Copper redox transformation and complexation by reduced and oxidized soil humic acid. 1. X-ray absorption spectroscopy study

Environmental Science and Technology

Volumn 47, Issue 19, 2013, Pages 10903-10911

  Fulda, Beate ^a   Voegelin, Andreas ^b   Maurer, Felix ^a   Christl, Iso ^a   Kretzschmar, Ruben ^a  

^a ETH ZURICH   (Switzerland)

^b SWISS FEDERAL INSTITUTE OF AQUATIC SCIENCE AND TECHNOLOGY   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ANOXIC CONDITIONS; COPPER SPECIATIONS; DISPROPORTIONATIONS; ELECTRON-TRANSFER REACTIONS; NATURAL ORGANIC MATTERS; OXIC CONDITIONS; REDOX INTERACTIONS; REDOX TRANSFORMATIONS;

BIOCHEMISTRY; BIOLOGICAL MATERIALS; COORDINATION REACTIONS; COPPER; ORGANIC ACIDS; REDOX REACTIONS; SOILS; X RAY ABSORPTION SPECTROSCOPY;

COPPER COMPOUNDS;

COPPER; HUMIC ACID; NANOPARTICLE; NATURAL ORGANIC MATTER; NITROGEN; SULFUR;

ATOMIC ABSORPTION SPECTROSCOPY; COMPLEXATION; COPPER; COPPER COMPOUND; HUMIC ACID; LIGAND; NITROGEN; ORGANIC MATTER; OXIC CONDITIONS; OXIDATION; REDOX CONDITIONS; REDUCTION; SULFUR; TRANSFORMATION; X-RAY SPECTROSCOPY;

ARTICLE; BINDING AFFINITY; COMPLEX FORMATION; ELECTROCHEMISTRY; ELECTRON TRANSPORT; OXIDATION REDUCTION POTENTIAL; X RAY ABSORPTION SPECTROSCOPY;

COPPER; HUMIC SUBSTANCES; OXIDATION-REDUCTION; OXYGEN; SOIL; X-RAY ABSORPTION SPECTROSCOPY;

EID: 84885130591     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es4024089     Document Type: Article

References (68)

