-
1
-
-
0029693922
-
Short-chain fatty acids in the human colon: relation to gastrointestinal health and disease
-
Mortensen P, Clausen M. Short-chain fatty acids in the human colon: relation to gastrointestinal health and disease. Scand J Gastroenterol Suppl 1996, 216:132-143.
-
(1996)
Scand J Gastroenterol Suppl
, vol.216
, pp. 132-143
-
-
Mortensen, P.1
Clausen, M.2
-
2
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
10.1038/nature09944, 21508958
-
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin J, Sicheritz-Ponten T, Tims S. Enterotypes of the human gut microbiome. Nature 2011, 473:174-180. 10.1038/nature09944, 21508958.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.M.10
Bertalan, M.11
Borruel, N.12
Casellas, F.13
Fernandez, L.14
Gautier, L.15
Hansen, T.16
Hattori, M.17
Hayashi, T.18
Kleerebezem, M.19
Kurokawa, K.20
Leclerc, M.21
Levenez, F.22
Manichanh, C.23
Nielsen, H.B.24
Nielsen, T.25
Pons, N.26
Poulain, J.27
Qin, J.28
Sicheritz-Ponten, T.29
Tims, S.30
more..
-
3
-
-
37149022209
-
Review article: the role of butyrate on colonic function
-
Hamer HM, Jonkers D, Venema K, Vanhoutvin S, Troost FJ, Brummer RJ. Review article: the role of butyrate on colonic function. Aliment Pharmacol Ther 2008, 27:104-119.
-
(2008)
Aliment Pharmacol Ther
, vol.27
, pp. 104-119
-
-
Hamer, H.M.1
Jonkers, D.2
Venema, K.3
Vanhoutvin, S.4
Troost, F.J.5
Brummer, R.J.6
-
4
-
-
77649119543
-
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene
-
10.1111/j.1462-2920.2009.02066.x, 19807780
-
Louis P, Young P, Holtrop G, Flint HJ. Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environ Microbiol 2010, 12:304-314. 10.1111/j.1462-2920.2009.02066.x, 19807780.
-
(2010)
Environ Microbiol
, vol.12
, pp. 304-314
-
-
Louis, P.1
Young, P.2
Holtrop, G.3
Flint, H.J.4
-
5
-
-
63849241608
-
Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine
-
10.1111/j.1574-6968.2009.01514.x, 19222573
-
Louis P, Flint HJ. Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine. FEMS Microbiol Lett 2009, 294:1-8. 10.1111/j.1574-6968.2009.01514.x, 19222573.
-
(2009)
FEMS Microbiol Lett
, vol.294
, pp. 1-8
-
-
Louis, P.1
Flint, H.J.2
-
6
-
-
0037126667
-
The microbiology of butyrate formation in the human colon
-
10.1111/j.1574-6968.2002.tb11467.x, 12480096
-
Pryde SE, Duncan SH, Hold GL, Stewart CS, Flint HJ. The microbiology of butyrate formation in the human colon. FEMS Microbiol Lett 2002, 217:133-139. 10.1111/j.1574-6968.2002.tb11467.x, 12480096.
-
(2002)
FEMS Microbiol Lett
, vol.217
, pp. 133-139
-
-
Pryde, S.E.1
Duncan, S.H.2
Hold, G.L.3
Stewart, C.S.4
Flint, H.J.5
-
7
-
-
57649184474
-
Genome-scale analyses of health-promoting bacteria: probiogenomics
-
10.1038/nrmicro2047, 19029955
-
Ventura M, O'Flaherty S, Claesson MJ, Turroni F, Klaenhammer TR, van Sinderen D, O'Toole PW. Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol 2009, 7:61-71. 10.1038/nrmicro2047, 19029955.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 61-71
-
-
Ventura, M.1
O'Flaherty, S.2
Claesson, M.J.3
Turroni, F.4
Klaenhammer, T.R.5
van Sinderen, D.6
O'Toole, P.W.7
-
8
-
-
0031687820
-
Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
-
106545, 9758798
-
Braker G, Fesefeldt A. Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl Environ Microbiol 1998, 64:3769-3775. 106545, 9758798.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3769-3775
-
-
Braker, G.1
Fesefeldt, A.2
-
9
-
-
76349086053
-
Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment
-
2808446, 19776767
-
Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME J 2009, 4:279-285. 2808446, 19776767.
