-
1
-
-
34249275353
-
Phenotypic plasticity and the epigenetics of human disease
-
doi:10.1038/nature05919
-
Feinberg AP, (2007) Phenotypic plasticity and the epigenetics of human disease. Nature 447: 433-440. doi:10.1038/nature05919. PubMed: 17522677.
-
(2007)
Nature
, vol.447
, pp. 433-440
-
-
Feinberg, A.P.1
-
2
-
-
2642531973
-
Epigenetics in human disease and prospects for epigenetic therapy
-
doi:10.1038/nature02625
-
Egger G, Liang G, Aparicio A, Jones PA, (2004) Epigenetics in human disease and prospects for epigenetic therapy. Nature 429: 457-463. doi:10.1038/nature02625. PubMed: 15164071.
-
(2004)
Nature
, vol.429
, pp. 457-463
-
-
Egger, G.1
Liang, G.2
Aparicio, A.3
Jones, P.A.4
-
3
-
-
37548999369
-
Computational epigenetics
-
18024971
-
Bock C, Lengauer T, (2007) Computational epigenetics. Bioinformatics 24: 1-10. PubMed: 18024971.
-
(2007)
Bioinformatics
, vol.24
, pp. 1-10
-
-
Bock, C.1
Lengauer, T.2
-
4
-
-
79953034492
-
Epigenetics: Unravelling the cancer code
-
doi:10.1038/471S12a
-
Brower V, (2011) Epigenetics: Unravelling the cancer code. Nature 471: S12-S13. doi:10.1038/471S12a. PubMed: 21430711.
-
(2011)
Nature
, vol.471
-
-
Brower, V.1
-
5
-
-
84869887497
-
DNA methylation and microRNA dysregulation in cancer
-
doi:10.1016/j.molonc.2012.07.007
-
Suzuki H, Maruyama R, Yamamoto E, Kai M, (2012) DNA methylation and microRNA dysregulation in cancer. Mol Oncol 6: 567-578. doi:10.1016/j.molonc.2012.07.007. PubMed: 22902148.
-
(2012)
Mol Oncol
, vol.6
, pp. 567-578
-
-
Suzuki, H.1
Maruyama, R.2
Yamamoto, E.3
Kai, M.4
-
7
-
-
84875145398
-
HIC1 modulates prostate cancer progression by epigentic modification
-
doi:10.1158/1078-0432.CCR-12-2888
-
Zheng J, Wang J, Sun X, Hao M, Ding T, et al. (2013) HIC1 modulates prostate cancer progression by epigentic modification. Clin Cancer Res 19: 1400-1410. doi:10.1158/1078-0432.CCR-12-2888. PubMed: 23340301.
-
(2013)
Clin Cancer Res
, vol.19
, pp. 1400-1410
-
-
Zheng, J.1
Wang, J.2
Sun, X.3
Hao, M.4
Ding, T.5
-
8
-
-
84874746425
-
Alterations in cardiac DNA methylation in human dilated cardiomyopathy
-
Haas J, Frese KS, Park YJ, Keller A, Vogel B, et al. (2013) Alterations in cardiac DNA methylation in human dilated cardiomyopathy. EMBO. Mol Med 5: 413-429.
-
(2013)
EMBO. Mol Med
, vol.5
, pp. 413-429
-
-
Haas, J.1
Frese, K.S.2
Park, Y.J.3
Keller, A.4
Vogel, B.5
-
9
-
-
84880516297
-
Serum-based DNA methylation biomarkers in colorectal cancer: potential for screening and early detection
-
doi:10.7150/jca.5839
-
Summers T, Langan RC, Nissan A, Brücher BL, Bilchik AJ, et al. (2013) Serum-based DNA methylation biomarkers in colorectal cancer: potential for screening and early detection. J Cancer 4: 210-216. doi:10.7150/jca.5839. PubMed: 23459561.