1. Rubino, J. T.; Franz, K. J. Coordination chemistry of copper proteins: How nature handles a toxic cargo for essential function J. Inorg. Biochem. 2012, 107 (1) 129-143
2. Semrau, J. D.; DiSpirito, A. A.; Yoon, S. Methanotrophs and copper FEMS Microbiol. Rev. 2010, 34 (4) 496-531
3. Averill, B. A. Dissimilatory nitrite and nitric oxide reductases Chem. Rev. 1996, 96 (7) 2951-2964
4. Baath, E. Effects of heavy-metals in soil on microbial processes and populations (a review) Water, Air, Soil Pollut. 1989, 47 (3-4) 335-379
5. Fernandes, J. C.; Henriques, F. S. Biochemical, physiological, and structural effects of excess copper in plants Bot. Rev. 1991, 57 (3) 246-273
6. Gaetke, L. M.; Chow, C. K. Copper toxicity, oxidative stress, and antioxidant nutrients Toxicology 2003, 189 (1-2) 147-163
7. McBride, M.; Sauve, S.; Hendershot, W. Solubility control of Cu, Zn, Cd and Pb in contaminated soils Eur. J. Soil Sci. 1997, 48 (2) 337-346
8. 2+-binding sites in aquatic humic substances Environ. Sci. Technol. 2000, 34 (11) 2138-2142
9. Karlsson, T.; Persson, P.; Skyllberg, U. Complexation of copper(II) in organic soils and in dissolved organic matter-EXAFS evidence for chelate ring structures Environ. Sci. Technol. 2006, 40 (8) 2623-2628
10. Korshin, G. V.; Frenkel, A. I.; Stern, E. A. EXAFS study of the inner shell structure in copper(II) complexes with humic substances Environ. Sci. Technol. 1998, 32 (18) 2699-2705
11. Manceau, A.; Matynia, A. The nature of Cu bonding to natural organic matter Geochim. Cosmochim. Acta 2010, 74 (9) 2556-2580
12. 2+ binding sites in soil humic substances using X-ray absorption spectroscopy Geochim. Cosmochim. Acta 1997, 61 (11) 2211-2221
13. Sahrawat, K. L. Organic matter accumulation in submerged soils Adv. Agron. 2004, 81, 169-201
14. Lett, R. E. W.; Fletcher, W. K. Syngenetic sulphide minerals in a copper-rich bog Miner. Deposita 1980, 15 (1) 61-67
15. Lovering, T. S. Organic precipitation of metallic copper U. S. Geol. Surv. Bull. 1927, 795-C, 45-52
16. Hofacker, A. F.; Voegelin, A.; Kaegi, R.; Weber, F. A.; Kretzschmar, R. Temperature-dependent formation of metallic copper and metal sulfide nanoparticles during flooding of a contaminated soil Geochim. Cosmochim. Acta 2013, 103, 316-332
17. Weber, F. A.; Voegelin, A.; Kretzschmar, R. Multi-metal contaminant dynamics in temporarily flooded soil under sulfate limitation Geochim. Cosmochim. Acta 2009, 73 (19) 5513-5527
18. Pham, A. N.; Rose, A. L.; Waite, T. D. Kinetics of Cu(II) reduction by natural organic matter J. Phys. Chem. A 2012, 116 (25) 6590-6599
19. 2 by humic substances Environ. Sci. Technol. 2009, 43 (13) 4902-4908
20. Palmer, N. E.; Freudenthal, J. H.; von Wandruszka, R. Reduction of arsenates by humic materials Environ. Chem. 2006, 3 (2) 131-136
21. Gu, B.; Bian, Y.; Miller, C. L.; Dong, W.; Jiang, X.; Liang, L. Mercury reduction and complexation by natural organic matter in anoxic environments Proc. Natl. Acad. Sci. U.S.A. 2011, 108 (4) 1479-1483
22. Maurer, F.; Christl, I.; Hoffmann, M.; Kretzschmar, R. Reduction and reoxidation of humic acid: Influence on speciation of cadmium and silver Environ. Sci. Technol. 2012, 46 (16) 8808-8816
23. Scott, D. T.; McKnight, D. M.; Blunt-Harris, E. L.; Kolesar, S. E.; Lovley, D. R. Quinone moieties act as electron acceptors in the reduction of humic substances by humics-reducing microorganisms Environ. Sci. Technol. 1998, 32 (19) 2984-2989
24. Lovley, D. R.; Coates, J. D.; Blunt-Harris, E. L.; Phillips, E. J. P.; Woodward, J. C. Humic substances as electron acceptors for microbial respiration Nature 1996, 382 (6590) 445-448
25. Sharma, V. K.; Millero, F. J. Oxidation of copper(I) in seawater Environ. Sci. Technol. 1988, 22 (7) 768-771
26. Fenwick, F. The equilibrium between cupric ion, cuprous ion and metallic copper J. Am. Chem. Soc. 1926, 48 (1) 860-870
27. Yuan, X.; Pham, A. N.; Xing, G.; Rose, A. L.; Waite, T. D. Effects of pH, chloride, and bicarbonate on Cu(I) oxidation kinetics at circumneutral pH Environ. Sci. Technol. 2012, 46 (3) 1527-1535
