Microtubule catastrophe from protofilament dynamics

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 88, Issue 3, 2013, Pages

  Jemseena, V ^a   Gopalakrishnan, Manoj ^a  

^a INDIAN INSTITUTE OF TECHNOLOGY MADRAS   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ASYMPTOTIC BEHAVIORS; EUKARYOTIC CELLS; GUANOSINE TRIPHOSPHATE; MICROTUBULE FILAMENTS; ONE-DIMENSIONAL MODEL; PERTURBATIVE APPROACH; QUASI-STEADY-STATE ASSUMPTIONS; STEADY-STATE CONDITION;

DYNAMICS;

DISASTERS;

GUANOSINE TRIPHOSPHATE;

ARTICLE; BIOLOGICAL MODEL; METABOLISM; MICROTUBULE;

GUANOSINE TRIPHOSPHATE; MICROTUBULES; MODELS, BIOLOGICAL;

EID: 84885112509     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.88.032717     Document Type: Article

References (40)

1. A. Desai and T. Mitchison, Annu. Rev. Cell Dev. Biol. ARDBF8 1081-0706 10.1146/annurev.cellbio.13.1.83 13, 83 (1997). (Pubitemid 28034521)
2. T. Mitchison and M. Kirschner, Nature NATUAS 0028-0836 10.1038/312232a0 312, 232 (1984). (Pubitemid 15201997)
3. M. K. Gardner, M. Zanic, and J. Howard, Curr. Opin. Cell Biol. 10.1016/j.ceb.2012.09.006 25, 14 (2013).
4. M. Caplow and J. Shanks, Mol. Biol. Cell 10.1091/mbc.7.4.663 7, 663 (1996).
5. H. T. Schek III, M. K. Gardner, J. Cheng, D. J. Odde, and A. J. Hunt, Curr. Biol. CUBLE2 0960-9822 10.1016/j.cub.2007.07.011 17, 1445 (2007). (Pubitemid 47333157)
6. T. L. Hill and Y. Chen, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.81.18.5772 81, 5772 (1984).
7. H. Flyvbjerg, T. E. Holy, and S. Leibler, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.73.2372 73, 2372 (1994);
8. H. Flyvbjerg, T. E. Holy, and S. Leibler, Phys. Rev. E 1063-651X 10.1103/PhysRevE.54.5538 54, 5538 (1996).
9. G. Margolin, I. V. Gregoretti, H. V. Goodson, and M. S. Alber, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.74.041920 74, 041920 (2006). (Pubitemid 44656334)
10. T. Antal, P. L. Krapivsky, S. Redner, M. Mailman, and B. Chakraborty, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.76.041907 76, 041907 (2007). (Pubitemid 47569149)
11. R. Padinhateeri, A. B. Kolomeisky, and D. Lacoste, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2011.12.059 102, 1274 (2012).
12. V. VanBuren, D. J. Odde, and L. Cassimeris, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.092504999 99, 6035 (2002); (Pubitemid 34493260)
13. V. VanBuren, L. Cassimeris, and D. J. Odde, Biophys. J. BIOJAU 0006-3495 10.1529/biophysj.105.060913 89, 2911 (2005). (Pubitemid 41636049)
14. M. I. Molodtsov, E. L. Grishchuk, A. K. Efremov, J. R. McIntosh, and F. I. Ataullakhanov, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0501142102 102, 4353 (2005). (Pubitemid 40397115)
15. B. M. Piette, PLoS ONE 1932-6203 10.1371/journal.pone.0006378 4, e6378 (2009).
16. L. Brun, B. Rupp, J. J. Ward, and F. Nédélec, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0910774106 106, 21173 (2009).