-
(2013)
J Cancer
, vol.4
, pp. 210-216
-
-
Summers, T.1
Langan, R.C.2
Nissan, A.3
Brücher, B.L.4
Bilchik, A.J.5
-
10
-
-
84862161024
-
DiseaseMeth: a human disease methylation database
-
doi:10.1093/nar/gkr1169
-
Lv J, Liu H, Su J, Wu X, Liu H, et al. (2012) DiseaseMeth: a human disease methylation database. Nucleic Acids Res 40: D1030-D1035. doi:10.1093/nar/gkr1169. PubMed: 22135302.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Lv, J.1
Liu, H.2
Su, J.3
Wu, X.4
Liu, H.5
-
11
-
-
38549099685
-
PubMeth: a cancer methylation database combining text-mining and expert annotation
-
17932060
-
Ongenaert M, Van Neste L, De Meyer T, Menschaert G, Bekaert S, et al. (2008) PubMeth: a cancer methylation database combining text-mining and expert annotation. Nucleic Acids Res 36: D842-D846. PubMed: 17932060.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Ongenaert, M.1
Van Neste, L.2
De Meyer, T.3
Menschaert, G.4
Bekaert, S.5
-
12
-
-
38549129812
-
MethyCancer: the database of human DNA methylation and cancer
-
17890243
-
He X, Chang S, Zhang J, Zhao Q, Xiang H, et al. (2008) MethyCancer: the database of human DNA methylation and cancer. Nucleic Acids Res 36: D836-D841. PubMed: 17890243.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
He, X.1
Chang, S.2
Zhang, J.3
Zhao, Q.4
Xiang, H.5
-
13
-
-
0035172139
-
MethDB-a public database for DNA methylation data
-
doi:10.1093/nar/29.1.270
-
Grunau C, Renault E, Rosenthal A, Roizes G, (2001) MethDB-a public database for DNA methylation data. Nucleic Acids Res 29: 270-274. doi:10.1093/nar/29.1.270. PubMed: 11125109.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 270-274
-
-
Grunau, C.1
Renault, E.2
Rosenthal, A.3
Roizes, G.4
-
14
-
-
0037252736
-
An improved version of the DNA Methylation database (MethDB)
-
doi:10.1093/nar/gkg093
-
Amoreira C, Hindermann W, Grunau C, (2003) An improved version of the DNA Methylation database (MethDB). Nucleic Acids Res 31: 75-77. doi:10.1093/nar/gkg093. PubMed: 12519951.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 75-77
-
-
Amoreira, C.1
Hindermann, W.2
Grunau, C.3
-
15
-
-
84858150703
-
MethylomeDB: a database of DNA methylation profiles of the brain
-
doi:10.1093/nar/gkr1193
-
Xin Y, Chanrion B, O'Donnell AH, Milekic M, Costa R, et al. (2012) MethylomeDB: a database of DNA methylation profiles of the brain. Nucleic Acids Res 40: D1245-D1249. doi:10.1093/nar/gkr1193. PubMed: 22140101.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Xin, Y.1
Chanrion, B.2
O'Donnell, A.H.3
Milekic, M.4
Costa, R.5
-
16
-
-
78651291113
-
NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data
-
doi:10.1093/nar/gkr173
-
Hackenberg M, Barturen G, Oliver JL, (2011) NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data. Nucleic Acids Res 39: D75-D79. doi:10.1093/nar/gkr173. PubMed: 20965971.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Hackenberg, M.1
Barturen, G.2
Oliver, J.L.3
-
17
-
-
39849091039
-
MeInfoText: associated gene methylation and cancer information from text mining
-
doi:10.1186/1471-2105-9-S12-S22
-
Fang YC, Huang HC, Juan HF, (2008) MeInfoText: associated gene methylation and cancer information from text mining. BMC Bioinformatics 9: 22-30. doi:10.1186/1471-2105-9-S12-S22. PubMed: 18194557.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 22-30
-
-
Fang, Y.C.1
Huang, H.C.2
Juan, H.F.3
-
18
-
-
83355161466
-
MeInfoText. p. 2.0: gene methylation and cancer relation extraction from biomedical literature
-
Fang YC, Lai PT, Dai HJ, Hsu WL, (2011) MeInfoText. p. 2.0: gene methylation and cancer relation extraction from biomedical literature. BMC Bioinformatics 12: 471-478.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 471-478
-
-
Fang, Y.C.1
Lai, P.T.2
Dai, H.J.3
Hsu, W.L.4
-
20
-
-
85013691898
-
-
Waltham: Academic Press
-
Miner G, Delen D, Elder J, Fast A, Hill T, et al. (2012) Practical text mining and statistical analysis for non-structured text data applications. Waltham: Academic Press. 46 pp.
