-
1
-
-
84975795680
-
An integrated map of genetic variation from 1092 human genomes
-
The 1000 Genome Project Consortium
-
The 1000 Genome Project Consortium. (2012) An integrated map of genetic variation from 1092 human genomes. Nature, 491, 56-65
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
-
2
-
-
84864341757
-
A public resource facilitating clinical use of genomes
-
Ball, M.P. et al. (2012) A public resource facilitating clinical use of genomes. Proc. Natl Acad. Sci. USA, 109, 11920-11927
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 11920-11927
-
-
Ball, M.P.1
-
3
-
-
84875363204
-
Compression of fastq and samformat sequencing data
-
Bonfield, J.K. and Mahoney, M.V. (2013) Compression of FASTQ and SAMformat sequencing data. PLoS One, 8, e59190
-
(2013)
PLoS One
, vol.8
-
-
Bonfield, J.K.1
Mahoney, M.V.2
-
4
-
-
84861760100
-
Large-scale compression of genomic sequence databases with the burrows-wheeler transform
-
Cox, A.J. et al. (2012) Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. Bioinformatics, 28, 1415-1419
-
(2012)
Bioinformatics
, vol.28
, pp. 1415-1419
-
-
Cox, A.J.1
-
5
-
-
84866741131
-
A simple statistical algorithm for biological sequence compression
-
IEEE Computer Society Press. IEEE Computer Society, Washington, DC, USA
-
Cao, M.D. et al. (2007) A simple statistical algorithm for biological sequence compression. In: Proceedings of the Data Compression Conference IEEE Computer Society Press. IEEE Computer Society, Washington, DC, USA, p. 4352
-
(2007)
Proceedings of the Data Compression Conference
, pp. 4352
-
-
Cao, M.D.1
-
6
-
-
58349097721
-
Human genomes as email attachments
-
Christley, S. et al. (2009) Human genomes as email attachments. Bioinformatics, 25, 274-275
-
(2009)
Bioinformatics
, vol.25
, pp. 274-275
-
-
Christley, S.1
-
7
-
-
77956153823
-
Compressed q-gram indexing for highly repetitive biological sequences
-
Philadelphia, Pennsylvania, USA
-
Claude, F. et al. (2010) Compressed q-gram indexing for highly repetitive biological sequences. In: Proceedings of the 10th IEEE Conference on Bioinformatics and Bioengineering. Philadelphia, Pennsylvania, USA, pp. 86-91
-
(2010)
Proceedings of the 10th IEEE Conference on Bioinformatics and Bioengineering
, pp. 86-91
-
-
Claude, F.1
-
8
-
-
79960405019
-
The variant call format and vcftools
-
Danecek, P. et al. (2011) The variant call format and VCFtools. Bioinformatics, 27, 2156-2158
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
-
9
-
-
80054918493
-
Robust relative compression of genomes with random access
-
Deorowicz, S. and Grabowski, S. (2011) Robust relative compression of genomes with random access. Bioinformatics, 27, 2979-2986
-
(2011)
Bioinformatics
, vol.27
, pp. 2979-2986
-
-
Deorowicz, S.1
Grabowski, S.2
-
10
-
-
84861205393
-
Fast relative lempel-ziv self-index for similar sequences
-
Snoeyink, J. et al. (ed. Springer, Beijing, China
-
Do, H.H. et al. (2012) Fast relative Lempel-Ziv self-index for similar sequences. In: Snoeyink, J. et al. (ed.) Proceedings of the Joint International Conference on Frontiers in Algorithmics and Algorithmic Aspects in Information and Management (FAW-AAIM). Springer, Beijing, China, pp. 291-302
-
(2012)
Proceedings of the Joint International Conference on Frontiers in Algorithmics and Algorithmic Aspects in Information and Management (FAW-AAIM
, pp. 291-302
-
-
Do, H.H.1
-
11
-
-
84857847846
-
Afaster grammar-based self-index
-
Dediu, A.H. andMartín-Vide, C. (eds Springer, A Coruñ a, Spain
-
Gagie, T. et al. (2012)Afaster grammar-based self-index. In:Dediu, A.H. andMartín-Vide, C. (eds) Proceedings of the 6th International Conference on Language and Automata Theory and Applications. Springer, A Coruñ a, Spain, pp. 240-251
-
(2012)
Proceedings of the 6th International Conference on Language and Automata Theory and Applications
, pp. 240-251
-
-
Gagie, T.1
-
12
-
-
84055199877
-
Faster approximate pattern matching in compressed repetitive texts
-
Asano, T. et al. (ed. Springer, Yokohama, Japan
-
Gagie, T. et al. (2011) Faster approximate pattern matching in compressed repetitive texts. In: Asano, T. et al. (ed.) Proceedings of the 22nd International Symposium on Algorithms and Computation. Springer, Yokohama, Japan, pp. 653-662
-
(2011)
Proceedings of the 22nd International Symposium on Algorithms and Computation
, pp. 653-662
-
-
Gagie, T.1
-
13
-
-
84870429157
-
Scalce: Boosting sequence compression algorithms using locally consistent encoding
-
Hach, F. et al. (2012) SCALCE: Boosting sequence compression algorithms using locally consistent encoding. Bioinformatics, 28, 3051-3057
-
(2012)
Bioinformatics
, vol.28
, pp. 3051-3057
-
-
Hach, F.1
-
14
-
-
84871199924
-
Compression of next-generation sequencing reads aided by highly efficient de novo assembly
-
Jones, D.C. et al. (2012) Compression of next-generation sequencing reads aided by highly efficient de novo assembly. Nucleic Acids Res., 40, e171
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Jones, D.C.1
-
15
-
-
84876408746
-
On compressing and indexing repetitive sequences
-
Kreft, S. and Navarro, G. (2013) On compressing and indexing repetitive sequences. Theor. Comput. Sci., 483, 115-133
-
(2013)
Theor. Comput. Sci
, vol.483
, pp. 115-133
-
-
Kreft, S.1
Navarro, G.2
-
16
-
-
84857880849
-
Optimized relative lempel-ziv compression of genomes
-
Reynolds, M. (ed. Australian Computer Society, Inc., Sydney, Australia, pp.
