-
1
-
-
70350381756
-
Diversity of endodontic microbiota revisited
-
Siqueira JF Jr, Rôças IN, (2009) Diversity of endodontic microbiota revisited. J Dent Res 88: 969-981.
-
(2009)
J Dent Res
, vol.88
, pp. 969-981
-
-
Siqueira Jr., J.F.1
Rôças, I.N.2
-
2
-
-
79959405576
-
Exploring bacterial diversity of endodontic microbiota by cloning and sequencing 16S rRNA
-
Ribeiro AC, Matarazzo F, Faveri M, Zezell DM, Mayer MP, (2011) Exploring bacterial diversity of endodontic microbiota by cloning and sequencing 16S rRNA. J Endod 37: 922-926.
-
(2011)
J Endod
, vol.37
, pp. 922-926
-
-
Ribeiro, A.C.1
Matarazzo, F.2
Faveri, M.3
Zezell, D.M.4
Mayer, M.P.5
-
3
-
-
33846236833
-
Bacterial reduction and persistence after endodontic treatment procedures
-
Sakamoto M, Siqueira JF Jr, Rôças IN, Benno Y, (2007) Bacterial reduction and persistence after endodontic treatment procedures. Oral Microbiol Immunol 22: 19-23.
-
(2007)
Oral Microbiol Immunol
, vol.22
, pp. 19-23
-
-
Sakamoto, M.1
Siqueira Jr., J.F.2
Rôças, I.N.3
Benno, Y.4
-
4
-
-
33645127794
-
Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections
-
Sakamoto M, Rôças IN, Siqueira JF Jr, Benno Y, (2006) Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections. Oral Microbiol Immunol 21: 112-122.
-
(2006)
Oral Microbiol Immunol
, vol.21
, pp. 112-122
-
-
Sakamoto, M.1
Rôças, I.N.2
Siqueira Jr., J.F.3
Benno, Y.4
-
5
-
-
0036828242
-
Molecular and cultural analysis of the microflora associated with endodontic infections
-
Munson MA, Pitt-Ford T, Chong B, Weightman A, Wade WG, (2002) Molecular and cultural analysis of the microflora associated with endodontic infections. J Dent Res 81: 761-766.
-
(2002)
J Dent Res
, vol.81
, pp. 761-766
-
-
Munson, M.A.1
Pitt-Ford, T.2
Chong, B.3
Weightman, A.4
Wade, W.G.5
-
6
-
-
77955423520
-
Biofilms and apical periodontitis: study of prevalence and association with clinical and histopathologic findings
-
Ricucci D, Siqueira JF Jr, (2010) Biofilms and apical periodontitis: study of prevalence and association with clinical and histopathologic findings. J Endod 36: 1277-1288.
-
(2010)
J Endod
, vol.36
, pp. 1277-1288
-
-
Ricucci, D.1
Siqueira Jr., J.F.2
-
7
-
-
65649126006
-
Community as the unit of pathogenicity: an emerging concept as to the microbial pathogenesis of apical periodontitis
-
Siqueira JF Jr, Rôças IN, (2009) Community as the unit of pathogenicity: an emerging concept as to the microbial pathogenesis of apical periodontitis. Oral Surg Oral Med Oral Pathol Oral Radiol Endod 107: 870-878.
-
(2009)
Oral Surg Oral Med Oral Pathol Oral Radiol Endod
, vol.107
, pp. 870-878
-
-
Siqueira Jr., J.F.1
Rôças, I.N.2
-
8
-
-
34248165412
-
Metaproteomics: a new approach for studying functional microbial ecology
-
Maron PA, Ranjard L, Mougel C, Lemanceau P, (2007) Metaproteomics: a new approach for studying functional microbial ecology. Microb Ecol 53: 486-493.