-
(2009)
ISME J
, vol.4
, pp. 279-285
-
-
Iwai, S.1
Chai, B.2
Sul, W.J.3
Cole, J.R.4
Hashsham, S.A.5
Tiedje, J.M.6
-
10
-
-
84857135712
-
In-feed antibiotic effects on the swine intestinal microbiome
-
10.1073/pnas.1120238109, 3277147, 22307632
-
Looft T, Johnson T, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham S, Tiedje JM, Stanton TB. In-feed antibiotic effects on the swine intestinal microbiome. Proc Natl Acad Sci U S A 2012, 109:1691-1696. 10.1073/pnas.1120238109, 3277147, 22307632.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 1691-1696
-
-
Looft, T.1
Johnson, T.2
Allen, H.K.3
Bayles, D.O.4
Alt, D.P.5
Stedtfeld, R.D.6
Sul, W.J.7
Stedtfeld, T.M.8
Chai, B.9
Cole, J.R.10
Hashsham, S.11
Tiedje, J.M.12
Stanton, T.B.13
-
11
-
-
1642277665
-
Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon
-
10.1128/JB.186.7.2099-2106.2004, 374397, 15028695
-
Louis P, Duncan SH, McCrae SI, Millar J, Jackson MS, Flint HJ. Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon. J Bacteriol 2004, 186:2099-2106. 10.1128/JB.186.7.2099-2106.2004, 374397, 15028695.
-
(2004)
J Bacteriol
, vol.186
, pp. 2099-2106
-
-
Louis, P.1
Duncan, S.H.2
McCrae, S.I.3
Millar, J.4
Jackson, M.S.5
Flint, H.J.6
-
12
-
-
33947413117
-
Development of a semiquantitative degenerate real-time PCR-based assay for estimation of numbers of butyryl-coenzyme A (CoA) CoA transferase genes in complex bacterial samples
-
10.1128/AEM.02561-06, 1828812, 17259367
-
Louis P, Flint HJ. Development of a semiquantitative degenerate real-time PCR-based assay for estimation of numbers of butyryl-coenzyme A (CoA) CoA transferase genes in complex bacterial samples. Appl Environ Microbiol 2007, 73:2009-2012. 10.1128/AEM.02561-06, 1828812, 17259367.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2009-2012
-
-
Louis, P.1
Flint, H.J.2
-
14
-
-
84874094878
-
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis
-
Young VB, Raffals LH, Huse S, Schloss PD, Vital M, Dai D, Bruic JM, Antonopoulos DA, Arrieta R, Kwon J, Reddy G, Hubert N, Dalal S, Morrison H, Eren MA, Schmidt TM, Tiedje JM, Sogin M, Chang E. Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis. BMC Microbiome
-
BMC Microbiome
-
-
Young, V.B.1
Raffals, L.H.2
Huse, S.3
Schloss, P.D.4
Vital, M.5
Dai, D.6
Bruic, J.M.7
Antonopoulos, D.A.8
Arrieta, R.9
Kwon, J.10
Reddy, G.11
Hubert, N.12
Dalal, S.13
Morrison, H.14
Eren, M.A.15
Schmidt, T.M.16
Tiedje, J.M.17
Sogin, M.18
Chang, E.19
-
15
-
-
0027102870
-
Postoperative and long-term results of ileal pouch-anal anastomosis for ulcerative colitis and familial polyposis coli
-
10.1007/BF01308083, 1335407
-
Salemans JM, Nagengast FM, Lubbers EJ, Kuijpers JH. Postoperative and long-term results of ileal pouch-anal anastomosis for ulcerative colitis and familial polyposis coli. Dig Dis Sci 1992, 37:1882-1889. 10.1007/BF01308083, 1335407.
