Genetic diversity in a worldwide collection of sainfoin using morphological, anatomical, and molecular markers

Crop Science

Volumn 53, Issue 6, 2013, Pages 2483-2496

  Zarrabian, Mohammad ^a   Majidi, Mohammad Mahdi ^a   Ehtemam, Mohammad Hossein ^a  

^a ISFAHAN UNIVERSITY OF TECHNOLOGY   (Iran)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84885225578     PISSN: 0011183X     EISSN: 14350653     Source Type: Journal    
DOI: 10.2135/cropsci2013.03.0130     Document Type: Article

References (57)

1. Awasthi, A.K., G.M. Nagaraja, G.V. Naik, S. Kanginakudru, K. Thangavelu, and J. Nagaraju. 2004. Genetic diversity and relationships in mulberry (genus Morus) as revealed by RAPD and ISSR marker assays. BMC Genet. 5:1-9. doi:10.1186/1471-2156-5-1
2. Carbonero, C.H. 2011. Sainfoin (Onobrychis viciifolia), a forage legume with great potential for sustainable agriculture, an insight on its morphological, agronomical, cytological and genetic characterization. Dissertation, Univ. of Manchester, Manchester, U.K.
3. Chen, K.M., F. Wang, Y.H. Wang, T. Chen, Y.X. Hu, and J.X. Lin. 2006. Anatomical and chemical characteristics of foliar vascular bundles in four reed ecotypes adapted to different habitats. Flora 201:555-569. doi:10.1016/j.flora.2005.12.003
4. Delgado, J., S.I. Buil, and C. Andres. 2008. The agronomic variability of a collection of sainfoin accessions. Span. J. Agric. Res. 6:401-407.
5. Demdoum, S., F. Munoz, I. Delgado, J. Valderrabano, and A. Wunsch. 2012. EST-SSR cross-amplification and genetic similarity in Onobrychis genus. Genet. Resour. Crop Evol. 59:253-260. doi:10.1007/s10722-011-9681-x
6. Dias, P.M.B., B. Julier, J.P. Sampoux, P. Barre, and M. Dall'Agnol. 2008. Genetic diversity in red clover (Trifolium pratense L.) revealed by morphological and microsatellite (SSR) markers. Euphytica 160:189-205. doi:10.1007/s10681-007-9534-z
7. Drobna, J. 2010. Morphological variation in natural populations of Lotus corniculatus in association to geographical parameters of collecting sites. Biologia 65:213-218. doi:10.2478/s11756-010-0011-0
8. Edward, G. 1956. A practical manual of medical and biological staining techniques. Inter-science Publishers, New York.
9. Emre, I., D. Turgut-bahk, A. Sahin, and M. Kursat. 2007. Total electrophoretic band patterns of some Onobrychis species growing in Turkey. Am.-Eurasian J. Agric. Environ. Sci. 2:123-126.
10. Equiza, M.A., and J.A. Tognetti. 2002. Morphological plasticity of spring and winter wheat in response to changing temperatures. Funct. Plant Biol. 29:1427-1436. doi:10.1071/FP02066
11. Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol. Bioinform. Online 1:47-50.
12. Feng, F., M. Chen, D. Zhang, X. Sui, and S. Han. 2009. Application of SRAP in the genetic diversity of Pinus koraiensis of different provenances. Afr. J. Biotechnol. 8:1000-1008.
13. Fu, X.P., G.G. Ning, L.P. Gao, and M.Z. Bao. 2008. Genetic diversity of Dianthus accessions as assessed using two molecular marker systems (SRAPs and ISSRs) and morphological traits. Sci. Hortic. (Amsterdam) 117:263-270. doi:10.1016/j. scienta.2008.04.001
14. Fufa, H., P.S. Baenziger, B.S. Beecher, I. Dweikat, R.A. Graybosch, and K.M. Eskridge. 2005. Comparison of phenotypic and molecular marker-based classifications of hard red winter wheat cultivars. Euphytica 145:133-146. doi:10.1007/s10681-005-0626-3
15. Greene, S.L., M. Gritsenko, and G. Vandemark. 2004. Relating morphologic and RAPD marker variation to collection site environment in wild populations of red clover (Trifolium pratense L.). Genet. Resour. Crop Evol. 51:643-653. doi:10.1023/B:GRES.0000024655.48989.ab