-
(2007)
Microb Ecol
, vol.53
, pp. 486-493
-
-
Maron, P.A.1
Ranjard, L.2
Mougel, C.3
Lemanceau, P.4
-
9
-
-
0030333694
-
Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it
-
Wilkins MR, Sanchez JC, Gooley AA, Appel RD, Humphery-Smith I, et al. (1996) Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. Biotechnol Genet Eng Rev 13: 19-50.
-
(1996)
Biotechnol Genet Eng Rev
, vol.13
, pp. 19-50
-
-
Wilkins, M.R.1
Sanchez, J.C.2
Gooley, A.A.3
Appel, R.D.4
Humphery-Smith, I.5
-
10
-
-
4344646435
-
The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms
-
Wilmes P, Bond PL, (2004) The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms. Environ Microbiol 6: 911-920.
-
(2004)
Environ Microbiol
, vol.6
, pp. 911-920
-
-
Wilmes, P.1
Bond, P.L.2
-
11
-
-
77149152780
-
Environmental proteomics: analysis of structure and function of microbial communities
-
Schneider T, Riedel K, (2010) Environmental proteomics: analysis of structure and function of microbial communities. Proteomics 10: 785-798.
-
(2010)
Proteomics
, vol.10
, pp. 785-798
-
-
Schneider, T.1
Riedel, K.2
-
12
-
-
0034757770
-
Proteomics: the move to mixtures
-
Peng J, Gygi SP, (2001) Proteomics: the move to mixtures. J Mass Spectrom 36: 1083-1091.
-
(2001)
J Mass Spectrom
, vol.36
, pp. 1083-1091
-
-
Peng, J.1
Gygi, S.P.2
-
13
-
-
84873370176
-
Computational approaches to protein inference in shotgun proteomics
-
Li YF, Radivojac P, (2012) Computational approaches to protein inference in shotgun proteomics. BMC Bioinformatics 13Suppl 16: S4.
-
(2012)
BMC Bioinformatics
, vol.13
-
-
Li, Y.F.1
Radivojac, P.2
-
14
-
-
4444335470
-
The ABC's (and XYZ's) of peptide sequencing
-
Steen H, Mann M, (2004) The ABC's (and XYZ's) of peptide sequencing. Nat Rev Mol Cell Biol 5: 699-711.
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
15
-
-
84861230321
-
Current use of high-resolution mass spectrometry in the environmental sciences
-
Hernandez F, Sancho JV, Ibanez M, Abad E, Portoles T, et al. (2012) Current use of high-resolution mass spectrometry in the environmental sciences. Anal Bioanal Chem 403: 1251-1264.
-
(2012)
Anal Bioanal Chem
, vol.403
, pp. 1251-1264
-
-
Hernandez, F.1
Sancho, J.V.2
Ibanez, M.3
Abad, E.4
Portoles, T.5
-
16
-
-
67649158966
-
Proteomic analysis of endodontic infections by liquid chromatography-tandem mass spectrometry
-
Nandakumar R, Madayiputhiya N, Fouad AF, (2009) Proteomic analysis of endodontic infections by liquid chromatography-tandem mass spectrometry. Oral Microbiol Immunol 24: 347-352.
-
(2009)
Oral Microbiol Immunol
, vol.24
, pp. 347-352
-
-
Nandakumar, R.1
Madayiputhiya, N.2
Fouad, A.F.3
-
17
-
-
0017807444
-
A linear Lowry-Folin assay for both water-soluble and sodium dodecyl sulfate-solubilized proteins
-
Hess HH, Less MB, Derr JE, (1978) A linear Lowry-Folin assay for both water-soluble and sodium dodecyl sulfate-solubilized proteins. Anal Biochem 85: 295-300.
-
(1978)
Anal Biochem
, vol.85
, pp. 295-300
-
-
Hess, H.H.1
Less, M.B.2
Derr, J.E.3
-
19
-
-
79951854037
-
Biology of Streptococcus mutans-derived glucosyltransferases: role in extracellular matrix formation of cariogenic biofilms
-
Bowen WH, Koo H, (2011) Biology of Streptococcus mutans-derived glucosyltransferases: role in extracellular matrix formation of cariogenic biofilms. Caries Res 45: 69-86.
