T.V.5
-
40
-
-
79958804665
-
EIF2A mediates translation of hepatitis C viral mRNA under stress conditions
-
Kim, J.H., Park, S.M., Park, J.H., Keum, S.J. and Jang, S.K. (2011) eIF2A mediates translation of hepatitis C viral mRNA under stress conditions. EMBO J., 30, 2454-2464.
-
(2011)
EMBO J
, vol.30
, pp. 2454-2464
-
-
Kim, J.H.1
Park, S.M.2
Park, J.H.3
Keum, S.J.4
Jang, S.K.5
-
41
-
-
49449093122
-
Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2
-
Terenin, I.M., Dmitriev, S.E., Andreev, D.E. and Shatsky, I.N. (2008) Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2. Nat. Struct. Mol. Biol., 15, 836-841.
-
(2008)
Nat. Struct. Mol. Biol
, vol.15
, pp. 836-841
-
-
Terenin, I.M.1
Dmitriev, S.E.2
Andreev, D.E.3
Shatsky, I.N.4
|