-
3
-
-
0035826155
-
Exploring complex networks
-
DOI 10.1038/35065725
-
Strogatz, S. H. Exploring complex networks. Nature 410, 268-276 (2001). (Pubitemid 32216604)
-
(2001)
Nature
, vol.410
, Issue.6825
, pp. 268-276
-
-
Strogatz, S.H.1
-
4
-
-
84885418136
-
Networks and complexity
-
AIMS
-
Helbing, D., Jost, J. & Kantz, H. (eds) in Networks and Complexity (Networks and Heterogeneous Media, Vol. 3, AIMS, 2008).
-
(2008)
Networks and Heterogeneous Media
, vol.3
-
-
Helbing, D.1
Jost, J.2
Kantz, H.3
-
7
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
DOI 10.1038/nature03607
-
Palla, G., Derényi, I., Farkas, I. & Vicsek, T. Uncovering the overlapping community structure of complex networks in nature and society. Nature 435, 814-818 (2005). (Pubitemid 40839731)
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 814-818
-
-
Palla, G.1
Derenyi, I.2
Farkas, I.3
Vicsek, T.4
-
9
-
-
0032482432
-
Collective dynamics of ̀small-world' networks
-
Watts, D. J. & Strogatz, S. H. Collective dynamics of ̀small-world' networks. Nature 393, 440-442 (1998).
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
10
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabási, A. L. & Albert, R. Emergence of scaling in random networks. Science 286, 509-512 (1999).
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabási, A.L.1
Albert, R.2
-
12
-
-
18744389789
-
Assortative mixing in networks
-
Newman, M. E. J. Assortative mixing in networks. Phys. Rev. Lett. 89, 208701 (2002).
-
(2002)
Phys. Rev. Lett.
, vol.89
, pp. 208701
-
-
Newman, M.E.J.1
-
13
-
-
25944437904
-
Dynamical and correlation properties of the Internet
-
Pastor-Satorras, R., Vázquez, A. & Vespignani, A. Dynamical and correlation properties of the Internet. Phys. Rev. Lett. 87, 258701 (2001).
-
(2001)
Phys. Rev. Lett.
, vol.87
, pp. 258701
-
-
Pastor-Satorras, R.1
Vázquez, A.2
Vespignani, A.3
-
14
-
-
56549085272
-
Critical phenomena in complex networks
-
Dorogovtsev, S. N. & Goltsev, A. V. Critical phenomena in complex networks. Rev. Mod. Phys. 80, 1275-1335 (2008).
-
(2008)
Rev. Mod. Phys.
, vol.80
, pp. 1275-1335
-
-
Dorogovtsev, S.N.1
Goltsev, A.V.2
-
16
-
-
0035852785
-
Dynamic modeling of gene expression data
-
DOI 10.1073/pnas.98.4.1693
-
Holter, N. S., Maritan, A., Cieplak, M., Fedoroff, N. V. & Banavar, J. R. Dynamic modeling of gene expression data. Proc. Natl Acad. Sci. USA 98, 1693-1698 (2001). (Pubitemid 32165560)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.4
, pp. 1693-1698
-
-
Holter, N.S.1
Maritan, A.2
Cieplak, M.3
Fedoroff, N.V.4
Banavar, J.R.5
-
17
-
-
0039592729
-
From Kuramoto to Crawford: Exploring the onset of synchronization in populations of coupled oscillators
-
Strogatz, S. H. From Kuramoto to Crawford: Exploring the onset of synchronization in populations of coupled oscillators. Physica D 143, 1-20 (2000).
-
(2000)
Physica D
, vol.143
, pp. 1-20
-
-
Strogatz, S.H.1
-
18
-
-
56549084695
-
Synchronization in complex networks
-
Arenas, A., Díaz-Guilera, A., Kurths, J., Moreno, Y. & Zhou, C. Synchronization in complex networks. Phys. Rep. 469, 93-153 (2008).
-
(2008)
Phys. Rep.
, vol.469
, pp. 93-153
-
-
Arenas, A.1
Díaz-Guilera, A.2
Kurths, J.3
Moreno, Y.4
Zhou, C.5
-
20
-
-
2942573513
-
Velocity and hierarchical spread of epidemic outbreaks in scale-free networks
-
Barthélémy, M., Barrat, A., Pastor-Satorras, R. & Vespignany, A. Velocity and hierarchical spread of epidemic outbreaks in scale-free networks. Phys. Rev. Lett. 92, 178701 (2004).