16. Hofreiter, A., and H.J. Tillich. 2002. Root anatomy of the Commelinaceae (Monocotyledoneae). Feddes Repert. 113:231-255. doi:10.1002/1522-239X(200208)113:3/4<231::AIDFEDR231>3.0.CO;2-2
17. Johns, M.A., P.W. Skroch, J. Nienhuis, P. Hinrichsv, G. Bascur, and C. Munoz-Schick. 1997. Gene pool classification of common bean landraces from Chile based on RAPD and morphological data. Crop Sci. 37:605-613. doi:10.2135/cropsci1997.0011183X003700020049x
18. Karamian, R., A. Moradi Behjou, and M. Ranjbar. 2012. Anatomical findings of Onobrychis sect. Heliobrychis (Fabaceae) in Iran and their taxonomic implications. Turk. J. Bot. 36:27-37.
19. Kocsis, M., J. Darok, and A. Borhidi. 2004. Comparative leaf anatomy and morphology of some neotropical Rondeletia (Rubiaceae) species. Plant Sys. Evol. 248:205-218.
20. Li, M.M., Y.L. Cai, Z.Q. Qian, and G.F. Zhao. 2009. Genetic diversity and differentiation in Chinese sour cherry Prunus pseudocerasus Lindl., and its implications for conservation. Genet. Resour. Crop Evol. 56:455-464. doi:10.1007/s10722-008-9378-y
21. Li, S., J. Li, X.L. Yang, Z. Cheng, and W.J. Zhan. 2010. Genetic diversity and differentiation of cultivated ginseng (Panax ginseng CA Meyer) populations in North-east China revealed by inter-simple sequence repeat (ISSR) Markers. Genet. Resour. Crop Evol. 58: 815-824.
22. Linhart, Y.B., and M.C. Grant.1996. Evolutionary significance of local genetic differentiation in plants. Annu. Rev. Ecol. Syst. 27:237-277.
23. Majidi, M.M., A. Mirlohi, and F. Amini. 2009. Genetic variation, heritability and correlations of agro-morphological traits in tall fescue (Festuca arundinacea Schreb.). Euphytica 167:323-331. doi:10.1007/s10681-009-9887-6
24. Mantel, N.A. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27:209-220.
25. Minchin, P.E., and A. Lacointe. 2005. New understanding of phloem physiology and possible consequences for modeling long distance carbon transport. New Phytol. 166:771-779. doi:10.1111/j.1469-8137.2005.01323.x
26. Murray, M.G., and W.F. Thompson. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325. doi:10.1093/nar/8.19.4321
27. Nagaoka, T., and Y. Ogihara. 1997. Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor. Appl. Genet. 94:597-602. doi:10.1007/s001220050456
28. Negri, V., and C.A. Cenci. 1988. Morphological characterization of natural populations of Onobrychis viciifolia (Leguminosae) from Central Italy. Willdenowia 17:19-31.
29. Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590.
30. 15O. Plant Cell Physiol. 49:718-729. doi:10.1093/pcp/pcn047
31. Paplauskiene, V., and G. Dabkeviciene. 2008. Genetic variability determination using ISSR-PCR markers in red clover varieties. Biologija (Vilnius) 54:56-59. doi:10.2478/v10054-008-0011-y
32. Pfeifer, M., and G. Jetschke. 2006. Influence of geographical isolation on genetic diversity of Himantoglossum hircinum (Orchidaceae). Folia Geobot. 41:3-20. doi:10.1007/BF02805258
33. Powell, W., M. Morgante, C. Ander, M. Hanafey, J. Vogel, S. Tingy, and A. Rafalaski. 1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) marker for germplasm analysis. Mol. Breed. 2:225-238. doi:10.1007/BF00564200
34. Pradeep Reddy, M., N. Sarla, and E.A. Siddiq. 2002. Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica 128:9-17. doi:10.1023/A:1020691618797
35. Prevost, A., and M.J. Wilkinson. 1999. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98:107-112. doi:10.1007/s001220051046
36. Prevost, D., L.M. Bordeleau, and H. Antoun. 1987. Symbiotic effectiveness of indigenous arctic rhizobia on a temperate forage legume: Sainfoin (Onobrychis viciifolia). Plant Soil 104:63-69. doi:10.1007/BF02370626