28. Leal, M. F. C.; Van den Berg, C. M. G. Evidence for strong copper(I) complexation by organic ligands in seawater Aquat. Geochem. 1998, 4 (1) 49-75
29. Smith, D. S.; Bell, R. A.; Kramer, J. R. Metal speciation in natural waters with emphasis on reduced sulfur groups as strong metal binding sites Comp. Biochem. Physiol., Part C: Toxicol. Pharmacol. 2002, 133 (1-2) 65-74
30. Laglera, L. M.; van den Berg, C. M. G. Copper complexation by thiol compounds in estuarine waters Mar. Chem. 2003, 82 (1-2) 71-89
31. Xia, K.; Weesner, F.; Bleam, W. F.; Bloom, P. R.; Skyllberg, U. L.; Helmke, P. A. XANES studies of oxidation states of sulfur in aquatic and soil humic substances Soil Sci. Soc. Am. J. 1998, 62 (5) 1240-1246
32. Prietzel, J.; Thieme, J.; Salome, M.; Knicker, H. Sulfur K-edge XANES spectroscopy reveals differences in sulfur speciation of bulk soils, humic acid, fulvic acid, and particle size separates Soil Biol. Biochem. 2007, 39 (4) 877-890
33. Hutchison, K. J.; Hesterberg, D.; Chou, J. W. Stability of reduced organic sulfur in humic acid as affected by aeration and pH Soil Sci. Soc. Am. J. 2001, 65 (3) 704-709
34. Zhao, F. J.; Lehmann, J.; Solomon, D.; Fox, M. A.; McGrath, S. P. Sulphur speciation and turnover in soils: evidence from sulphur K-edge XANES spectroscopy and isotope dilution studies Soil Biol. Biochem. 2006, 38 (5) 1000-1007
35. Tipping, E. Cation binding by humic substances: Cambridge University Press: Cambridge, 2002.
36. Thorn, K. A.; Cox, L. G. N-15 NMR spectra of naturally abundant nitrogen in soil and aquatic natural organic matter samples of the International Humic Substances Society Org. Geochem. 2009, 40 (4) 484-499
37. Maurer, F.; Christl, I.; Fulda, B.; Voegelin, A.; Kretzschmar, R. Copper redox transformation and complexation by reduced and oxidized soil humic acid. 2. Potentiometric titrations and dialysis cell experiments. Environ. Sci. Technol. 2013, 10.1021/es4024095 (following paper in this issue).
38. Christl, I.; Knicker, H.; Kögel-Knabner, I.; Kretzschmar, R. Chemical heterogeneity of humic substances: characterization of size fractions obtained by hollow-fibre ultrafiltration Eur. J. Soil Sci. 2000, 51 (4) 617-625
39. Aeschbacher, M.; Sander, M.; Schwarzenbach, R. P. Novel electrochemical approach to assess the redox properties of humic substances Environ. Sci. Technol. 2010, 44 (1) 87-93
40. Maurer, F.; Christl, I.; Kretzschmar, R. Reduction and reoxidation of humic acid: Influence on spectroscopic properties and proton binding Environ. Sci. Technol. 2010, 44 (15) 5787-5792
41. Arnesano, F.; Banci, L.; Bertini, I.; Mangani, S.; Thompsett, A. R. A redox switch in CopC: An intriguing copper trafficking protein that binds copper(I) and copper(II) at different sites Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (7) 3814-3819
42. Pufahl, R. A.; Singer, C. P.; Peariso, K. L.; Lin, S. J.; Schmidt, P. J.; Fahrni, C. J.; Culotta, V. C.; Penner-Hahn, J. E.; Ohalloran, T. V. Metal ion chaperone function of the soluble Cu(I) receptor Atx1 Science 1997, 278 (5339) 853-856
43. Hakemian, A. S.; Tinberg, C. E.; Kondapalli, K. C.; Telser, J.; Hoffman, B. M.; Stemmler, T. L.; Rosenzweig, A. C. The copper chelator methanobactin from Methylosinus trichosporium OB3b binds copper(I) J. Am. Chem. Soc. 2005, 127 (49) 17142-17143
44. Fulton, J. L.; Hoffmann, M. M.; Darab, J. G. An X-ray absorption fine structure study of copper(I) chloride coordination structure in water up to 325 C Chem. Phys. Lett. 2000, 330 (3-4) 300-308
45. Brugger, J.; Etschmann, B.; Liu, W.; Testemale, D.; Hazemann, J. L.; Emerich, H.; van Beek, W.; Proux, O. An XAS study of the structure and thermodynamics of Cu(I) chloride complexes in brines up to high temperature (400 C, 600 bar) Geochim. Cosmochim. Acta 2007, 71 (20) 4920-4941
46. Jacquat, O.; Voegelin, A.; Kretzschmar, R. Soil properties controlling Zn speciation and fractionation in contaminated soils Geochim. Cosmochim. Acta 2009, 73 (18) 5256-5272
