Transmission network of an HIV type 1 strain with K103N in young Belgian patients from different risk groups

AIDS Research and Human Retroviruses

Volumn 29, Issue 10, 2013, Pages 1306-1309

  Ruelle, Jean ^a   Ingels, Marie Gabrielle ^a   Jnaoui, Karima ^a   Ausselet, Nathalie ^b   Vincent, Anne ^c   Sasse, André ^d   Verhofstede, Chris ^e   Goubau, Patrick ^a  

^a UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^b UNIVERSITY HOSPITAL OF MONT GODINNE   (Belgium)

^c CLINIQUES UNIVERSITAIRES SAINT LUC   (Belgium)

^d SCIENTIFIC INSTITUTE OF PUBLIC HEALTH   (Belgium)

^e GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

NONNUCLEOSIDE REVERSE TRANSCRIPTASE INHIBITOR; RNA DIRECTED DNA POLYMERASE;

ADULT; ANTIVIRAL RESISTANCE; ARTICLE; BELGIUM; BISEXUALITY; CLINICAL ARTICLE; DRUG TREATMENT FAILURE; FEMALE; GENE MUTATION; HOMOSEXUALITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; MALE; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; VIRUS TRANSMISSION;

ADOLESCENT; ADULT; BELGIUM; CLUSTER ANALYSIS; FEMALE; GENOTYPE; HIV INFECTIONS; HIV REVERSE TRANSCRIPTASE; HIV-1; HUMANS; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MUTANT PROTEINS; MUTATION, MISSENSE; PHYLOGENY; YOUNG ADULT;

EID: 84885138600     PISSN: 08892229     EISSN: 19318405     Source Type: Journal    
DOI: 10.1089/aid.2013.0108     Document Type: Article

References (18)

1. Frentz D, Boucher CA, and van de Vijver DA: Temporal changes in the epidemiology of transmission of drug-resistant HIV-1 across the world. AIDS Rev 2012;14(1):17-27.
2. Vercauteren J, Wensing AM, van de Vijver DA, et al.: Transmission of drug-resistant HIV-1 is stabilizing in Europe. J Infect Dis 2009;200(10):1503- 1508.
3. Wittkop L, Gunthard HF, de Wolf F, et al.: Effect of transmitted drug resistance on virological and immunological response to initial combination antiretroviral therapy for HIV (EuroCoord-CHAIN joint project): A European multicohort study. Lancet Infect Dis 2011;11(5):363-371.
4. Gupta RK, Jordan MR, Sultan BJ, et al.: Global trends in antiretroviral resistance in treatment-naive individuals with HIV after rollout of antiretroviral treatment in resourcelimited settings: A global collaborative study and metaregression analysis. Lancet 2012;380(9849):1250-1258.
5. Price MA, Wallis CL, Lakhi S, et al.: Transmitted HIV type 1 drug resistance among individuals with recent HIV infection in East and Southern Africa. AIDS Res Hum Retroviruses 2011;27(1):5-12.
6. Rahim S, Fredrick LM, da Silva BA, Bernstein B, and King MS: Geographic and temporal trends of transmitted HIV-1 drug resistance among antiretroviral-naive subjects screening for two clinical trials in North America and Western Europe. HIV Clin Trials 2009;10(2):94-103.
7. Bartmeyer B, Kuecherer C, Houareau C, et al.: Prevalence of transmitted drug resistance and impact of transmitted resistance on treatment success in the German HIV-1 Seroconverter Cohort. PLoS One 2010;5(10):e12718.
8. Frange P, Meyer L, Deveau C, et al.: Recent HIV-1 infection contributes to the viral diffusion over the French territory with a recent increasing frequency. PLoS One 2012;7(2):e31695.
9. Yerly S, Junier T, Gayet-Ageron A, et al.: The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection. AIDS 2009;23(11):1415-1423.
10. Gianotti N, Galli L, Boeri E, et al.: In vivo dynamics of the K103N mutation following the withdrawal of nonnucleoside reverse transcriptase inhibitors in human immunodeficiency virus-infected patients. New Microbiol 2005; 28(4):319-326. (Pubitemid 41820615)
11. EACS: European AIDS Clinical Society Guidelines Version 6.1. www.eacs.eu. Accessed November 7, 2011.
12. Edgar RC: MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004;5:113.
13. Felsenstein J: Evolutionary trees from DNA sequences: A maximumlikelihood approach. JMol Evol 1981;17(6):368-376. (Pubitemid 11016207)
14. Guindon S and Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003;52(5):696-704. (Pubitemid 37365050)
15. Huelsenbeck JP and Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001;17(8):754-755. (Pubitemid 32851390)
16. Tavaré S: Some probabilistic and statistical problems on the analysis of DNA sequences. Lect Math Life Sci 1986;17:57-86.
17. Leigh Brown AJ, Lycett SJ, Weinert L, Hughes GJ, Fearnhill E, and Dunn DT: Transmission network parameters estimated from HIV sequences for a nationwide epidemic. J Infect Dis 2011;204(9):1463-1469.
18. Aldous JL, Pond SK, Poon A, et al.: Characterizing HIV transmission networks across the United States. Clin Infect Dis 2012;55(8):1135-1143.