17. G. Margolin, Mol. Biol. Cell MBCEEV 1059-1524 10.1091/mbc.E11-08-0688 23, 642 (2012).
18. X. Li, R. Lipowsky, and J. Kierfeld, Europhys. Lett. EULEEJ 0295-5075 10.1209/0295-5075/89/38010 89, 38010 (2010).
19. P. Ranjith, K. Mallick, J.- F. Joanny, and D. Lacoste, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2009.12.4306 98, 1418 (2010).
20. See Supplemental Material at http://link.aps.org/supplemental/10.1103/ PhysRevE.88.032717 for details of the calculations.
21. H. Bowne-Anderson, M. Zanic, M. Kauer, and J. Howard, Bioessays BIOEEJ 0265-9247 10.1002/bies.201200131 35, 452 (2013).
22. D. J. Odde, L. Cassimeris, and H. M. Buettner, Biophys. J. BIOJAU 0006-3495 10.1016/S0006-3495(95)79953-2 69, 796 (1995).
23. T. Stepanova, Curr. Biol. CUBLE2 0960-9822 10.1016/j.cub.2010.04.024 20, 1023 (2010).
24. M. K. Gardner, M. Zanic, C. Gell, V. Bormuth, and J. Howard, Cell CELLB5 0092-8674 10.1016/j.cell.2011.10.037 147, 1092 (2011).
25. D. T. Gillespie, J. Phys. Chem. JPCHAX 0022-3654 10.1021/j100540a008 81, 2340 (1977).
26. R. A. Walker, E. T. ÖBrien, N. K. Pryer, M. F. Soboeiro, W. A. Voter, H. P. Erickson, and E. D. Salmon, J. Cell Biol. JCLBA3 0021-9525 10.1083/jcb.107.4.1437 107, 1437 (1988).
27. D. N. Drechsel, A. A. Hyman, M. H. Cobb, and M. W. Kirschner, Mol. Biol. Cell MBCEEV 1059-1524 10.1091/mbc.3.10.1141 3, 1141 (1992).
28. M. E. Janson, M. E. de Dood, and M. Dogterom, J. Cell Biol. JCLBA3 0021-9525 10.1083/jcb.200301147 161, 1029 (2003). (Pubitemid 36870165)
29. Wolfram Research, Inc., mathematica, Version 7.0, Champaign, IL (2008).
30. M. Dogterom and B. Yurke, Science SCIEAS 0036-8075 10.1126/science.278. 5339.856 278, 856 (1997). (Pubitemid 27467922)
31. A. Mogilner and G. Oster, Eur. Biophys. J. EBJOE8 0175-7571 10.1007/s002490050204 28, 235 (1999). (Pubitemid 29225601)
32. G. S. van Doorn, C. Tanase, B. M. Mulder, and M. Dogterom, Eur. Biophys. J. EBJOE8 0175-7571 10.1007/s002490050245 29, 2 (2000).
33. A. B. Kolomeisky and M. E. Fisher, Biophys. J. BIOJAU 0006-3495 10.1016/S0006-3495(01)76002-X 80, 149 (2001).
34. J. Krawczyk and J. Kierfeld, Europhys. Lett. EULEEJ 0295-5075 10.1209/0295-5075/93/28006 93, 28006 (2011).
35. D. R. Drummond and R. A. Cross, Curr. Biol. CUBLE2 0960-9822 10.1016/S0960-9822(00)00570-4 10, 766 (2000); (Pubitemid 30466939)
36. Y. A. Komarova, I. A. Vorobjev, and G. G. Borisy, J. Cell Sci. 115, 3527 (2002);
37. D. Foethke, T. Makushok, D. Brunner, and F. Nédélec, Mol. Syst. Biol. 1744-4292 10.1038/msb.2008.76 5, 241 (2009);
38. C. Tischer, D. Brunner, and M. Dogterom, Mol. Syst. Biol. 1744-4292 10.1038/msb.2009.5 5, 250 (2009).
39. Y. Zhang, J. Biol. Chem. JBCHA3 0021-9258 10.1074/jbc.M111.260208 286, 39439 (2011).
40. B. Zelinski, N. Müller, and J. Kierfeld, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.86.041918 86, 041918 (2012).