-
(2004)
Phys. Rev. Lett.
, vol.92
, pp. 178701
-
-
Barthélémy, M.1
Barrat, A.2
Pastor-Satorras, R.3
Vespignany, A.4
-
21
-
-
18044384806
-
Dynamical patterns of epidemic outbreaks in complex heterogeneous networks
-
DOI 10.1016/j.jtbi.2005.01.011
-
Barthélémy, M., Barrat, A., Pastor-Satorras, R. & Vespignany, A. Dynamical patterns of epidemic outbreaks in complex heterogeneous networks. J. Theor. Biol. 235, 275-288 (2005). (Pubitemid 40603479)
-
(2005)
Journal of Theoretical Biology
, vol.235
, Issue.2
, pp. 275-288
-
-
Barthelemy, M.1
Barrat, A.2
Pastor-Satorras, R.3
Vespignani, A.4
-
22
-
-
37649031646
-
Spectral analysis and the dynamic response of complex networks
-
De Aguiar, M. A. M. & Bar-Yam, Y. Spectral analysis and the dynamic response of complex networks. Phys. Rev. E 71, 016106 (2000).
-
(2000)
Phys. Rev. e
, vol.71
, pp. 016106
-
-
De Aguiar, M.A.M.1
Bar-Yam, Y.2
-
23
-
-
0035794256
-
Epidemic spreading in scale-free networks
-
DOI 10.1103/PhysRevLett.86.3200
-
Pastor-Satorras, R. & Vespignani, A. Epidemic spreading in scale-free networks. Phys. Rev. Lett. 86, 3200-3203 (2001). (Pubitemid 32317894)
-
(2001)
Physical Review Letters
, vol.86
, Issue.14
, pp. 3200-3203
-
-
Pastor-Satorras, R.1
Vespignani, A.2
-
24
-
-
6344221308
-
Forecast and control of epidemics in a globalized world
-
DOI 10.1073/pnas.0308344101
-
Hufnagel, L., Brockmann, D. & Geisel, T. Forecast and control of epidemics in a globalized world. Proc. Natl Acad. Sci. USA 101, 15124-15129 (2004). (Pubitemid 39391729)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.42
, pp. 15124-15129
-
-
Hufnagel, L.1
Brockmann, D.2
Geisel, T.3
-
25
-
-
9644289291
-
A generalized model of social and biological contagion
-
DOI 10.1016/j.jtbi.2004.09.006, PII S0022519304004515
-
Dodds, P. S. & Watts, D. J. A generalized model of social and biological contagion. J. Theor. Biol. 232, 587-604 (2005). (Pubitemid 39575100)
-
(2005)
Journal of Theoretical Biology
, vol.232
, Issue.4
, pp. 587-604
-
-
Dodds, P.S.1
Watts, D.J.2
-
28
-
-
34548161097
-
Spreading out of perturbations in reversible reaction networks
-
Maslov, S. & Ispolatov, I. Spreading out of perturbations in reversible reaction networks. New J. Phys. 9, 273-283 (2007).
-
(2007)
New J. Phys.
, vol.9
, pp. 273-283
-
-
Maslov, S.1
Ispolatov, I.2
-
29
-
-
58149464666
-
Fluctuations in mass-action equilibrium of protein binding networks
-
Yan K.-K. Waleer, D. & Maslov, S. Fluctuations in mass-action equilibrium of protein binding networks. Phys. Rev. Lett. 101, 268102 (2008).
-
(2008)
Phys. Rev. Lett.
, vol.101
, pp. 268102
-
-
Yan, K.-K.1
Walker, D.2
Maslov, S.3
-
31
-
-
33748795802
-
Biological applications of the theory of birth-and-death processes
-
DOI 10.1093/bib/bbk006, The Comparative and Functional Genomics (BITS) Workshop
-
Novozhilov, A. S., Karev, G. P. & Koonin, E. V. Biological applications of the theory of birth-and-death processes. Brief. Bioinform. 7, 70-85 (2006). (Pubitemid 44404325)
-
(2006)
Briefings in Bioinformatics
, vol.7
, Issue.1
, pp. 70-85
-
-
Novozhilov, A.S.1
Karev, G.P.2
Koonin, E.V.3
-
34
-
-
52649087274
-
Modelling and analysis of gene regulatory networks
-
Karlebach, G. & Shamir, R. Modelling and analysis of gene regulatory networks. Nature Rev. 9, 770-780 (2008).
