-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R.I., Ludwig W., Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 1995, 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
2
-
-
0020593886
-
Simple and rapid method for isolating large plasmid DNA from lactic streptococci
-
Anderson D.G., McKay L.L. Simple and rapid method for isolating large plasmid DNA from lactic streptococci. Appl. Environ. Microbiol. 1983, 46:549-552.
-
(1983)
Appl. Environ. Microbiol.
, vol.46
, pp. 549-552
-
-
Anderson, D.G.1
McKay, L.L.2
-
3
-
-
0011278316
-
Characterization and purification of a phage phi 29-encoded DNA polymerase required for the initiation of replication
-
Blanco L., Salas M. Characterization and purification of a phage phi 29-encoded DNA polymerase required for the initiation of replication. Proc. Natl. Acad. Sci. U. S. A. 1984, 81:5325-5329.
-
(1984)
Proc. Natl. Acad. Sci. U. S. A.
, vol.81
, pp. 5325-5329
-
-
Blanco, L.1
Salas, M.2
-
4
-
-
84859474080
-
Insights into the bovine rumen plasmidome
-
Brown Kav A., Sasson G., Jami E., Doron-Faigenboim A., Benhar I., Mizrahi I. Insights into the bovine rumen plasmidome. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:5452-5457.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 5452-5457
-
-
Brown Kav, A.1
Sasson, G.2
Jami, E.3
Doron-Faigenboim, A.4
Benhar, I.5
Mizrahi, I.6
-
5
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
Brulc J.M., Antonopoulos D.A., Miller M.E., Wilson M.K., Yannarell A.C., Dinsdale E.A., Edwards R.E., Frank E.D., Emerson J.B., Wacklin P., Coutinho P.M., Henrissat B., Nelson K.E., White B.A. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:1948-1953.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 1948-1953
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Miller, M.E.3
Wilson, M.K.4
Yannarell, A.C.5
Dinsdale, E.A.6
Edwards, R.E.7
Frank, E.D.8
Emerson, J.B.9
Wacklin, P.10
Coutinho, P.M.11
Henrissat, B.12
Nelson, K.E.13
White, B.A.14
-
6
-
-
0034858372
-
Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities
-
Cook M.A., Osborn A.M., Bettandorff J., Sobecky P.A. Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology 2001, 147:2089-2101.
-
(2001)
Microbiology
, vol.147
, pp. 2089-2101
-
-
Cook, M.A.1
Osborn, A.M.2
Bettandorff, J.3
Sobecky, P.A.4
-
7
-
-
14644416567
-
Plasmid replicons of Rhizobium
-
Crossman L.C. Plasmid replicons of Rhizobium. Biochem. Soc. Trans. 2005, 33:157-158.
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 157-158
-
-
Crossman, L.C.1
-
8
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale E.A., Edwards R.A., Hall D., Angly F., Breitbart M., Brulc J.M., Furlan M., Desnues C., Haynes M., Li L., McDaniel L., Moran M.A., Nelson K.E., Nilsson C., Olson R., Paul J., Brito B.R., Ruan Y., Swan B.K., Stevens R., Valentine D.L., Thurber R.V., Wegley L., White B.A., Rohwer F. Functional metagenomic profiling of nine biomes. Nature 2008, 452:629-632.
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
Brulc, J.M.6
Furlan, M.7
Desnues, C.8
Haynes, M.9
Li, L.10
McDaniel, L.11
Moran, M.A.12
Nelson, K.E.13
Nilsson, C.14
Olson, R.15
Paul, J.16
Brito, B.R.17
Ruan, Y.18
Swan, B.K.19
Stevens, R.20
Valentine, D.L.21
Thurber, R.V.22
Wegley, L.23
White, B.A.24
Rohwer, F.25
more..
-
9
-
-
0033590591
-
A vector for promoter trapping in Bacillus cereus
-
Dunn A.K., Handelsman J. A vector for promoter trapping in Bacillus cereus. Gene 1999, 226:297-305.
-
(1999)
Gene
, vol.226
, pp. 297-305
-
-
Dunn, A.K.1
Handelsman, J.2
-
10
-
-
23944506044
-
Mobile genetic elements: the agents of open source evolution
-
Frost L.S., Leplae R., Summers A.O., Toussaint A. Mobile genetic elements: the agents of open source evolution. Nat. Rev. Microbiol. 2005, 3:722-732.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 722-732
-
-
Frost, L.S.1
Leplae, R.2
Summers, A.O.3
Toussaint, A.4
-
11
-
-
52449114817
-
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
-
Gilbert J.A., Field D., Huang Y., Edwards R., Li W., Gilna P., Joint I. Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One 2008, 3:e3042.