-
Kuruppu, S. et al. (2011) Optimized relative Lempel-Ziv compression of genomes. In: Reynolds, M. (ed.) Proceedings of the ACSC Australasian Computer Science Conference. Australian Computer Society, Inc., Sydney, Australia, pp. 91-98
-
(2011)
Proceedings of the ACSC Australasian Computer Science Conference
, pp. 91-98
-
-
Kuruppu, S.1
-
17
-
-
35648976118
-
The diploid genome sequence of an individual human
-
Levy, S. et al. (2007) The diploid genome sequence of an individual human. PLoS Biol., 5, e254
-
(2007)
PLoS Biol
, vol.5
-
-
Levy, S.1
-
18
-
-
77950788830
-
Storage and retrieval of highly repetitive sequence collections
-
Mä kinen, V. et al. (2010) Storage and retrieval of highly repetitive sequence collections. J. Comput. Biol., 17, 281-308
-
(2010)
J. Comput. Biol
, vol.17
, pp. 281-308
-
-
Mäkinen, V.1
-
19
-
-
8344261403
-
A simple and fast DNA compressor
-
Manzini, G. and Rastero, M. (2004) A simple and fast DNA compressor. Software Pract. Ex., 34, 1397-1411
-
(2004)
Software Pract. Ex.
, vol.34
, pp. 1397-1411
-
-
Manzini, G.1
Rastero, M.2
-
20
-
-
84882651968
-
The human genome contracts again
-
Pavlichin, D. et al. (2013) The human genome contracts again. Bioinformatics, 29, 2199-2202
-
(2013)
Bioinformatics
, vol.29
, pp. 2199-2202
-
-
Pavlichin, D.1
-
21
-
-
79959722141
-
On the representability of complete genomes by multiple competing finite-context (markov) models
-
Pinho, A.J. et al. (2011) On the representability of complete genomes by multiple competing finite-context (Markov) models. PLoS One, 6, e21588
-
(2011)
PLoS One
, vol.6
-
-
Pinho, A.J.1
-
22
-
-
84857860662
-
Green: A tool for efficient compression of genome resequencing data
-
Pinho, A.J. et al. (2012) GReEn: A tool for efficient compression of genome resequencing data. Nucleic Acids Res., 40, e27
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pinho, A.J.1
-
23
-
-
84871807049
-
Ngc: Lossless and lossy compression of aligned high-Throughput sequencing data
-
Popitsch, N. and von Haeseler, A. (2013) NGC: Lossless and lossy compression of aligned high-Throughput sequencing data. Nucleic Acids Res., 41, e27
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Popitsch, N.1
Von Haeseler, A.2
-
24
-
-
84860994058
-
Handling the data management needs of high-Throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data
-
Qiao, D. et al. (2012) Handling the data management needs of high-Throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data. BMC Bioinformatics, 13, 100
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 100
-
-
Qiao, D.1
-
26
-
-
0020190931
-
Data compression via textual substitution
-
Storer, J.A. and Szymanski, T.G. (1982) Data compression via textual substitution. J. ACM, 29, 928-951
-
(1982)
J. ACM
, vol.29
, pp. 928-951
-
-
Storer, J.A.1
Szymanski, T.G.2
-
27
-
-
84868670481
-
Adaptive efficient compression of genomes
-
Wandelt, S. and Leser, U. (2012) Adaptive efficient compression of genomes. Algorithms Mol. Biol., 7, 30
-
(2012)
Algorithms Mol. Biol
, vol.7
, pp. 30
-
-
Wandelt, S.1
Leser, U.2
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