Identification of a region within the placental alkaline phosphatase mRNA that mediates p180-dependent targeting to the endoplasmic reticulum

Journal of Biological Chemistry

Volumn 288, Issue 41, 2013, Pages 29633-29641

  Cui, Xianying A ^a   Zhang, Yangjing ^a   Hong, Seo Jung ^a   Palazzo, Alexander F ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINE PHOSPHATASE; CIS ACTINGS; ENDOPLASMIC RETICULUM; MAMMALIAN CELLS; MEMBRANE PROTEINS; OPEN READING FRAME; PROKARYOTIC CELLS; TRANS-MEMBRANE DOMAINS;

ACTIVATION ANALYSIS; CELL MEMBRANES; PHOSPHATASES;

RNA;

ALKALINE PHOSPHATASE PLACENTA ISOENZYME; CELL PROTEIN; CIS ACTING ELEMENT; MESSENGER RNA; PROTEIN P180; UNCLASSIFIED DRUG;

ARTICLE; CHIMERA; CONTROLLED STUDY; ENDOPLASMIC RETICULUM; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN TARGETING;

MRNA; PROTEIN SECRETION; RIBONUCLEAR PROTEIN (RNP); RNA TRANSPORT; SUBCELLULAR ORGANELLES;

ALKALINE PHOSPHATASE; ANIMALS; BINDING SITES; BLOTTING, NORTHERN; BLOTTING, WESTERN; CELL LINE, TUMOR; CERCOPITHECUS AETHIOPS; COS CELLS; ENDOPLASMIC RETICULUM; FLUORESCENT ANTIBODY TECHNIQUE; GPI-LINKED PROTEINS; HUMANS; ISOENZYMES; PROTEIN BIOSYNTHESIS; RECEPTORS, CYTOPLASMIC AND NUCLEAR; RNA INTERFERENCE; RNA, MESSENGER;

EID: 84885645857     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M113.482505     Document Type: Article

References (29)