-
(2008)
PLoS One
, vol.3
-
-
Gilbert, J.A.1
Field, D.2
Huang, Y.3
Edwards, R.4
Li, W.5
Gilna, P.6
Joint, I.7
-
12
-
-
33646540114
-
Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses
-
Haible D., Kober S., Jeske H. Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. J. Virol. Methods 2006, 135:9-16.
-
(2006)
J. Virol. Methods
, vol.135
, pp. 9-16
-
-
Haible, D.1
Kober, S.2
Jeske, H.3
-
13
-
-
0018179268
-
Isolation of large bacterial plasmids and characterization of the P2 incompatibility group plasmids pMG1 and pMG5
-
Hansen J.B., Olsen R.H. Isolation of large bacterial plasmids and characterization of the P2 incompatibility group plasmids pMG1 and pMG5. J. Bacteriol. 1978, 135:227-238.
-
(1978)
J. Bacteriol.
, vol.135
, pp. 227-238
-
-
Hansen, J.B.1
Olsen, R.H.2
-
14
-
-
0033621572
-
Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria
-
Heeb S., Itoh Y., Nishijyo T., Schnider U., Keel C., Wade J., Walsh U., O'Gara F., Haas D. Small, stable shuttle vectors based on the minimal pVS1 replicon for use in gram-negative, plant-associated bacteria. Mol. Plant Microbe Interact. 2000, 13:232-237.
-
(2000)
Mol. Plant Microbe Interact.
, vol.13
, pp. 232-237
-
-
Heeb, S.1
Itoh, Y.2
Nishijyo, T.3
Schnider, U.4
Keel, C.5
Wade, J.6
Walsh, U.7
O'Gara, F.8
Haas, D.9
-
15
-
-
49249097625
-
Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty
-
Heuer H., Abdo Z., Smalla K. Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty. FEMS Microbiol. Ecol. 2008, 65:361-371.
-
(2008)
FEMS Microbiol. Ecol.
, vol.65
, pp. 361-371
-
-
Heuer, H.1
Abdo, Z.2
Smalla, K.3
-
16
-
-
84858185944
-
Composition and Similarity of bovine rumen microbiota across individual animals
-
Jami E., Mizrahi I. Composition and Similarity of bovine rumen microbiota across individual animals. PLoS One 2012, 7:e33306.
-
(2012)
PLoS One
, vol.7
-
-
Jami, E.1
Mizrahi, I.2
-
17
-
-
84878276427
-
Exploring the bovine rumen bacterial community from birth to adulthood
-
Jami E., Israel A., Kotser A., Mizrahi I. Exploring the bovine rumen bacterial community from birth to adulthood. ISME J. 2013, 7:1069-1079.
-
(2013)
ISME J.
, vol.7
, pp. 1069-1079
-
-
Jami, E.1
Israel, A.2
Kotser, A.3
Mizrahi, I.4
-
18
-
-
65449151413
-
Rolling-circle amplification of viral DNA genomes using phi29 polymerase
-
Johne R., Muller H., Rector A., van Ranst M., Stevens H. Rolling-circle amplification of viral DNA genomes using phi29 polymerase. Trends Microbiol. 2009, 17:205-211.
-
(2009)
Trends Microbiol.
, vol.17
, pp. 205-211
-
-
Johne, R.1
Muller, H.2
Rector, A.3
van Ranst, M.4
Stevens, H.5
-
19
-
-
33845959386
-
Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome
-
Jones B.V., Marchesi J.R. Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome. Nat. Methods 2007, 4:55-61.
-
(2007)
Nat. Methods
, vol.4
, pp. 55-61
-
-
Jones, B.V.1
Marchesi, J.R.2
-
20
-
-
0019433725
-
Rapid procedure for detection and isolation of large and small plasmids
-
Kado C.I., Liu S.T. Rapid procedure for detection and isolation of large and small plasmids. J. Bacteriol. 1981, 145:1365-1373.