-
(2012)
Practical Text Mining and Statistical Analysis for Non-Structured Text Data Applications
, pp. 46
-
-
Miner, G.1
Delen, D.2
Elder, J.3
Fast, A.4
Hill, T.5
-
21
-
-
0016572913
-
A vector space model for automatic indexing
-
doi:10.1145/361219.361220
-
Salton G, Wong A, Yang CS, (1975) A vector space model for automatic indexing. Commun ACM 18: 613-620. doi:10.1145/361219.361220.
-
(1975)
Commun ACM
, vol.18
, pp. 613-620
-
-
Salton, G.1
Wong, A.2
Yang, C.S.3
-
23
-
-
0034069452
-
Gene-finding approaches for eukaryotes
-
doi:10.1101/gr.10.4.394
-
Stormo GD, (2000) Gene-finding approaches for eukaryotes. Genome Res 10: 394-397. doi:10.1101/gr.10.4.394. PubMed: 10779479.
-
(2000)
Genome Res
, vol.10
, pp. 394-397
-
-
Stormo, G.D.1
-
25
-
-
84948481845
-
An algorithm for suffix stripping
-
Porter MF, (1980) An algorithm for suffix stripping. PROGRAM-ELECTRON. Lib. 14: 130-137.
-
(1980)
PROGRAM-ELECTRON. Lib
, vol.14
, pp. 130-137
-
-
Porter, M.F.1
-
27
-
-
45549117987
-
Term-weighting approaches in automatic text retrieval
-
doi:10.1016/0306-4573(88)90021-0
-
Salton G, Buckley C, (1988) Term-weighting approaches in automatic text retrieval. Inf Process Manag 24: 513-523. doi:10.1016/0306-4573(88)90021-0.
-
(1988)
Inf Process Manag
, vol.24
, pp. 513-523
-
-
Salton, G.1
Buckley, C.2
-
29
-
-
0028502095
-
Some useful statistical properties of position-weight matrices
-
doi:10.1016/0097-8485(94)85024-0
-
Claverie JM, (1994) Some useful statistical properties of position-weight matrices. Comput Chem 18: 287-294. doi:10.1016/0097-8485(94)85024-0. PubMed: 7952899.
-
(1994)
Comput Chem
, vol.18
, pp. 287-294
-
-
Claverie, J.M.1
-
30
-
-
84864426173
-
The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences
-
doi:10.1093/nar/gks602
-
Luehr S, Hartmann H, Söding J, (2012) The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences. Nucleic Acids Res 40: W104-W109. doi:10.1093/nar/gks602. PubMed: 22693218.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Luehr, S.1
Hartmann, H.2
Söding, J.3
-
31
-
-
84865177308
-
Optimizing the GATA-3 position weight matrix to improve the identification of novel binding sites
-
doi:10.1186/1471-2164-13-416
-
Nandi S, Ioshikhes I, (2012) Optimizing the GATA-3 position weight matrix to improve the identification of novel binding sites. BMC Genomics 13: 416-432. doi:10.1186/1471-2164-13-416. PubMed: 22913572.
-
(2012)
BMC Genomics
, vol.13
, pp. 416-432
-
-
Nandi, S.1
Ioshikhes, I.2
-
34
-
-
78149313084
-
CMAR: Accurate and efficient classification based on multiple class-association rules
-
San Jose, USA
-
Li W, Han J, Pei J, (2001) CMAR: Accurate and efficient classification based on multiple class-association rules. 2001 IEEE International Conference on Data Mining. San Jose, USA.
-
(2001)
2001 IEEE International Conference on Data Mining
-
-
Li, W.1
Han, J.2
Pei, J.3
-
35
-
-
84948104699
-
Integrating classification and association rule mining
-
USA, York, Fourth International Conference on Knowledge
-
Liu B, Hsu W, Ma Y, (1998) Integrating classification and association rule mining. Fourth International Conference on Knowledge Discovery and Data Mining. New York, USA.