-
(2011)
Caries Res
, vol.45
, pp. 69-86
-
-
Bowen, W.H.1
Koo, H.2
-
20
-
-
79953644934
-
Deletion of the glycosyltransferase bgsB of Enterococcus faecalis leads to a complete loss of glycolipids from the cell membrane and to impaired biofilm formation
-
Theilacker C, Sava I, Sanchez-Carballo P, Bao Y, Kropec A, et al. (2011) Deletion of the glycosyltransferase bgsB of Enterococcus faecalis leads to a complete loss of glycolipids from the cell membrane and to impaired biofilm formation. BMC Microbiol 11: 67.
-
(2011)
BMC Microbiol
, vol.11
, pp. 67
-
-
Theilacker, C.1
Sava, I.2
Sanchez-Carballo, P.3
Bao, Y.4
Kropec, A.5
-
21
-
-
53349165891
-
Bacterial pathogenesis and mediators in apical periodontitis
-
Siqueira JF Jr, Rôças IN, (2007) Bacterial pathogenesis and mediators in apical periodontitis. Braz Dent J 18: 267-280.
-
(2007)
Braz Dent J
, vol.18
, pp. 267-280
-
-
Siqueira Jr., J.F.1
Rôças, I.N.2
-
22
-
-
0032894568
-
Streptococcal pyrogenic exotoxin B induces apoptosis and reduces phagocytic activity in U937 cells
-
Kuo CF, Wu JJ, Tsai PJ, Kao FJ, Lei HY, et al. (1999) Streptococcal pyrogenic exotoxin B induces apoptosis and reduces phagocytic activity in U937 cells. Infect Immun 67: 126-130.
-
(1999)
Infect Immun
, vol.67
, pp. 126-130
-
-
Kuo, C.F.1
Wu, J.J.2
Tsai, P.J.3
Kao, F.J.4
Lei, H.Y.5
-
23
-
-
1642493657
-
Adhesins and invasins of pathogenic bacteria: a structural view
-
Niemann HH, Schubert WD, Heinz DW, (2004) Adhesins and invasins of pathogenic bacteria: a structural view. Microbes Infect 6: 101-112.
-
(2004)
Microbes Infect
, vol.6
, pp. 101-112
-
-
Niemann, H.H.1
Schubert, W.D.2
Heinz, D.W.3
-
24
-
-
0642367527
-
Oral microbial heat-shock proteins and their potential contributions to infections
-
Goulhen F, Grenier D, Mayrand D, (2003) Oral microbial heat-shock proteins and their potential contributions to infections. Crit Rev Oral Biol Med 14: 399-412.
-
(2003)
Crit Rev Oral Biol Med
, vol.14
, pp. 399-412
-
-
Goulhen, F.1
Grenier, D.2
Mayrand, D.3
-
25
-
-
0001588962
-
Purification and characterization of the heat shock proteins HslV and HslU that form a new ATP-dependent protease in Escherichia coli
-
Yoo SJ, Seol JH, Shin DH, Rohrwild M, Kang MS, et al. (1996) Purification and characterization of the heat shock proteins HslV and HslU that form a new ATP-dependent protease in Escherichia coli. J Biol Chem 271: 14035-14040.
-
(1996)
J Biol Chem
, vol.271
, pp. 14035-14040
-
-
Yoo, S.J.1
Seol, J.H.2
Shin, D.H.3
Rohrwild, M.4
Kang, M.S.5
-
26
-
-
33745589526
-
Stress wars: the direct role of host and bacterial molecular chaperones in bacterial infection
-
Henderson B, Allan E, Coates AR, (2006) Stress wars: the direct role of host and bacterial molecular chaperones in bacterial infection. Infect Immun 74: 3693-3706.
