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Volumn 60, Issue 3, 2013, Pages 417-425

Pre-analytical-related variability influencing serum peptide profiles demonstrated in a mass spectrometry-based search for colorectal and prostate cancer biomarkers

Author keywords

Apolipoprotein A IV; Cancer; Fibrinopeptide A; Mass spectrometry; Peptidome; Serum

Indexed keywords

PEPTIDE FRAGMENT; PLASMA PROTEIN; TUMOR MARKER;

EID: 84885911460     PISSN: 0001527X     EISSN: 1734154X     Source Type: Journal    
DOI: 10.18388/abp.2013_2002     Document Type: Article
Times cited : (12)

References (33)
  • 1
    • 80052017288 scopus 로고    scopus 로고
    • Therapeutic roles of heparin anticoagulants in cancer and related disorders
    • Ahmad S, Ansari AA (2011) Therapeutic roles of heparin anticoagulants in cancer and related disorders. Med Chem 7:504-517.
    • (2011) Med Chem , vol.7 , pp. 504-517
    • Ahmad, S.1    Ansari, A.A.2
  • 4
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    • Benjamini Y, Hochberg Y (1995) Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J Royal Statistic Soc Series B (Methodological) 57:289-300.
    • (1995) J Royal Statistic Soc Series B (Methodological) , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 59449093452 scopus 로고    scopus 로고
    • A proteomic approach to identify differentially expressed plasma proteins between the fed and prolonged fasted states
    • Bertile F, Schaeffer C, Le Maho Y, Raclot T & Van Dorsselaer A (2009) A proteomic approach to identify differentially expressed plasma proteins between the fed and prolonged fasted states. Proteomics 9:148-158.
    • (2009) Proteomics , vol.9 , pp. 148-158
    • Bertile, F.1    Schaeffer, C.2    Le Maho, Y.3    Raclot, T.4    Van Dorsselaer, A.5
  • 6
    • 78649719133 scopus 로고    scopus 로고
    • Specific investigation of sample handling effects on protease activities and absolute serum concentrations of various putative peptidome cancer biomarkers
    • Van den Broek I, Sparidans RW, Schellens JHM, Beijnen JH (2010a) Specific investigation of sample handling effects on protease activities and absolute serum concentrations of various putative peptidome cancer biomarkers. Clin Proteomics 6:115-127.
    • (2010) Clin Proteomics , vol.6 , pp. 115-127
    • Van den Broek, I.1    Sparidans, R.W.2    Schellens, J.H.M.3    Beijnen, J.H.4
  • 9
    • 34249753618 scopus 로고
    • Support-vector networks
    • Cortes C, Vapnik V (1995) Support-vector networks. Mach Learn 20: 273-297.
    • (1995) Mach Learn , vol.20 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 11
    • 17444386005 scopus 로고    scopus 로고
    • Identification of the thrombin light chain a as the single best mass for differentiation of gastric cancer patients from individuals with dyspepsia by proteome analysis
    • Ebert MPA, Lamer S, Meuer J, Malfertheiner P, Reymond M, Buschmann T, Röcken C, Seibert V (2005) Identification of the thrombin light chain a as the single best mass for differentiation of gastric cancer patients from individuals with dyspepsia by proteome analysis. J Proteome Res 4:586-590.
    • (2005) J Proteome Res , vol.4 , pp. 586-590
    • Ebert, M.P.A.1    Lamer, S.2    Meuer, J.3    Malfertheiner, P.4    Reymond, M.5    Buschmann, T.6    Röcken, C.7    Seibert, V.8
  • 15
    • 33745442821 scopus 로고    scopus 로고
    • The MALDI-TOF mass spectrometric view of the plasma proteome and peptidome
    • Hortin GL (2006) The MALDI-TOF mass spectrometric view of the plasma proteome and peptidome. Clin Chem 52:1223-1237.