1. Walter, P., Ibrahimi, I., and Blobel, G. (1981) Translocation of proteins across the endoplasmic reticulum. I. Signal recognition protein (SRP) binds to in vitro-assembled polysomes synthesizing secretory protein. J. Cell Biol. 91, 545-550
2. Gilmore, R., Blobel, G., and Walter, P. (1982) Protein translocation across the endoplasmic reticulum. I. Detection in the microsomal membrane of a receptor for the signal recognition particle. J. Cell Biol. 95, 463-469
3. Görlich, D., Prehn, S., Hartmann, E., Kalies, K. U., and Rapoport, T. A. (1992) A mammalian homolog of SEC61p and SECYp is associated with ribosomes and nascent polypeptides during translocation. Cell 71, 489-503
4. Görlich, D., and Rapoport, T. A. (1993) Protein translocation into proteoliposomes reconstituted from purified components of the endoplasmic reticulum membrane. Cell 75, 615-630
5. Nevo-Dinur, K., Nussbaum-Shochat, A., Ben-Yehuda, S., and Amster-Choder, O. (2011) Translation-independent localization of mRNA in E. coli. Science 331, 1081-1084
6. Pyhtila, B., Zheng, T., Lager, P. J., Keene, J. D., Reedy, M. C., and Nicchitta, C. V. (2008) Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum. RNA 14, 445-453
7. Cui, X. A., Zhang, H., and Palazzo, A. F. (2012) p180 promotes the ribosome- independent localization of a subset of mRNA to the endoplasmic reticulum. PLoS Biol. 10, e1001336
8. Lerner, R. S., Seiser, R. M., Zheng, T., Lager, P. J., Reedy, M. C., Keene, J. D., and Nicchitta, C. V. (2003) Partitioning and translation of mRNAs encoding soluble proteins on membrane-bound ribosomes. RNA 9, 1123-1137
9. Cui, X. A., and Palazzo, A. F. (2012) Visualization of endoplasmic reticulum localized mRNAs in mammalian cells. J. Vis. Exp. 70, e50066
10. Bibi, E. (2011) Early targeting events during membrane protein biogenesis in Escherichia coli. Biochim. Biophys. Acta 1808, 841-850
11. van den Ent, F., and Löwe, J. (2006) RF cloning: a restriction-free method for inserting target genes into plasmids. J. Biochem. Biophys. Methods 67, 67-74
12. Palazzo, A. F., Springer, M., Shibata, Y., Lee, C. S., Dias, A. P., and Rapoport, T. A. (2007) The signal sequence coding region promotes nuclear export of mRNA. PLoS Biol. 5, e322
13. Cenik, C., Chua, H. N., Zhang, H., Tarnawsky, S. P., Akef, A., Derti, A., Tasan, M., Moore, M. J., Palazzo, A. F., and Roth, F. P. (2011) Genome analysis reveals interplay between 5'-UTR introns and nuclear mRNA export for secretory and mitochondrial genes. PLoS Genetics 7, e1001366
14. Gueroussov, S., Tarnawsky, S. P., Cui, X. A., Mahadevan, K., and Palazzo, A. F. (2010) Analysis ofmRNAnuclear export kinetics in mammalian cells by microinjection. J. Vis. Exp. 46, 2387
15. Görlich, D., Prehn, S., Hartmann, E., Herz, J., Otto, A., Kraft, R., Wiedmann, M., Knespel, S., Dobberstein, B., and Rapoport, T. A. (1990) The signal sequence receptor has a second subunit and is part of a translocation complex in the endoplasmic reticulum as probed by bifunctional reagents. J. Cell Biol. 111, 2283-2294
16. Zhou, Z., Luo, M. J., Straesser, K., Katahira, J., Hurt, E., and Reed, R. (2000) The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans. Nature 407, 401-405
17. Mahadevan, K., Zhang, H., Akef, A., Cui, X. A., Gueroussov, S., Cenik, C., Roth, F. P., and Palazzo, A. F. (2013) RanBP2/Nup358 potentiates the translation of a subset of mRNAs encoding secretory proteins. PLoS Biol. 11, e1001545
18. Fresno, M., Jiménez, A., and Vázquez, D. (1977) Inhibition of translation in eukaryotic systems by harringtonine. Eur. J. Biochem. 72, 323-330
19. Amthauer, R., Kodukula, K., and Udenfriend, S. (1992) Placental alkaline phosphatase: a model for studying COOH-terminal processing of phos-phatidylinositol-glycan-anchored membrane proteins. Clin. Chem. 38, 2510-2516
20. Petersen, T. N., Brunak, S., von Heijne, G., and Nielsen, H. (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods 8, 785-786
21. Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305, 567-580
22. Kyte, J., and Doolittle, R. F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157, 105-132
23. Ueno, T., Kaneko, K., Sata, T., Hattori, S., and Ogawa-Goto, K. (2012) Regulation of polysome assembly on the endoplasmic reticulum by a coiled-coil protein, p180. Nucleic Acids Res. 40, 3006-3017
24. Dejgaard, K., Theberge, J. F., Heath-Engel, H., Chevet, E., Tremblay, M. L., and Thomas, D. Y. (2010) Organization of the Sec61 translocon, studied by high resolution native electrophoresis. J. Proteome Res. 9, 1763-1771
25. Palazzo, A. F., Mahadevan, K., and Tarnawsky, S. P. (2013) ALREX-elements and introns: two identity elements that promote mRNA nuclear export. WIREs RNA 4, 523-533
26. Prilusky, J., and Bibi, E. (2009) Studying membrane proteins through the eyes of the genetic code revealed a strong uracil bias in their coding mRNAs. Proc. Natl. Acad. Sci. U.S.A. 106, 6662-6666
27. Loya, A., Pnueli, L., Yosefzon, Y., Wexler, Y., Ziv-Ukelson, M., and Arava, Y. (2008) The 3'-UTR mediates the cellular localization of an mRNA encoding a short plasma membrane protein. RNA 14, 1352-1365
28. Kraut-Cohen, J., Afanasieva, E., Haim-Vilmovsky, L., Slobodin, B., Yosef, I., Bibi, E., and Gerst, J. E. (August 7, 2013) Translation- and SRP-independent mRNA targeting to the endoplasmic reticulum in the yeast, Saccharomyces cerevisiae. Mol. Biol. Cell 10.1091/mbc.E13-01-0038
29. Anderson, P., and Kedersha, N. (2006) RNA granules. J. Cell Biol. 172, 803-808