-
(2006)
Infect Immun
, vol.74
, pp. 3693-3706
-
-
Henderson, B.1
Allan, E.2
Coates, A.R.3
-
27
-
-
13644264825
-
Oxidative stress response in an anaerobic hyperthermophilic archaeon: presence of a functional peroxiredoxin in Pyrococcus horikoshii
-
Kawakami R, Sakuraba H, Kamohara S, Goda S, Kawarabayasi Y, et al. (2004) Oxidative stress response in an anaerobic hyperthermophilic archaeon: presence of a functional peroxiredoxin in Pyrococcus horikoshii. J Biochem 136: 541-547.
-
(2004)
J Biochem
, vol.136
, pp. 541-547
-
-
Kawakami, R.1
Sakuraba, H.2
Kamohara, S.3
Goda, S.4
Kawarabayasi, Y.5
-
28
-
-
33845640610
-
Stimulus perception in bacterial signal-transducing histidine kinases
-
Mascher T, Helmann JD, Unden G, (2006) Stimulus perception in bacterial signal-transducing histidine kinases. Microbiol Mol Biol Rev 70: 910-938.
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 910-938
-
-
Mascher, T.1
Helmann, J.D.2
Unden, G.3
-
29
-
-
0035887167
-
Different combinations of the heat-shock cognate protein 70 (hsc70) C-terminal functional groups are utilized to interact with distinct tetratricopeptide repeat-containing proteins
-
Wu SJ, Liu FH, Hu SM, Wang C, (2001) Different combinations of the heat-shock cognate protein 70 (hsc70) C-terminal functional groups are utilized to interact with distinct tetratricopeptide repeat-containing proteins. Biochem J 359: 419-426.
-
(2001)
Biochem J
, vol.359
, pp. 419-426
-
-
Wu, S.J.1
Liu, F.H.2
Hu, S.M.3
Wang, C.4
-
30
-
-
0344628648
-
TPR proteins: the versatile helix
-
D'Andrea LD, Regan L, (2003) TPR proteins: the versatile helix. Trends Biochem Sci 28: 655-662.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 655-662
-
-
D'Andrea, L.D.1
Regan, L.2
-
32
-
-
0037291360
-
Oxidative-stress-inducible qorA encodes an NADPH-dependent quinone oxidoreductase catalysing a one-electron reduction in Staphylococcus aureus
-
Maruyama A, Kumagai Y, Morikawa K, Taguchi K, Hayashi H, et al. (2003) Oxidative-stress-inducible qorA encodes an NADPH-dependent quinone oxidoreductase catalysing a one-electron reduction in Staphylococcus aureus. Microbiology 149: 389-398.
-
(2003)
Microbiology
, vol.149
, pp. 389-398
-
-
Maruyama, A.1
Kumagai, Y.2
Morikawa, K.3
Taguchi, K.4
Hayashi, H.5
-
33
-
-
77953206132
-
Recent findings on the viable but nonculturable state in pathogenic bacteria
-
Oliver JD, (2010) Recent findings on the viable but nonculturable state in pathogenic bacteria. FEMS Microbiol Rev 34: 415-425.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 415-425
-
-
Oliver, J.D.1
-
34
-
-
80052611381
-
Toxin-antitoxin systems influence biofilm and persister cell formation and the general stress response
-
Wang X, Wood TK, (2011) Toxin-antitoxin systems influence biofilm and persister cell formation and the general stress response. Appl Environ Microbiol 77: 5577-5583.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 5577-5583
-
-
Wang, X.1
Wood, T.K.2
-
35
-
-
0024811787
-
Bacterial adaptation to oxidative stress: implications for pathogenesis and interaction with phagocytic cells
-
Hassett DJ, Cohen MS, (1989) Bacterial adaptation to oxidative stress: implications for pathogenesis and interaction with phagocytic cells. FASEB J 3: 2574-2582.