-
(1981)
J. Bacteriol.
, vol.145
, pp. 1365-1373
-
-
Kado, C.I.1
Liu, S.T.2
-
21
-
-
58149179980
-
RrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea
-
Lee Z.M., Bussema C., Schmidt T.M. rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. Nucleic Acids Res. 2009, 37:D489-D493.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Lee, Z.M.1
Bussema, C.2
Schmidt, T.M.3
-
22
-
-
0029100702
-
A new set of useful cloning and expression vectors derived from pBlueScript
-
Mayer M.P. A new set of useful cloning and expression vectors derived from pBlueScript. Gene 1995, 163:41-46.
-
(1995)
Gene
, vol.163
, pp. 41-46
-
-
Mayer, M.P.1
-
23
-
-
0031905297
-
Rolling-circle plasmids from Bacillus subtilis: complete nucleotide sequences and analyses of genes of pTA1015, pTA1040, pTA1050 and pTA1060, and comparisons with related plasmids from gram-positive bacteria
-
Meijer W.J., Wisman G.B., Terpstra P., Thorsted P.B., Thomas C.M., Holsappel S., Venema G., Bron S. Rolling-circle plasmids from Bacillus subtilis: complete nucleotide sequences and analyses of genes of pTA1015, pTA1040, pTA1050 and pTA1060, and comparisons with related plasmids from gram-positive bacteria. FEMS Microbiol. Rev. 1998, 21:337-368.
-
(1998)
FEMS Microbiol. Rev.
, vol.21
, pp. 337-368
-
-
Meijer, W.J.1
Wisman, G.B.2
Terpstra, P.3
Thorsted, P.B.4
Thomas, C.M.5
Holsappel, S.6
Venema, G.7
Bron, S.8
-
24
-
-
72849144434
-
Sequencing technologies - the next generation
-
Metzker M.L. Sequencing technologies - the next generation. Nat. Rev. Genet. 2010, 11:31-46.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
25
-
-
0029085552
-
Construction of a series of pACYC-derived plasmid vectors
-
Nakano Y., Yoshida Y., Yamashita Y., Koga T. Construction of a series of pACYC-derived plasmid vectors. Gene 1995, 162:157-158.
-
(1995)
Gene
, vol.162
, pp. 157-158
-
-
Nakano, Y.1
Yoshida, Y.2
Yamashita, Y.3
Koga, T.4
-
26
-
-
0037362854
-
Mobile genetic elements and bacterial toxinoses: the superantigen-encoding pathogenicity islands of Staphylococcus aureus
-
Novick R.P. Mobile genetic elements and bacterial toxinoses: the superantigen-encoding pathogenicity islands of Staphylococcus aureus. Plasmid 2003, 49:93-105.
-
(2003)
Plasmid
, vol.49
, pp. 93-105
-
-
Novick, R.P.1
-
27
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman H., Lawrence J.G., Groisman E.A. Lateral gene transfer and the nature of bacterial innovation. Nature 2000, 405:299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
28
-
-
0029871784
-
Structural organization of pRAM4, a cryptic plasmid from Prevotella ruminicola
-
Ogata K., Aminov R.I., Nagamine T., Benno Y., Sekizaki T., Mitsumori M., Minato H., Itabashi H. Structural organization of pRAM4, a cryptic plasmid from Prevotella ruminicola. Plasmid 1996, 35:91-97.
-
(1996)
Plasmid
, vol.35
, pp. 91-97
-
-
Ogata, K.1
Aminov, R.I.2
Nagamine, T.3
Benno, Y.4
Sekizaki, T.5
Mitsumori, M.6
Minato, H.7
Itabashi, H.8
-
29
-
-
79958220279
-
Phylogeny and compatibility: plasmid classification in the genomics era
-
Petersen J. Phylogeny and compatibility: plasmid classification in the genomics era. Arch. Microbiol. 2011, 193:313-321.
-
(2011)
Arch. Microbiol.
, vol.193
, pp. 313-321
-
-
Petersen, J.1
-
30
-
-
77954627922
-
Viruses in the faecal microbiota of monozygotic twins and their mothers
-
Reyes A., Haynes M., Hanson N., Angly F.E., Heath A.C., Rohwer F., Gordon J.I. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 2010, 466:334-338.
-
(2010)
Nature
, vol.466
, pp. 334-338
-
-
Reyes, A.1
Haynes, M.2
Hanson, N.3
Angly, F.E.4
Heath, A.C.5
Rohwer, F.6
Gordon, J.I.7
-
31
-
-
23944495106
-
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot
-
Schloss P.D., Handelsman J. Metagenomics for studying unculturable microorganisms: cutting the Gordian knot. Genome Biol. 2005, 6:229.
