Genetic diversity and origin of cultivated potatoes based on plastid microsatellite polymorphism

Genetic Resources and Crop Evolution

Volumn 60, Issue 7, 2013, Pages 1997-2015

  Gavrilenko, Tatjana ^a,b   Antonova, Olga ^a   Shuvalova, Anna ^a   Krylova, Ekaterina ^a   Alpatyeva, Natalia ^a   Spooner, David M ^c   Novikova, Lubov ^a  

^a N I VAVILOV ALL RUSSIAN INSTITUTE OF PLANT GENETIC RESOURCES   (Russian Federation)

^b ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Cultivated potatoes; Genetic variation; Phylogeny; Plastid microsatellites (SSRs); Solanum; Taxonomy

Indexed keywords

ANCESTRY; ANGIOSPERM; GENETIC VARIATION; GENOME; HYBRID; PHYLOGENY; PLASTID; POLYMORPHISM; POTATO; SPECIES DIVERSITY; TAXONOMY;

PERU;

EID: 84885744931     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-013-9968-1     Document Type: Article

References (61)

1. Brown CR (1999) A native American technology transfer: the diffusion of potato. HortScience 34: 817-821.
2. Bryan GJ, McNicoll J, Ramsay G, Meyer RC, DeJong WS (1999) Polymorphic simple sequence repeat markers in chloroplast genomes of Solanaceous plants. Theor Appl Genet 99: 859-867.
3. Bukasov SM (1933) The potatoes of South America and their breeding possibilities. Trudy po Prikladnoj Botanike Genetike i Selekcii, Supplement 58: 1-192.
4. Bukasov SM (1939) The origin of potato species. Physis (Buenos Aires) 18: 41-46.
5. Bukasov SM (1966) Die Kulturarten der Kartoffel und ihre wildwachsenden Vorfahren. Zeitschr für Pflanzenzüchtung Bd 55. Hft 2: 139-164.
6. Bukasov SM (1978) Systematics of the potato. Trudy Prikl Bot Gen Selekcii 62: 3-35.
7. Chung HJ, Jung JD, Park HW, Kim JH, Cha HW, Min SR, Jeong WJ, Liu J (2006) The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence. Plant Cell Rep 25: 1369-1379.
8. Darwin C (1845) A naturalist's voyage. Journal of research into the natural history and geology of the countries visited during the voyage of H. M. C. Beagle round the world, John Murray, London.
9. Ennos RA, Sinclair WT, Hu XS, Langdon A (1999) Using organelle markers to elucidate the history, ecology and evolution of plant populations. In: Hollingsworth PM, Bateman RM, Gornall RJ (eds) Molecular systematics and plant evolution. Taylor & Francis, London, pp 1-19.
10. Gavrilenko T, Antonova O, Ovchinnikova A, Novikova L, Krilova E, Mironenko N, Pendinen G, Islamshina A, Shvachko N, Kiru S, Kostina L, Afanasenko O, Spooner DM (2010) A microsatellite and morphological assessment of the Russian National cultivated potato collection. Genet Resour Crop Evol 57: 1151-1164.
11. Grun P (1973) Cytoplasmic sterilities that separate the Group Tuberosum common potato from its putative tetraploid ancestor. Evolution 27: 633-643.
12. Grun P (1990) The evolution of cultivated potatoes. In: Bretting PK (ed) New perspectives on the origin and evolution of New World domesticated plants. Econ Bot 44(3 Suppl): 39-55.
13. Grun P, Ochoa C, Capage D (1977) Evolution of cytoplasmic factors in tetraploid common potatoes. Amer J Bot 64: 412-420.
14. Hawkes JG (1944) Potato collecting expeditions in Mexico and South America. II. Systematic classification of the collections. Bull Imp Bur Plant Breed and Genet, Cambridge.
15. Hawkes JG (1956) Taxonomic studies on the tuber-bearing Solanums. 1. Solanum tuberosum and the tetraploid complex. Proc Linn Soc Lond 166: 97-144.
16. Hawkes JG (1958) Kartoffel. 1. Taxonomy, cytology and crossability. In: Kappert H, Rudorf W (ed) Handbuch der Pflanzenzüchtung. Paul Parey, Berlin 3: 1-43.