-
(1992)
Dig Dis Sci
, vol.37
, pp. 1882-1889
-
-
Salemans, J.M.1
Nagengast, F.M.2
Lubbers, E.J.3
Kuijpers, J.H.4
-
16
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
10.1073/pnas.0706625104, 1959459, 17699621
-
Frank DN, St Amand AL, Feldman R, Boedeker EC, Harpaz N, Pace NR. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A 2007, 104:13780-13785. 10.1073/pnas.0706625104, 1959459, 17699621.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
St Amand, A.L.2
Feldman, R.3
Boedeker, E.C.4
Harpaz, N.5
Pace, N.R.6
-
17
-
-
44649118583
-
Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases
-
10.1016/j.chom.2008.05.001, 2872787, 18541218
-
Peterson D, Frank DN, Pace NR, Gordon JI. Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases. Cell Host Microbe 2008, 3:417-427. 10.1016/j.chom.2008.05.001, 2872787, 18541218.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 417-427
-
-
Peterson, D.1
Frank, D.N.2
Pace, N.R.3
Gordon, J.I.4
-
18
-
-
63849164050
-
Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii
-
Ramirez-Farias C, Slezak K, Fuller Z, Duncan A, Holtrop G, Louis P. Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. Br J Nutr 2009, 101:541-550.
-
(2009)
Br J Nutr
, vol.101
, pp. 541-550
-
-
Ramirez-Farias, C.1
Slezak, K.2
Fuller, Z.3
Duncan, A.4
Holtrop, G.5
Louis, P.6
-
19
-
-
34249939326
-
Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs)
-
10.1038/ismej.2007.26, 18043623
-
Leigh MB, Pellizari VH, Uhlík O, Sutka R, Rodrigues J, Ostrom NE, Zhou J, Tiedje JM. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J 2007, 1:134-148. 10.1038/ismej.2007.26, 18043623.
-
(2007)
ISME J
, vol.1
, pp. 134-148
-
-
Leigh, M.B.1
Pellizari, V.H.2
Uhlík, O.3
Sutka, R.4
Rodrigues, J.5
Ostrom, N.E.6
Zhou, J.7
Tiedje, J.M.8
-
20
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
10.1093/nar/gkn879, 2686447, 19004872
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009, 37:D141-D145. 10.1093/nar/gkn879, 2686447, 19004872.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
21
-
-
84871106113
-
-
The R-project http://www.R-project.org.
-
The R-project
-
-
-
22
-
-
84938484922
-
-
rrnDB http://rrndb.mmg.msu.edu.
-
rrnDB
-
-
-
24
-
-
77958610660
-
Pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
-
10.1186/1471-2105-11-538, 3098090, 21034504
-
Matsen F, Kodner RB, Armbrust EV. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics 2010, 11:538. 10.1186/1471-2105-11-538, 3098090, 21034504.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 538
-
-
Matsen, F.1
Kodner, R.B.2
Armbrust, E.V.3
-
25
-
-
0037478707
-
Oligonucleotide probes that detect quantitatively significant groups of butyrate-producing bacteria in human feces
-
10.1128/AEM.69.7.4320-4324.2003, 165216, 12839823
-
Hold GL, Schwiertz A, Aminov RI, Blaut M, Flint HJ. Oligonucleotide probes that detect quantitatively significant groups of butyrate-producing bacteria in human feces. Appl Environ Microbiol 2003, 69:4320. 10.1128/AEM.69.7.4320-4324.2003, 165216, 12839823.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4320
-
-
Hold, G.L.1
Schwiertz, A.2
Aminov, R.I.3
Blaut, M.4
Flint, H.J.5
-
26
-
-
2942733453
-
Subdoligranulum variabile gen. nov., sp. nov. from human feces
-
10.1016/j.anaerobe.2004.01.004, 16701519
-
Holmstrøm K, Collins MD, Møller T, Falsen E, Lawson PA. Subdoligranulum variabile gen. nov., sp. nov. from human feces. Anaerobe 2004, 10:197-203. 10.1016/j.anaerobe.2004.01.004, 16701519.