-
(1998)
-
-
Liu, B.1
Hsu, W.2
Ma, Y.3
-
37
-
-
61749090884
-
Distance metric learning for large margin nearest neighbor classification
-
Weinberger KQ, Saul LK, (2009) Distance metric learning for large margin nearest neighbor classification. J Mach Learn Res 10: 207-244.
-
(2009)
J Mach Learn Res
, vol.10
, pp. 207-244
-
-
Weinberger, K.Q.1
Saul, L.K.2
-
38
-
-
0003408420
-
-
Cambridge: MIT Press
-
Schölkopf B, Smola AJ, (2002) Learning with kernels: Support vector machines, regularization, optimization, and beyond. Cambridge: MIT Press. pp. pp. 1-21.
-
(2002)
Learning with Kernels: Support Vector Machines, Regularization, Optimization, and beyond
, pp. 1-21
-
-
Schölkopf, B.1
Smola, A.J.2
-
40
-
-
0035478854
-
Random forests
-
Breiman L, (2001) Random forests. Mach. Learn. 45: 5-32.
-
(2001)
Mach. Learn
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
41
-
-
0001981461
-
The continuum random tree I
-
doi:10.1214/aop/1176990534
-
Aldous D, (1991) The continuum random tree I. Ann Probab 19: 1-28. doi:10.1214/aop/1176990534.
-
(1991)
Ann Probab
, vol.19
, pp. 1-28
-
-
Aldous, D.1
-
42
-
-
0002442796
-
Machine learning in automated text categorization
-
doi:10.1145/505282.505283
-
Sebastiani F, (2002) Machine learning in automated text categorization. ACM Comput Surv 34: 1-47. doi:10.1145/505282.505283.
-
(2002)
ACM Comput Surv
, vol.34
, pp. 1-47
-
-
Sebastiani, F.1
-
43
-
-
76749092270
-
The WEKA data mining software: an update
-
doi:10.1145/1656274.1656278
-
Hall M, Frank E, Holmes G, Pfahringer B, Reutemann P, et al. (2009) The WEKA data mining software: an update. SIGKDD Explor Newsl 11: 10-18. doi:10.1145/1656274.1656278.
-
(2009)
SIGKDD Explor Newsl
, vol.11
, pp. 10-18
-
-
Hall, M.1
Frank, E.2
Holmes, G.3
Pfahringer, B.4
Reutemann, P.5
-
45
-
-
84865981409
-
A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions
-
doi:10.1016/j.jbi.2012.04.006
-
Hakenberg J, Voronov D, Nguyên VH, Liang S, Anwar S, et al. (2012) A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions. J Biomed Inform 45: 842-850. doi:10.1016/j.jbi.2012.04.006. PubMed: 22564364.
-
(2012)
J Biomed Inform
, vol.45
, pp. 842-850
-
-
Hakenberg, J.1
Voronov, D.2
Nguyên, V.H.3
Liang, S.4
Anwar, S.5
-
46
-
-
33751088706
-
Extraction of gene-disease relations from Medline using domain dictionaries and machine learning
-
PubMed, 17094223
-
Chun HW, Tsuruoka Y, Kim JD, Shiba R, Nagata N, et al. (2006) Extraction of gene-disease relations from Medline using domain dictionaries and machine learning. Proceedings of the Pacific Symposium on Biocomputing (PSB) 11. Maui, USA. PubMed: 17094223.
-
(2006)
Proceedings of the Pacific Symposium on Biocomputing (PSB) 11
-
-
Chun, H.W.1
Tsuruoka, Y.2
Kim, J.D.3
Shiba, R.4
Nagata, N.5
-
47
-
-
78149308924
-
Using text to build semantic networks for pharmacogenomics
-
doi:10.1016/j.jbi.2010.08.005
-
Coulet A, Shah NH, Garten Y, Musen M, Altman RB, (2010) Using text to build semantic networks for pharmacogenomics. J Biomed Inform 43: 1009-1019. doi:10.1016/j.jbi.2010.08.005. PubMed: 20723615.
-
(2010)
J Biomed Inform
, vol.43
, pp. 1009-1019
-
-
Coulet, A.1
Shah, N.H.2
Garten, Y.3
Musen, M.4
Altman, R.B.5
|