17. Hawkes JG (1962) The origin of Solanum juzepczukii Buk. and S. curtilobum Juz. et Buk. Z Pflanzenz 47: 1-14.
18. Hawkes JG (1990) The potato: evolution, biodiversity, and genetic resources. Smithsonian Institution Press, Washington.
19. Hijmans RJ, Spooner DM, Salas A, Guarino L, De La Cruz J (2002) Atlas of wild potatoes. Systematic and Ecogeographic Studies of Crop Genepools 10: 1-129.
20. Hosaka K (1986) Who is the mother of the potato?-Restriction endonuclease analysis of chloroplast DNA of cultivated potatoes. Theor Appl Genet 72: 606-618.
21. Hosaka K (1995) Successive domestication and evolution of the Andean potatoes as revealed by chloroplast DNA restriction endonuclease analysis. Theor Appl Genet 90: 356-363.
22. Hosaka K (2002) Distribution of the 241 bp deletion of chloroplast DNA in wild potato species. Amer J Potato Res 79: 119-123.
23. Hosaka K (2003) T-type chloroplast DNA in Solanumtuberosum L. ssp. tuberosum was conferred from some populations of S. tarijense Hawkes. Amer J Potato Res 80: 21-32.
24. Hosaka K (2004) Evolutionary pathway of T-type chloroplast DNA in potato. Amer J Potato Res 81: 153-158.
25. Hosaka K, Hanneman RE Jr (1988a) The origin of the cultivated tetraploid potato based on chloroplast DNA. Theor Appl Genet 76: 172-176.
26. Hosaka K, Hanneman RE Jr (1988b) Origin of chloroplast DNA diversity in the Andean potatoes. Theor Appl Genet 76: 333-340.
27. Hosaka K, Ogihara Y, Matsubayashi M, Tsunewaki K (1984) Phylogenetic relationship between the tuberous Solanum species as revealed by restriction endonuclease analysis of chloroplast DNA. Jpn J Genet 59: 349-369.
28. Huamán Z, Spooner DM (2002) Reclassification of landrace populations of cultivated potatoes (Solanum sect. Petota). Amer J Bot 89: 947-965.
29. Huamán Z, Hawkes JG, Rowe PR (1982) A biosystematic study of the origin of the diploid potato, Solanum ajanhuiri. Euphytica 31: 665-675.
30. Huanco V (1991) Potencial de las papas amargas en el altiplano de Puno. Perú. In: Rea J, Vacher JJ (eds) La papa amarga. I Mesa Redonda, Peru, pp 25-26.
31. Jackson MT, Hawkes JG, Rowe PR (1977) The nature of Solanum × chaucha Juz. et Buk., a triploid cultivated potato of the South American Andes. Euphytica 26: 775-783.
32. Juzepczuk SW (1937) New species of the genus Solanum L. in the group Tuberarium Dun. Bull Acad Sci USSR 2: 295-331.
33. Juzepczuk SW, Bukasov SM (1929) A contribution to the question of the origin of the potato. Trudy Vsesoyuzn Szeda Genet Selek 3: 593-611.
34. Kardolus JP (1998) A biosystematic analysis of Solanum acaule. Dissertation, Wageningen University and Research Center Publications.
35. Kawagoe Y, Kikuta Y (1991) Chloroplast DNA evolution in potato (Solanum tuberosum L). Theor Appl Genet 81: 13-20.
36. Miller JT, Spooner DM (1999) Collapse of species boundaries in the wild potato Solanum brevicaule complex (Solanaceae, S. sect. Petota): molecular data. Plant Syst Evol 214: 103-130.
37. Nakagawa K, Hosaka K (2002) Species relationships between a wild tetraploid potato species, Solanum acaule Bitter, and its related species as revealed by RFLPs of chloroplast and nuclear DNA. Am J Potato Res 79: 85-98.
38. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
39. Ovchinnikova A, Krylova E, Gavrilenko T, Smekalova T, Zhuk M, Knapp S, Spooner DM (2011) Taxonomy of cultivated potatoes (Solanum section Petota: Solanaceae). Bot J Linn Soc 165: 107-155.
40. Provan J, Powell W, Dewar H, Bryan G, Machray GC, Waugh R (1999) An extreme cytoplasmic bottleneck in the modern European cultivated potato (Solanum tuberosum) is not reflected in decreased levels of nuclear diversity. Proc R Soc Lond B Biol Sci 266: 633-639.