-
(2008)
Nature Rev.
, vol.9
, pp. 770-780
-
-
Karlebach, G.1
Shamir, R.2
-
35
-
-
0036021408
-
General statistics of stochastic process of gene expression in eukaryotic cells
-
Kuznetsov, V. A., Knott, G. D. & Bonner, R. F. General statistics of stochastic process of gene expression in eukaryotic cells. Genetics 161, 1321-1332 (2002). (Pubitemid 34831454)
-
(2002)
Genetics
, vol.161
, Issue.3
, pp. 1321-1332
-
-
Kuznetsov, V.A.1
Knott, G.D.2
Bonner, R.F.3
-
36
-
-
0035999981
-
Making sense of microarray data distributions
-
Hoyle, D. C., Rattray, M., Jupp, R. & Brass, A. Making sense of microarray data distributions. Bioinformatics 18, 576-584 (2002). (Pubitemid 34521047)
-
(2002)
Bioinformatics
, vol.18
, Issue.4
, pp. 576-584
-
-
Hoyle, D.C.1
Rattray, M.2
Jupp, R.3
Brass, A.4
-
37
-
-
85040473565
-
A model of transcriptional regulatory networks based on biases in the observed regulation rules
-
Harris, E. E., Sawhill, B., Wuensche, A. & Kauffman, S. A model of transcriptional regulatory networks based on biases in the observed regulation rules. Complexity 7, 23-40 (2003).
-
(2003)
Complexity
, vol.7
, pp. 23-40
-
-
Harris, E.E.1
Sawhill, B.2
Wuensche, A.3
Kauffman, S.4
-
38
-
-
0037471175
-
Zipf's law in gene expression
-
Furusawa, C. & Kaneko, K. Zipf's law in gene expression. Phys. Rev. Lett. 90, 088102 (2003).
-
(2003)
Phys. Rev. Lett.
, vol.90
, pp. 088102
-
-
Furusawa, C.1
Kaneko, K.2
-
39
-
-
25444494142
-
Can Zipf's law be adapted to normalize microarrays
-
Lu, T. et al. Can Zipf's law be adapted to normalize microarrays BMC Bioinform. 6, 37-49 (2005).
-
(2005)
BMC Bioinform
, vol.6
, pp. 37-49
-
-
Lu, T.1
-
40
-
-
1542288938
-
Global organization of metabolic fluxes in the bacterium Escherichia coli
-
Alamaas, E., Kovács, B., Vicsek, T., Oltvai, Z. N. & Barabási, A. L. Global organization of metabolic fluxes in the bacterium Escherichia coli. Nature 427, 839-843 (2004).
-
(2004)
Nature
, vol.427
, pp. 839-843
-
-
Alamaas, E.1
Kovács, B.2
Vicsek, T.3
Oltvai, Z.N.4
Barabási, A.L.5
-
41
-
-
18144406182
-
Scale-free brain functional networks
-
Eguíluz, V. M., Chialvo, D. R., Cecchi, G. A., Baliki, M. & Apkarian, A. V. Scale-free brain functional networks. Phys. Rev. Lett. 94, 018102 (2005).
-
(2005)
Phys. Rev. Lett.
, vol.94
, pp. 018102
-
-
Eguíluz, V.M.1
Chialvo, D.R.2
Cecchi, G.A.3
Baliki, M.4
Apkarian, A.V.5
-
43
-
-
44449113476
-
-
Leskovec, J., Mcglohon, M., Faloutsos, C., Glance, N. & Hurst, M. Proc. SIAM Int. Conf. Data Mining 551-556 (2007).
-
(2007)
Proc. SIAM Int. Conf. Data Mining
, pp. 551-556
-
-
Leskovec, J.1
McGlohon, M.2
Faloutsos, C.3
Glance, N.4
Hurst, M.5
-
44
-
-
84885419513
-
-
ACM
-
Meeyoung, C., Mislove, A. & Gummadi, B. A. Proc. First Workshop on Online Social Networks, WOSN'08 13-18 (ACM, 2008).