-
(1989)
FASEB J
, vol.3
, pp. 2574-2582
-
-
Hassett, D.J.1
Cohen, M.S.2
-
36
-
-
80052897903
-
Antibiotic resistance in primary and persistent endodontic infections
-
Jungermann GB, Burns K, Nandakumar R, Tolba M, Venezia RA, et al. (2011) Antibiotic resistance in primary and persistent endodontic infections. J Endod 37: 1337-1344.
-
(2011)
J Endod
, vol.37
, pp. 1337-1344
-
-
Jungermann, G.B.1
Burns, K.2
Nandakumar, R.3
Tolba, M.4
Venezia, R.A.5
-
37
-
-
84870358526
-
Antibiotic resistance genes in anaerobic bacteria isolated from primary dental root canal infections
-
Rôças IN, Siqueira JF Jr, (2012) Antibiotic resistance genes in anaerobic bacteria isolated from primary dental root canal infections. Anaerobe 18: 576-580.
-
(2012)
Anaerobe
, vol.18
, pp. 576-580
-
-
Rôças, I.N.1
Siqueira Jr., J.F.2
-
38
-
-
84875748732
-
Microbiology and treatment of acute apical abscesses
-
Siqueira JF Jr, Rôças IN, (2013) Microbiology and treatment of acute apical abscesses. Clin Microbiol Rev 26: 255-273.
-
(2013)
Clin Microbiol Rev
, vol.26
, pp. 255-273
-
-
Siqueira Jr., J.F.1
Rôças, I.N.2
-
39
-
-
0037607477
-
A new solution for the removal of the smear layer
-
Torabinejad M, Khademi AA, Babagoli J, Cho Y, Johnson WB, et al. (2003) A new solution for the removal of the smear layer. J Endod 29: 170-175.
-
(2003)
J Endod
, vol.29
, pp. 170-175
-
-
Torabinejad, M.1
Khademi, A.A.2
Babagoli, J.3
Cho, Y.4
Johnson, W.B.5
-
40
-
-
0030089554
-
Sterilization of infected root-canal dentine by topical application of a mixture of ciprofloxacin, metronidazole and minocycline in situ
-
Sato I, Ando-Kurihara N, Kota K, Iwaku M, Hoshino E, (1996) Sterilization of infected root-canal dentine by topical application of a mixture of ciprofloxacin, metronidazole and minocycline in situ. Int Endod J 29: 118-124.
-
(1996)
Int Endod J
, vol.29
, pp. 118-124
-
-
Sato, I.1
Ando-Kurihara, N.2
Kota, K.3
Iwaku, M.4
Hoshino, E.5
-
41
-
-
33645912595
-
Identification and quantification of archaea involved in primary endodontic infections
-
Vianna ME, Conrads G, Gomes BPFA, Horz HP, (2006) Identification and quantification of archaea involved in primary endodontic infections. J Clin Microbiol 44: 1274-1282.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 1274-1282
-
-
Vianna, M.E.1
Conrads, G.2
Gomes, B.P.F.A.3
Horz, H.P.4
-
42
-
-
79955435335
-
Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes
-
Al-Attar S, Westra ER, van der Oost J, Brouns SJ, (2011) Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes. Biol Chem 392: 277-289.
-
(2011)
Biol Chem
, vol.392
, pp. 277-289
-
-
Al-Attar, S.1
Westra, E.R.2
van der Oost, J.3
Brouns, S.J.4
-
43
-
-
84867576666
-
CRISPR-Cas, a prokaryotic adaptive immune system, in endodontic, oral, and multidrug-resistant hospital-acquired Enterococcus faecalis
-
Burley KM, Sedgley CM, (2012) CRISPR-Cas, a prokaryotic adaptive immune system, in endodontic, oral, and multidrug-resistant hospital-acquired Enterococcus faecalis. J Endod 38: 1511-1515.
-
(2012)
J Endod
, vol.38
, pp. 1511-1515
-
-
Burley, K.M.1
Sedgley, C.M.2
-
44
-
-
18244390487
-
Myeloperoxidase: friend and foe
-
Klebanoff SJ, (2005) Myeloperoxidase: friend and foe. J Leukoc Biol 77: 598-625.