47. Ravel, B.; Newville, M. ATHENA, ARTEMIS, HEPHAESTUS: Data analysis for X-ray absorption spectroscopy using IFEFFIT J. Synchrotron Radiat. 2005, 12, 537-541
48. Ankudinov, A. L.; Ravel, B.; Rehr, J. J.; Conradson, S. D. Real-space multiple-scattering calculation and interpretation of x-ray-absorption near-edge structure Phys. Rev. B 1998, 58 (12) 7565-7576
49. 2 Bull. Chem. Soc. Jpn. 1982, 55 (1) 126-129
50. Kau, L. S.; Spirasolomon, D. J.; Pennerhahn, J. E.; Hodgson, K. O.; Solomon, E. I. X-ray absorption edge determination of the oxidation state and coordination number of copper: Application to the type 3 site in Rhus vernicifera laccase and its reaction with oxygen J. Am. Chem. Soc. 1987, 109 (21) 6433-6442
51. Alberts, J. J.; Schindle, J. E.; Miller, R. W.; Nutter, D. E. Elemental mercury evolution mediated by humic acid Science 1974, 184 (4139) 895-896
52. Aeschbacher, M.; Graf, C.; Schwarzenbach, R. P.; Sander, M. Antioxidant properties of humic substances Environ. Sci. Technol. 2012, 46 (9) 4916-4925
53. Aeschbacher, M.; Vergari, D.; Schwarzenbach, R. P.; Sander, M. Electrochemical analysis of proton and electron transfer equilibria of the reducible moieties in humic acids Environ. Sci. Technol. 2011, 45 (19) 8385-8394
54. Page, S. E.; Sander, M.; Arnold, W. A.; McNeill, K. Hydroxyl radical formation upon oxidation of reduced humic acids by oxygen in the dark Environ. Sci. Technol. 2012, 46 (3) 1590-1597
55. Pickering, I. J.; George, G. N.; Dameron, C. T.; Kurz, B.; Winge, D. R.; Dance, I. G. X-ray-absorption spectroscopy of cuprous thiolate clusters in proteins and model systems J. Am. Chem. Soc. 1993, 115 (21) 9498-9505
56. Koch, S. A.; Fikar, R.; Millar, M.; Osullivan, T. Steric control of metal thiolate coordination-Synthesis and structure of monomeric cobalt(II) and copper(I) thiolate complexes Inorg. Chem. 1984, 23 (2) 121-122
57. 2- cluster Inorg. Chem. 1980, 19 (10) 2993-2998
58. 2)copper(II) Acta Crystallogr., Sect. E: Struct. Rep. Online 2007, 63, M1254-M1255
59. Sarret, G.; Favier, A.; Coves, J.; Hazemann, J.-L.; Mergeay, M.; Bersch, B. CopK from Cupriavidus metallidurans CH34 binds Cu(I) in a tetrathioether site: Characterization by X-ray absorption and NMR spectroscopy J. Am. Chem. Soc. 2010, 132 (11) 3770-3777
60. Helz, G. R.; Charnock, J. M.; Vaughan, D. J.; Garner, C. D. Multinuclearity of aqueous copper and zinc bisulfide complexes-An EXAFS investigation Geochim. Cosmochim. Acta 1993, 57 (1) 15-25
61. Poger, D.; Fillaux, C.; Miras, R.; Crouzy, S.; Delangle, P.; Mintz, E.; Den Auwer, C.; Ferrand, M. Interplay between glutathione, Atx1 and copper: X-ray absorption spectroscopy determination of Cu(I) environment in an Atx1 dimer J. Biol. Inorg. Chem. 2008, 13 (8) 1239-1248
62. Rorabacher, D. B. Electron transfer by copper centers Chem. Rev. 2004, 104 (2) 651-697
63. Rorabacher, D. B.; Schroeder, R. R. Electrochemistry of Copper. In Encyclopedia of Electrochemistry; Bard, A. J.; Stratmann, M., Eds.; John Wiley and Sons: 2007; Vol. 11.
64. Karlsson, T.; Persson, P.; Skyllberg, U. Extended X-ray absorption fine structure spectroscopy evidence for the complexation of cadmium by reduced sulfur groups in natural organic matter Environ. Sci. Technol. 2005, 39 (9) 3048-3055
65. Skyllberg, U.; Bloom, P. R.; Qian, J.; Lin, C. M.; Bleam, W. F. Complexation of mercury(II) in soil organic matter: EXAFS evidence for linear two-coordination with reduced sulfur groups Environ. Sci. Technol. 2006, 40 (13) 4174-4180
66. Xia, K.; Skyllberg, U. L.; Bleam, W. F.; Bloom, P. R.; Nater, E. A.; Helmke, P. A. X-ray absorption spectroscopic evidence for the complexation of Hg(II) by reduced sulfur in soil humic substances Environ. Sci. Technol. 1999, 33 (2) 257-261
67. Stumm, W.; Morgan, J. J. Aquatic Chemistry-Chemical Equilibria and Rates in Natural Waters; Wiley-Interscience: New York, 1996.
68. Skyllberg, U.; Drott, A. Competition between disordered iron sulfide and natural organic matter associated thiols for mercury(II)-An EXAFS study Environ. Sci. Technol. 2010, 44 (4) 1254-1259