-
1
-
-
14244272868
-
PHENIX: building new software for automated crystallographic structure determination
-
Adams P.D., Grosse-Kunstleve R.W., Hung L.W., Ioerger T.R., McCoy A.J., Moriarty N.W., Read R.J., Sacchettini J.C., Sauter N.K., Terwilliger T.C. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D Biol. Crystallogr. 2002, 58:1948-1954.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
2
-
-
84878755914
-
Diverse sequence determinants control human and mouse receptor interacting protein 3 (RIP3) and mixed lineage kinase domain-like (MLKL) interaction in necroptotic signaling
-
Chen W., Zhou Z., Li L., Zhong C.Q., Zheng X., Wu X., Zhang Y., Ma H., Huang D., Li W., et al. Diverse sequence determinants control human and mouse receptor interacting protein 3 (RIP3) and mixed lineage kinase domain-like (MLKL) interaction in necroptotic signaling. J.Biol. Chem. 2013, 288:16247-16261.
-
(2013)
J.Biol. Chem.
, vol.288
, pp. 16247-16261
-
-
Chen, W.1
Zhou, Z.2
Li, L.3
Zhong, C.Q.4
Zheng, X.5
Wu, X.6
Zhang, Y.7
Ma, H.8
Huang, D.9
Li, W.10
-
3
-
-
66449133280
-
Phosphorylation-driven assembly of the RIP1-RIP3 complex regulates programmed necrosis and virus-induced inflammation
-
Cho Y.S., Challa S., Moquin D., Genga R., Ray T.D., Guildford M., Chan F.K. Phosphorylation-driven assembly of the RIP1-RIP3 complex regulates programmed necrosis and virus-induced inflammation. Cell 2009, 137:1112-1123.
-
(2009)
Cell
, vol.137
, pp. 1112-1123
-
-
Cho, Y.S.1
Challa, S.2
Moquin, D.3
Genga, R.4
Ray, T.D.5
Guildford, M.6
Chan, F.K.7
-
4
-
-
77951251430
-
Necroptosis as an alternative form of programmed cell death
-
Christofferson D.E., Yuan J. Necroptosis as an alternative form of programmed cell death. Curr. Opin. Cell Biol. 2010, 22:263-268.
-
(2010)
Curr. Opin. Cell Biol.
, vol.22
, pp. 263-268
-
-
Christofferson, D.E.1
Yuan, J.2
-
5
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 1994, 50:760-763. Collaborative Computational Project, Number 4.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
6
-
-
84885838347
-
-
The PyMOL Molecular Graphics System.
-
DeLano, W.L. (2002). The PyMOL Molecular Graphics System. http://www.pymol.org.
-
(2002)
-
-
DeLano, W.L.1
-
8
-
-
48849113878
-
Comparative protein structure modeling using MODELLER
-
Eswar N., Webb B., Marti-Renom M.A., Madhusudhan M.S., Eramian D., Shen M.Y., Pieper U., Sali A. Comparative protein structure modeling using MODELLER. Curr. Protoc. Protein Sci. 2007, 2:2.9.
-
(2007)
Curr. Protoc. Protein Sci.
, vol.2
-
-
Eswar, N.1
Webb, B.2
Marti-Renom, M.A.3
Madhusudhan, M.S.4
Eramian, D.5
Shen, M.Y.6
Pieper, U.7
Sali, A.8
-
9
-
-
66749183275
-
Receptor interacting protein kinase-3 determines cellular necrotic response to TNF-alpha
-
He S., Wang L., Miao L., Wang T., Du F., Zhao L., Wang X. Receptor interacting protein kinase-3 determines cellular necrotic response to TNF-alpha. Cell 2009, 137:1100-1111.
-
(2009)
Cell
, vol.137
, pp. 1100-1111
-
-
He, S.1
Wang, L.2
Miao, L.3
Wang, T.4
Du, F.5
Zhao, L.6
Wang, X.7
-
10
-
-
0026342401
-
Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase
-
Knighton D.R., Zheng J.H., Ten Eyck L.F., Ashford V.A., Xuong N.H., Taylor S.S., Sowadski J.M. Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science 1991, 253:407-414.