    • (2006) Clin Chem , vol.52 , pp. 1223-1237
    • Hortin, G.L.1
  • 16
    • 38649083118 scopus 로고    scopus 로고
    • Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
    • Käll L, Storey JD, MacCoss MJ, Noble WS (2008) Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. J Proteome Res 7:29-34.
    • (2008) J Proteome Res , vol.7 , pp. 29-34
    • Käll, L.1    Storey, J.D.2    MacCoss, M.J.3    Noble, W.S.4
  • 17
    • 20844448187 scopus 로고    scopus 로고
    • Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery
    • Koomen JM, Li D, Xiao L, Liu TC, Coombes KR, Abbruzzese J, Kobayashi R (2005) Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery. J Proteome Res 4:972-981.
    • (2005) J Proteome Res , vol.4 , pp. 972-981
    • Koomen, J.M.1    Li, D.2    Xiao, L.3    Liu, T.C.4    Coombes, K.R.5    Abbruzzese, J.6    Kobayashi, R.7
  • 19
    • 23944466410 scopus 로고    scopus 로고
    • Plasma Proteome Database as a resource for proteomics research
    • Muthusamy B et al. (2005) Plasma Proteome Database as a resource for proteomics research. Proteomics 5:3531-3536.
    • (2005) Proteomics , vol.5 , pp. 3531-3536
    • Muthusamy, B.1
  • 25
    • 33750998490 scopus 로고    scopus 로고
    • Declining plasma fibrinogen alpha fragment identifies HER2-positive breast cancer patients and reverts to normal levels after surgery
    • Shi Q, Harris LN, Lu X, Li X, Hwang J, Gentleman R, Iglehart JD, Miron A (2006) Declining plasma fibrinogen alpha fragment identifies HER2-positive breast cancer patients and reverts to normal levels after surgery. J Proteome Res 5:2947-2955.
    • (2006) J Proteome Res , vol.5 , pp. 2947-2955
    • Shi, Q.1    Harris, L.N.2    Lu, X.3    Li, X.4    Hwang, J.5    Gentleman, R.6    Iglehart, J.D.7    Miron, A.8
  • 26
    • 33646909090 scopus 로고    scopus 로고
    • Quantification of fragments of human serum inter-alpha-trypsin inhibitor heavy chain 4 by a surface-enhanced laser desorption/ionizationbased immunoassay
    • Song J, Patel M, Rosenzweig CN, Chan-Li Y, Sokoll LJ, Fung ET, Choi-Miura N-H, Goggins M, Chan DW, Zhang Z (2006) Quantification of fragments of human serum inter-alpha-trypsin inhibitor heavy chain 4 by a surface-enhanced laser desorption/ionizationbased immunoassay. Clin Chem 52:1045-1053.
    • (2006) Clin Chem , vol.52 , pp. 1045-1053
    • Song, J.1    Patel, M.2    Rosenzweig, C.N.3    Chan-Li, Y.4    Sokoll, L.J.5    Fung, E.T.6    Choi-Miura, N.-H.7    Goggins, M.8    Chan, D.W.9    Zhang, Z.10
  • 32
    • 79960214321 scopus 로고    scopus 로고
    • A targeted proteomics-based pipeline for verification of biomarkers in plasma
    • Whiteaker JR et al. (2011) A targeted proteomics-based pipeline for verification of biomarkers in plasma. Nat Biotechnol 29:625-634.
    • (2011) Nat Biotechnol , vol.29 , pp. 625-634
    • Whiteaker, J.R.1
  • 33
    • 0034711163 scopus 로고    scopus 로고
    • Epidemiological and genetic associations of activated factor XII concentration with factor VII activity, fibrinopeptide A concentration, and risk of coronary heart disease in men
    • Zito F, Drummond F, Bujac SR, Esnouf MP, Morrissey JH, Humphries SE, Miller GJ (2000) Epidemiological and genetic associations of activated factor XII concentration with factor VII activity, fibrinopeptide A concentration, and risk of coronary heart disease in men. Circulation 102:2058-2062.
    • (2000) Circulation , vol.102 , pp. 2058-2062
    • Zito, F.1    Drummond, F.2    Bujac, S.R.3    Esnouf, M.P.4    Morrissey, J.H.5    Humphries, S.E.6    Miller, G.J.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.