41. Raker C, Spooner DM (2002) The Chilean tetraploid cultivated potato, Solanum tuberosum, is distinct from the Andean populations; microsatellite data. Crop Sci 42: 1451-1458.
42. Rodríguez F, Ghislain M, Clausen AM, Jansky SH, Spooner DM (2010) Hybrid origins of cultivated potatoes. Theor Appl Genet 121: 1187-1198.
43. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
44. Salaman RN (1946) The early European potato: its character and place of origin. J Linn Soc Lond Bot 53: 1-27.
45. Schmiediche PE, Hawkes JG, Ochoa CM (1982) Breeding of the cultivated potato species Solanum juzepczukii Buk. and S. curtilobum Juz. et Buk. II. Euphytica 31: 695-707.
46. Simmonds NW (1964) Studies of the tetraploid potatoes. 1. The variability of the Andigena Group. J Linn Soc Lond Bot 58: 461-474.
47. Spooner DM (2009) DNA barcoding will frequently fail in complicated groups: an example in wild potatoes. Amer J Bot 96: 1177-1189.
48. Spooner DM, McLean K, Ramsay G, Waugh R, Bryan GJ (2005) A single domestication for potato based on multilocus AFLP genotyping. Proc Natl Acad Sci USA 102: 14694-14699.
49. Spooner DM, Fajardo D, Bryan GJ (2007a) Species limits of Solanum berthaultii Hawkes and S. tarijense Hawkes and the implications for species boundaries in Solanum sect. Petota Taxon 56: 987-999.
50. Spooner DM, Núñez J, Trujillo G, Del Rosario Herrera M, Guzmán F, Ghislain M (2007b) Extensive simple sequence repeat genotyping of potato landraces supports a major reevaluation of their gene pool structure and classification. Proc Natl Acad Sci USA 104: 19398-19403.
51. Spooner DM, Gavrilenko T, Jansky SH, Ovchinnikova A, Krylova E, Knapp S, Simon R (2010) Ecogeography of ploidy variation in cultivated potato (Solanum sect. Petota). Amer J Bot 97: 2049-2060.
52. Spooner DM, Jansky S, Clausen A, Del Rosario Herrera M, Ghislain M (2012) The enigma of Solanum maglia in the origin of the Chilean cultivated potato, Solanum tuberosum Chilotanum Group. Econ Bot 66: 12-21.
53. Sukhotu T, Hosaka K (2006) Origin and evolution of Andigena potatoes revealed by chloroplast and nuclear DNA markers. Genome 49: 636-647.
54. Sukhotu T, Kamijima O, Hosaka K (2004) Nuclear and chloroplast DNA differentiation in Andean potatoes. Genome 47: 46-56.
55. Sukhotu T, Kamijima O, Hosaka K (2005) Genetic diversity of the Andean tetraploid cultivated potato (Solanum tuberosum L. subsp. andigena Hawkes) evaluated by chloroplast and nuclear DNA markers. Genome 48: 55-64.
56. Sukhotu T, Kamijima O, Hosaka K (2006) Chloroplast DNA variation in the most primitive cultivated diploid potato species Solanum stenotomum Juz. et Buk. and its putative wild ancestral species using high-resolution markers. Genet Res Crop Evol 53: 53-63.
57. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Molec Biol Evol 24: 1596-1599.
58. Ugent D (1970) The potato: what is the origin of this important crop plant, and how did it first become domesticated? Science 170: 1161-1166.
59. Ugent D, Dillehay T, Ramirez C (1987) Potato remains from a late Pleistocene settlement in South central Chile. Econ Bot 41: 17-27.
60. van den Berg RG, Miller JT, Ugarte ML, Kardolus JP, Villand J, Nienhuis J, Spooner DM (1998) Collapse of morphological species in the wild potato Solanum brevicaule complex (sect. Petota). Amer J Bot 85: 92-109.
61. Wendel JE, Doyle JJ (1998) Phylogenetic incongruence: window into genome history and molecular evolution. In: Soltis PS, Doyle JJ (eds) Plant molecular systematics II. Kluwer Academic Publishers, Dordrecht, pp 265-296.