37. Ranjbar, M., R. Karamian, and F. Hajmoradi. 2010. Chromosome number and meiotic behavior of two populations of Onobrychis chorassanica Bunge (O. sect. Hymenobrychis) in Iran. J. Cell Mol. Res. 2:49-55.
38. Rechinger, K.H. 1969. Flora Iranica. In: K.H. Reshinger, editor. Vol. 157. Akademische Druck- und Verlgsantalt, Graz, Austria. p. 387.
39. Rohlf, F.J. 1998. NTSYS-pc numerical taxonomy and multivariate analysis system. Version 2.00. Exeter Software, Setauket, NY.
40. Roldan-Ruiz, I., J. Dendauw, E.V. Bockstaele, A. Depicker, and M.D. Loose. 2000. AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.). Mol. Breed. 6:125-134. doi:10.1023/A:1009680614564
41. SAS Institute. 1999. SAS/STAT users guide. SAS Inst., Cary, NC.
42. Sevanto, S., T. Holtta, and N.M. Holbrook. 2011. Effects of the hydraulic coupling between xylem and phloem on diurnal phloem diameter variation. Plant Cell Environ. 34:690-703. doi:10.1111/j.1365-3040.2011.02275.x
43. Sheaffer, C.C., N.P. Martin, J.F.S. Lamb, G.R. Cuomo, J.G. Jewett, and S.R. Quering. 2000. Leaf and stem properties of alfalfa entries. Agron. J. 92:733-739. doi:10.2134/agronj2000.924733x
44. Steiner, J.J., and G.G. Los Santos. 2001. Adaptive ecology of Lotus corniculatus L. genotypes: I. Plant morphology and RAPD maker characterizations. Crop Sci. 41:552-563. doi:10.2135/cropsci2001.412552x
45. Su, Y.J., T. Wang, and P. Ouyang. 2009. High genetic differentiation and variation as revealed by ISSR marker in Pseudotaxus chienii (Taxaceae), an old rare conifer endemic to China. Biochem. Syst. Ecol. 37:579-588. doi:10.1016/j.bse.2009.10.005
46. Taylor, N.L., and R.R. Smith. 1995. Red clover. In: R.F. Barnes et al., editors, Forages. Iowa State Univ., Ames. p. 217-226.
47. Tucak, M., S. Popovic, T. Cupic, S. Grljusic, S. Bolaric, and V. Kozumplik. 2008. Genetic diversity of alfalfa (Medicago spp.) estimated by molecular markers and morphological characters. Period. Biol. 3:243-249.
48. Wang, X., D. Wang, D. Li, and D. Duan. 2006. Genetic analysis of the gametophytes of Undaria pinnatifida (Phaeophyceae) with ISSR method. Aquaculture 258:250-256. doi:10.1016/j.aquaculture.2006.04.029
49. Wright, S. 1931. Evolution in Mendelian populations. Genetics 16:97-159.
50. Wright, S. 1943. Isolation by distance. Genetics 28:114-138.
51. Yeh, F.C., R. Yang, and T. Boyle. 1999. Popgene version 1.32: Microsoft Windows-based freeware for population genetic analysis. University of Alberta, Edmonton.
52. Yildiz, B., B. Ciplak, and E. Aktoklu. 1999. Fruit morphology of sections of the genus Onobrychis Miller (Fabaceae) and its phylogenetic implications. Isr. J. Plant Sci. 47:269-282. doi:10.1080/07929978.1999.10676784
53. Zeid, M., C.C. Schon, and W. Link. 2003. Genetic diversity in recent elite faba bean lines using AFLP markers. Theor. Appl. Genet. 107:1304-1314. doi:10.1007/s00122-003-1350-9
54. Zietkiewicz, E., A. Rafalski, and D. Labuda. 1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183. doi:10.1006/geno.1994.1151
55. Zohary, M. 1987. Flora Palaestina: Platanaceae to Umbelliferae. Part 2 (text). Israel Acad. of Sci. and Humanities, Jerusalem. p. 106-111.
56. Zong, M., H. Liu, Y.X. Qiu, S.Z. Yang, M.S. Zhao, and C.X. Fu. 2008. Genetic diversity and geographic differentiation in the threatened species Dysosma pleiantha in China as revealed by ISSR analysis. Biochem. Genet. 46:180-196. doi:10.1007/s10528-007-9141-7
57. Zwieniecki, M.A., C.M. Orians, P.J. Melcher, and N.M. Holbrook. 2003. Ionic control of the lateral exchange of water between vascular bundles in tomato. J. Exp. Bot. 54:1399-1405. doi:10.1093/jxb/erg144