-
(1991)
Science
, vol.253
, pp. 407-414
-
-
Knighton, D.R.1
Zheng, J.H.2
Ten Eyck, L.F.3
Ashford, V.A.4
Xuong, N.H.5
Taylor, S.S.6
Sowadski, J.M.7
-
11
-
-
0026326821
-
Structure of a peptide inhibitor bound to the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase
-
Knighton D.R., Zheng J.H., Ten Eyck L.F., Xuong N.H., Taylor S.S., Sowadski J.M. Structure of a peptide inhibitor bound to the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science 1991, 253:414-420.
-
(1991)
Science
, vol.253
, pp. 414-420
-
-
Knighton, D.R.1
Zheng, J.H.2
Ten Eyck, L.F.3
Xuong, N.H.4
Taylor, S.S.5
Sowadski, J.M.6
-
12
-
-
33845197964
-
Surface comparison of active and inactive protein kinases identifies a conserved activation mechanism
-
Kornev A.P., Haste N.M., Taylor S.S., Eyck L.F. Surface comparison of active and inactive protein kinases identifies a conserved activation mechanism. Proc. Natl. Acad. Sci. USA 2006, 103:17783-17788.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 17783-17788
-
-
Kornev, A.P.1
Haste, N.M.2
Taylor, S.S.3
Eyck, L.F.4
-
13
-
-
33646755174
-
A Src-like inactive conformation in the abl tyrosine kinase domain
-
Levinson N.M., Kuchment O., Shen K., Young M.A., Koldobskiy M., Karplus M., Cole P.A., Kuriyan J. A Src-like inactive conformation in the abl tyrosine kinase domain. PLoS Biol. 2006, 4:e144.
-
(2006)
PLoS Biol.
, vol.4
-
-
Levinson, N.M.1
Kuchment, O.2
Shen, K.3
Young, M.A.4
Koldobskiy, M.5
Karplus, M.6
Cole, P.A.7
Kuriyan, J.8
-
14
-
-
84864240409
-
The RIP1/RIP3 necrosome forms a functional amyloid signaling complex required for programmed necrosis
-
Li J., McQuade T., Siemer A.B., Napetschnig J., Moriwaki K., Hsiao Y.S., Damko E., Moquin D., Walz T., McDermott A., et al. The RIP1/RIP3 necrosome forms a functional amyloid signaling complex required for programmed necrosis. Cell 2012, 150:339-350.
-
(2012)
Cell
, vol.150
, pp. 339-350
-
-
Li, J.1
McQuade, T.2
Siemer, A.B.3
Napetschnig, J.4
Moriwaki, K.5
Hsiao, Y.S.6
Damko, E.7
Moquin, D.8
Walz, T.9
McDermott, A.10
-
15
-
-
34447508216
-
Phaser crystallographic software
-
McCoy A.J., Grosse-Kunstleve R.W., Adams P.D., Winn M.D., Storoni L.C., Read R.J. Phaser crystallographic software. J.Appl. Cryst. 2007, 40:658-674.
-
(2007)
J.Appl. Cryst.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
16
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 1997, 276:307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
17
-
-
84875592758
-
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
-
Pronk S., Páll S., Schulz R., Larsson P., Bjelkmar P., Apostolov R., Shirts M.R., Smith J.C., Kasson P.M., van der Spoel D., et al. GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics 2013, 29:845-854.
-
(2013)
Bioinformatics
, vol.29
, pp. 845-854
-
-
Pronk, S.1
Páll, S.2
Schulz, R.3
Larsson, P.4
Bjelkmar, P.5
Apostolov, R.6
Shirts, M.R.7
Smith, J.C.8
Kasson, P.M.9
van der Spoel, D.10
-
18
-
-
0029054725
-
RIP: a novel protein containing a death domain that interacts with Fas/APO-1 (CD95) in yeast and causes cell death
-
Stanger B.Z., Leder P., Lee T.H., Kim E., Seed B. RIP: a novel protein containing a death domain that interacts with Fas/APO-1 (CD95) in yeast and causes cell death. Cell 1995, 81:513-523.
-
(1995)
Cell
, vol.81
, pp. 513-523
-
-
Stanger, B.Z.1
Leder, P.2
Lee, T.H.3
Kim, E.4
Seed, B.5
-
19
-
-
0033546276
-
RIP3, a novel apoptosis-inducing kinase
-
Sun X., Lee J., Navas T., Baldwin D.T., Stewart T.A., Dixit V.M. RIP3, a novel apoptosis-inducing kinase. J.Biol. Chem. 1999, 274:16871-16875.
-
(1999)
J.Biol. Chem.