-
(2004)
Anaerobe
, vol.10
, pp. 197-203
-
-
Holmstrøm, K.1
Collins, M.D.2
Møller, T.3
Falsen, E.4
Lawson, P.A.5
-
27
-
-
76049120713
-
Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease
-
10.1099/jmm.0.017541-0, 19942690
-
Van Immerseel F, Ducatelle R, de Vos M, Boon N, van De Wiele T, Verbeke K, Rutgeerts P, Sas B, Louis P, Flint HJ. Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease. J Med Microbiol 2010, 59:141-143. 10.1099/jmm.0.017541-0, 19942690.
-
(2010)
J Med Microbiol
, vol.59
, pp. 141-143
-
-
Van Immerseel, F.1
Ducatelle, R.2
de Vos, M.3
Boon, N.4
van De Wiele, T.5
Verbeke, K.6
Rutgeerts, P.7
Sas, B.8
Louis, P.9
Flint, H.J.10
-
28
-
-
0031024745
-
Metabolic adaptation of terminal ileal mucosa after construction of an ileoanal pouch
-
10.1002/bjs.1800840127, 9043459
-
Chapman M, Hutton M, Grahn MF, Williams NS. Metabolic adaptation of terminal ileal mucosa after construction of an ileoanal pouch. Br J Surg 1997, 84:71-73. 10.1002/bjs.1800840127, 9043459.
-
(1997)
Br J Surg
, vol.84
, pp. 71-73
-
-
Chapman, M.1
Hutton, M.2
Grahn, M.F.3
Williams, N.S.4
-
29
-
-
0037509909
-
Regulation of short-chain fatty acid production
-
10.1079/PNS2002207, 12740060
-
Macfarlane S, Macfarlane GT. Regulation of short-chain fatty acid production. Proc Nutr Soc 2003, 62:67-72. 10.1079/PNS2002207, 12740060.
-
(2003)
Proc Nutr Soc
, vol.62
, pp. 67-72
-
-
Macfarlane, S.1
Macfarlane, G.T.2
-
30
-
-
49749126765
-
Dietary fibre and the gut microbiota
-
Scott K, Duncan S, Flint HJ. Dietary fibre and the gut microbiota. Nutr Bull 2008, 33:201-211.
-
(2008)
Nutr Bull
, vol.33
, pp. 201-211
-
-
Scott, K.1
Duncan, S.2
Flint, H.J.3
-
31
-
-
0020397166
-
Butyrate: a cytotoxin for Vero cells produced by Bacteroides gingivalis and Bacteroides asaccharolyticus
-
10.1007/BF00418285, 7149698
-
Touw JJ, van Steenbergen TJ, De Graaff J. Butyrate: a cytotoxin for Vero cells produced by Bacteroides gingivalis and Bacteroides asaccharolyticus. Antonie Van Leeuwenhoek 1982, 48:315-325. 10.1007/BF00418285, 7149698.
-
(1982)
Antonie Van Leeuwenhoek
, vol.48
, pp. 315-325
-
-
Touw, J.J.1
van Steenbergen, T.J.2
De Graaff, J.3
-
32
-
-
0021792135
-
Cytotoxic effects of culture supernatants of oral bacteria and various organic acids on Vero cells
-
10.1139/m85-057, 4005713
-
Grenier D, Mayrand D. Cytotoxic effects of culture supernatants of oral bacteria and various organic acids on Vero cells. Can J Microbiol 1985, 31:302-304. 10.1139/m85-057, 4005713.
-
(1985)
Can J Microbiol
, vol.31
, pp. 302-304
-
-
Grenier, D.1
Mayrand, D.2
-
33
-
-
84863989287
-
The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases
-
10.1038/ismej.2011.71, 3246229, 21716312
-
Khan MT, Duncan SH, Stams AJM, van Dijl JM, Flint HJ, Harmsen HJM. The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases. ISME J 2012, 6:1-8. 10.1038/ismej.2011.71, 3246229, 21716312.
-
(2012)
ISME J
, vol.6
, pp. 1-8
-
-
Khan, M.T.1
Duncan, S.H.2
Stams, A.J.M.3
van Dijl, J.M.4
Flint, H.J.5
Harmsen, H.J.M.6
-
34
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
10.1093/sysbio/syq010, 20525638
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59:307-321. 10.1093/sysbio/syq010, 20525638.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
|