-
(2005)
J Leukoc Biol
, vol.77
, pp. 598-625
-
-
Klebanoff, S.J.1
-
45
-
-
79151473786
-
Defensins in innate immunity
-
Hazlett L, Wu M, (2011) Defensins in innate immunity. Cell Tissue Res 343: 175-188.
-
(2011)
Cell Tissue Res
, vol.343
, pp. 175-188
-
-
Hazlett, L.1
Wu, M.2
-
46
-
-
84870600503
-
Exoproteomics: exploring the world around biological systems
-
Armengaud J, Christie-Oleza JA, Clair G, Malard V, Duport C, (2012) Exoproteomics: exploring the world around biological systems. Expert Rev Proteomics 9: 561-575.
-
(2012)
Expert Rev Proteomics
, vol.9
, pp. 561-575
-
-
Armengaud, J.1
Christie-Oleza, J.A.2
Clair, G.3
Malard, V.4
Duport, C.5
-
47
-
-
52849098071
-
Effects of sucrose on the extracellular matrix of plaque-like biofilm formed in vivo, studied by proteomic analysis
-
Paes Leme AF, Bellato CM, Bedi G, Cury AA, Koo H, et al. (2008) Effects of sucrose on the extracellular matrix of plaque-like biofilm formed in vivo, studied by proteomic analysis. Caries Res 42: 435-443.
-
(2008)
Caries Res
, vol.42
, pp. 435-443
-
-
Paes Leme, A.F.1
Bellato, C.M.2
Bedi, G.3
Cury, A.A.4
Koo, H.5
-
48
-
-
76149096479
-
A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry
-
Rudney JD, Xie H, Rhodus NL, Ondrey FG, Griffin TJ, (2010) A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry. Mol Oral Microbiol 25: 38-49.
-
(2010)
Mol Oral Microbiol
, vol.25
, pp. 38-49
-
-
Rudney, J.D.1
Xie, H.2
Rhodus, N.L.3
Ondrey, F.G.4
Griffin, T.J.5
-
49
-
-
34948874252
-
Proteomic parsimony through bipartite graph analysis improves accuracy and transparency
-
Zhang B, Chambers MC, Tabb DL, (2007) Proteomic parsimony through bipartite graph analysis improves accuracy and transparency. J Proteome Res 6: 3549-3557.
-
(2007)
J Proteome Res
, vol.6
, pp. 3549-3557
-
-
Zhang, B.1
Chambers, M.C.2
Tabb, D.L.3
-
50
-
-
70349912263
-
False discovery rates of protein identifications: a strike against the two-peptide rule
-
Gupta N, Pevzner PA, (2009) False discovery rates of protein identifications: a strike against the two-peptide rule. J Proteome Res 8: 4173-4181.
-
(2009)
J Proteome Res
, vol.8
, pp. 4173-4181
-
-
Gupta, N.1
Pevzner, P.A.2
-
51
-
-
77949695293
-
Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies
-
Searle BC, (2010) Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies. Proteomics 10: 1265-1269.
-
(2010)
Proteomics
, vol.10
, pp. 1265-1269
-
-
Searle, B.C.1
-
52
-
-
34548725468
-
Proteomics technologies and challenges
-
Cho WC, (2007) Proteomics technologies and challenges. Genomics Proteomics Bioinformatics 5: 77-85.
-
(2007)
Genomics Proteomics Bioinformatics
, vol.5
, pp. 77-85
-
-
Cho, W.C.1
-
53
-
-
84865783204
-
Protein inference: a review
-
Huang T, Wang J, Yu W, He Z, (2012) Protein inference: a review. Brief Bioinform 13: 586-614.
-
(2012)
Brief Bioinform
, vol.13
, pp. 586-614
-
-
Huang, T.1
Wang, J.2
Yu, W.3
He, Z.4
|