, vol.274
, pp. 16871-16875
-
-
Sun, X.1
Lee, J.2
Navas, T.3
Baldwin, D.T.4
Stewart, T.A.5
Dixit, V.M.6
-
20
-
-
0037088632
-
Identification of a novel homotypic interaction motif required for the phosphorylation of receptor-interacting protein (RIP) by RIP3
-
Sun X., Yin J., Starovasnik M.A., Fairbrother W.J., Dixit V.M. Identification of a novel homotypic interaction motif required for the phosphorylation of receptor-interacting protein (RIP) by RIP3. J.Biol. Chem. 2002, 277:9505-9511.
-
(2002)
J.Biol. Chem.
, vol.277
, pp. 9505-9511
-
-
Sun, X.1
Yin, J.2
Starovasnik, M.A.3
Fairbrother, W.J.4
Dixit, V.M.5
-
21
-
-
84862907788
-
Mixed lineage kinase domain-like protein mediates necrosis signaling downstream of RIP3 kinase
-
Sun L., Wang H., Wang Z., He S., Chen S., Liao D., Wang L., Yan J., Liu W., Lei X., Wang X. Mixed lineage kinase domain-like protein mediates necrosis signaling downstream of RIP3 kinase. Cell 2012, 148:213-227.
-
(2012)
Cell
, vol.148
, pp. 213-227
-
-
Sun, L.1
Wang, H.2
Wang, Z.3
He, S.4
Chen, S.5
Liao, D.6
Wang, L.7
Yan, J.8
Liu, W.9
Lei, X.10
Wang, X.11
-
22
-
-
77957105977
-
Molecular mechanisms of necroptosis: an ordered cellular explosion
-
Vandenabeele P., Galluzzi L., Vanden Berghe T., Kroemer G. Molecular mechanisms of necroptosis: an ordered cellular explosion. Nat. Rev. Mol. Cell Biol. 2010, 11:700-714.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 700-714
-
-
Vandenabeele, P.1
Galluzzi, L.2
Vanden Berghe, T.3
Kroemer, G.4
-
23
-
-
84862909353
-
The mitochondrial phosphatase PGAM5 functions at the convergence point of multiple necrotic death pathways
-
Wang Z., Jiang H., Chen S., Du F., Wang X. The mitochondrial phosphatase PGAM5 functions at the convergence point of multiple necrotic death pathways. Cell 2012, 148:228-243.
-
(2012)
Cell
, vol.148
, pp. 228-243
-
-
Wang, Z.1
Jiang, H.2
Chen, S.3
Du, F.4
Wang, X.5
-
24
-
-
33847037100
-
Prediction of side-chain conformations on protein surfaces. Proteins
-
Xiang Z., Steinbach P.J., Jacobson M.P., Friesner R.A., Honig B. Prediction of side-chain conformations on protein surfaces. Proteins. Structure, Function, and Bioinformatics 2007, 66:814-823.
-
(2007)
Structure, Function, and Bioinformatics
, vol.66
, pp. 814-823
-
-
Xiang, Z.1
Steinbach, P.J.2
Jacobson, M.P.3
Friesner, R.A.4
Honig, B.5
-
25
-
-
84874860953
-
Structural basis of RIP1 inhibition by necrostatins
-
Xie T., Peng W., Liu Y., Yan C., Maki J., Degterev A., Yuan J., Shi Y. Structural basis of RIP1 inhibition by necrostatins. Structure 2013, 21:493-499.
-
(2013)
Structure
, vol.21
, pp. 493-499
-
-
Xie, T.1
Peng, W.2
Liu, Y.3
Yan, C.4
Maki, J.5
Degterev, A.6
Yuan, J.7
Shi, Y.8
-
26
-
-
0033587070
-
Identification of RIP3, a RIP-like kinase that activates apoptosis and NFkappaB
-
Yu P.W., Huang B.C., Shen M., Quast J., Chan E., Xu X., Nolan G.P., Payan D.G., Luo Y. Identification of RIP3, a RIP-like kinase that activates apoptosis and NFkappaB. Curr. Biol. 1999, 9:539-542.
-
(1999)
Curr. Biol.
, vol.9
, pp. 539-542
-
-
Yu, P.W.1
Huang, B.C.2
Shen, M.3
Quast, J.4
Chan, E.5
Xu, X.6
Nolan, G.P.7
Payan, D.G.8
Luo, Y.9
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