-
(2005)
Genome Biol.
, vol.6
, pp. 229
-
-
Schloss, P.D.1
Handelsman, J.2
-
32
-
-
17944402895
-
The 64 508bp IncP-1beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1beta group
-
Schluter A., Heuer H., Szczepanowski R., Forney L.J., Thomas C.M., Puhler A., Top E.M. The 64 508bp IncP-1beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1beta group. Microbiology 2003, 149:3139-3153.
-
(2003)
Microbiology
, vol.149
, pp. 3139-3153
-
-
Schluter, A.1
Heuer, H.2
Szczepanowski, R.3
Forney, L.J.4
Thomas, C.M.5
Puhler, A.6
Top, E.M.7
-
33
-
-
72849114230
-
Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
-
Sorek R., Cossart P. Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nat. Rev. Genet. 2010, 11:9-16.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 9-16
-
-
Sorek, R.1
Cossart, P.2
-
34
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh P.J., Ley R.E., Mahowald M.A., Magrini V., Mardis E.R., Gordon J.I. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444:1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
35
-
-
49649087440
-
Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome
-
Urich T., Lanzen A., Qi J., Huson D.H., Schleper C., Schuster S.C. Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PLoS One 2008, 3:e2527.
-
(2008)
PLoS One
, vol.3
-
-
Urich, T.1
Lanzen, A.2
Qi, J.3
Huson, D.H.4
Schleper, C.5
Schuster, S.C.6
-
36
-
-
0038504021
-
Genomic islands and the evolution of catabolic pathways in bacteria
-
van der Meer J.R., Sentchilo V. Genomic islands and the evolution of catabolic pathways in bacteria. Curr. Opin. Biotechnol. 2003, 14:248-254.
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 248-254
-
-
van der Meer, J.R.1
Sentchilo, V.2
-
37
-
-
0033989325
-
Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers
-
Walter J., Tannock G.W., Tilsala-Timisjarvi A., Rodtong S., Loach D.M., Munro K., Alatossava T. Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers. Appl. Environ. Microbiol. 2000, 66:297-303.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 297-303
-
-
Walter, J.1
Tannock, G.W.2
Tilsala-Timisjarvi, A.3
Rodtong, S.4
Loach, D.M.5
Munro, K.6
Alatossava, T.7
-
38
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke F., Luginbuhl P., Ivanova N., Ghassemian M., Richardson T.H., Stege J.T., Cayouette M., McHardy A.C., Djordjevic G., Aboushadi N., Sorek R., Tringe S.G., Podar M., Martin H.G., Kunin V., Dalevi D., Madejska J., Kirton E., Platt D., Szeto E., Salamov A., Barry K., Mikhailova N., Kyrpides N.C., Matson E.G., Ottesen E.A., Zhang X., Hernandez M., Murillo C., Acosta L.G., Rigoutsos I., Tamayo G., Green B.D., Chang C., Rubin E.M., Mathur E.J., Robertson D.E., Hugenholtz P., Leadbetter J.R. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 2007, 450:560-565.
-
(2007)
Nature
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
Stege, J.T.6
Cayouette, M.7
McHardy, A.C.8
Djordjevic, G.9
Aboushadi, N.10
Sorek, R.11
Tringe, S.G.12
Podar, M.13
Martin, H.G.14
Kunin, V.15
Dalevi, D.16
Madejska, J.17
Kirton, E.18
Platt, D.19
Szeto, E.20
Salamov, A.21
Barry, K.22
Mikhailova, N.23
Kyrpides, N.C.24
Matson, E.G.25
Ottesen, E.A.26
Zhang, X.27
Hernandez, M.28
Murillo, C.29
Acosta, L.G.30
Rigoutsos, I.31
Tamayo, G.32
Green, B.D.33
Chang, C.34
Rubin, E.M.35
Mathur, E.J.36
Robertson, D.E.37
Hugenholtz, P.38
Leadbetter, J.R.39
more..
-
39
-
-
80053908791
-
Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge
-
Zhang T., Zhang X.X., Ye L. Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge. PLoS One 2011, 6:e26041.
-
(2011)
PLoS One
, vol.6
-
-
Zhang, T.1
Zhang, X.X.2
Ye, L.3
|