-
(2008)
Proc. First Workshop on Online Social Networks, WOSN'08
, pp. 13-18
-
-
Meeyoung, C.1
Mislove, A.2
Gummadi, B.A.3
-
45
-
-
42749108762
-
Model for cascading failures in complex networks
-
Crucitti, P., Latora, V. & Marchiori, M. Model for cascading failures in complex networks. Phys. Rev. E 69, 045104 (2004).
-
(2004)
Phys. Rev. e
, vol.69
, pp. 045104
-
-
Crucitti, P.1
Latora, V.2
Marchiori, M.3
-
46
-
-
34547239425
-
Complex systems analysis of series of blackouts: Cascading failure, critical points, and self-organization
-
Dobson, I., Carreras, B. A., Lynch, V. E. & Newman, D. E. Complex systems analysis of series of blackouts: Cascading failure, critical points, and self-organization. Chaos 17, 026103 (2007).
-
(2007)
Chaos
, vol.17
, pp. 026103
-
-
Dobson, I.1
Carreras, B.A.2
Lynch, V.E.3
Newman, D.E.4
-
47
-
-
3343018400
-
The ensemble approach to understand genetic regulatory networks
-
Kauffman, S. The ensemble approach to understand genetic regulatory networks. Physica A 340, 733-740 (2004).
-
(2004)
Physica A
, vol.340
, pp. 733-740
-
-
Kauffman, S.1
-
48
-
-
5144224669
-
Entropy of dialogues creates coherent structures in e-mail traffic
-
DOI 10.1073/pnas.0405728101
-
Eckmann, J-P., Moses, E. & Sergi, D. Entropy of dialogues creates coherent structures in e-mail traffic. Proc. Natl Acad. Sci. USA 101, 14333-14337 (2004). (Pubitemid 39346749)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.40
, pp. 14333-14337
-
-
Eckmann, J.-P.1
Moses, E.2
Sergi, D.3
-
49
-
-
33747078457
-
Identifying transcription factor functions and targets by phenotypic activation
-
DOI 10.1073/pnas.0605140103
-
Chua, G. et al. Identifying transcription factor functions and targets by phenotypic activation. Proc. Natl Acad. Sci. USA 103, 12045-12050 (2006). (Pubitemid 44215808)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.32
, pp. 12045-12050
-
-
Chua, G.1
Morris, Q.D.2
Sopko, R.3
Robinson, M.D.4
Ryan, O.5
Chan, E.T.6
Frey, B.J.7
Andrews, B.J.8
Boone, C.9
Hughes, T.R.10
-
50
-
-
0000934061
-
Threshold models of collective behavior
-
Granovetter, M. Threshold models of collective behavior. Am. J. Soc. 83, 1420-1443 (2002).
-
(2002)
Am. J. Soc.
, vol.83
, pp. 1420-1443
-
-
Granovetter, M.1
-
51
-
-
46249112705
-
Boolean network models of cellular regulation: Prospects and limitations
-
DOI 10.1098/rsif.2008.0132.focus, PII 9K3H4W04MKV8382X
-
Bornholdt, S. Boolean network models of cellular regulation: Prospects and limitations. J. R. Soc. Interf. 5, S85-S94 (2008). (Pubitemid 351915287)
-
(2008)
Journal of the Royal Society Interface
, vol.5
, Issue.SUPPL. 1
-
-
Bornholdt, S.1
-
52
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu, H. et al. High-quality binary protein interaction map of the yeast interactome network. Science 322, 104-110 (2008).
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
-
53
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
DOI 10.1126/science.298.5594.824
-
Milo, R. et al. Network motifs: Simple building blocks of complex networks. Science 298, 824-827 (2002). (Pubitemid 35231534)
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
Alon, U.6
-
54
-
-
78449269076
-
Power law distributions in information science: Making the case for logarithmic binning
-
Milojevi¢, S. Power law distributions in information science: Making the case for logarithmic binning. J. Am. Soc. Inf. Sci. Technol. 61, 2417-2425 (2010).
-
(2010)
J. Am. Soc. Inf. Sci. Technol.
, vol.61
, pp. 2417-2425
-
-
Milojevi, S.1
|