SCOPUS 정보 검색 플랫폼

Molecular BioSystems

Volumn 9, Issue 11, 2013, Pages 2627-2634

Activation mechanism of claudin-4 by ephrin type-A receptor 2: A molecular dynamics approach

(3) Bhavaniprasad, V a Febin Prabhu Dass, J a Jayanthi, S a

a VIT UNIVERSITY (India)

Author keywords

[No Author keywords available]

Indexed keywords

CLAUDIN 4; EPHRIN RECEPTOR A2; PROTEIN BINDING;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; HUMAN; HYDROGEN BOND; METABOLISM; MOLECULAR DOCKING; MOLECULAR DYNAMICS; MOLECULAR GENETICS; PROTEIN BINDING; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; CLAUDIN-4; HUMANS; HYDROGEN BONDING; MOLECULAR DOCKING SIMULATION; MOLECULAR DYNAMICS SIMULATION; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN CONFORMATION; RECEPTOR, EPHA2; SEQUENCE ALIGNMENT;

EID: 84885098934 PISSN: 1742206X EISSN: 17422051 Source Type: Journal
DOI: 10.1039/c3mb70271e Document Type: Article

Times cited : (5)

References (48)

1
- 70350002060
- The claudins
- L. N. Madhu J. M. Patrice The claudins GenomeBiology 2009 10 235
- (2009) GenomeBiology , vol.10 , pp. 235
- Madhu, L.N.¹ Patrice, J.M.²

2
- 33646492929
- N. N. Salama N. D. Eddington A. Fasano Adv. Drug Delivery Rev. 2006 58 1 15 28
- (2006) Adv. Drug Delivery Rev. , vol.58 , Issue.1 , pp. 15-28
- Salama, N.N.¹ Eddington, N.D.² Fasano, A.³

3
- 33748363100
- M. Kondoh A. Takahashi M. Fujii K. Yagi Y. Watanabe Biol. Pharm. Bull. 2006 29 9 1783 1789
- (2006) Biol. Pharm. Bull. , vol.29 , Issue.9 , pp. 1783-1789
- Kondoh, M.¹ Takahashi, A.² Fujii, M.³ Yagi, K.⁴ Watanabe, Y.⁵

4
- 39849091788
- K. Gerd W. Lars L. M. Sebastian F. H. Reiner P. Jorg E. B. Ingolf Biochim. Biophys. Acta, Biomembr. 2008 1778 631 645
- (2008) Biochim. Biophys. Acta, Biomembr. , vol.1778 , pp. 631-645
- Gerd, K.¹ Lars, W.² Sebastian, L.M.³ Reiner, F.H.⁴ Jorg, P.⁵ Ingolf, E.B.⁶

5
- 27544448588
- P. J. Morin Cancer Res. 2005 65 9603 9606
- (2005) Cancer Res. , vol.65 , pp. 9603-9606
- Morin, P.J.¹

6
- 0035503028
- H. Long C. D. Crean W. H. Lee O. W. Cummings T. G. Gabig Cancer Res. 2001 61 7878 7881
- (2001) Cancer Res. , vol.61 , pp. 7878-7881
- Long, H.¹ Crean, C.D.² Lee, W.H.³ Cummings, O.W.⁴ Gabig, T.G.⁵

7
- 0141885097
- P. Michl C. Barth M. Buchholz M. M. Lerch M. Rolke K. H. Holzmann A. Menke H. Fensterer K. Giehl M. Lohr G. Leder T. Iwamura G. Adler T. M. Gress Cancer Res. 2003 63 6265 6271
- (2003) Cancer Res. , vol.63 , pp. 6265-6271
- Michl, P.¹ Barth, C.² Buchholz, M.³ Lerch, M.M.⁴ Rolke, M.⁵ Holzmann, K.H.⁶ Menke, A.⁷ Fensterer, H.⁸ Giehl, K.⁹ Lohr, M.¹⁰ Leder, G.¹¹ Iwamura, T.¹² Adler, G.¹³ Gress, T.M.¹⁴

8
- 0242468133
- L. B. Rangel C. A. Sherman-Baust R. P. Wernyj D. R. Schwartz K. R. Cho P. J. Morin Oncogene 2003 22 7225 7232
- (2003) Oncogene , vol.22 , pp. 7225-7232
- Rangel, L.B.¹ Sherman-Baust, C.A.² Wernyj, R.P.³ Schwartz, D.R.⁴ Cho, K.R.⁵ Morin, P.J.⁶

9
- 1942501592
- S. L. Kominsky M. Vali D. Korz T. G. Gabig S. A. Weitzman P. Argani S. Sukumar Am. J. Pathol. 2004 164 1627 1633
- (2004) Am. J. Pathol. , vol.164 , pp. 1627-1633
- Kominsky, S.L.¹ Vali, M.² Korz, D.³ Gabig, T.G.⁴ Weitzman, S.A.⁵ Argani, P.⁶ Sukumar, S.⁷

10
- 23844551736
- R. Agarwal T. D'Souza P. J. Morin Cancer Res. 2005 65 7378 7385
- (2005) Cancer Res. , vol.65 , pp. 7378-7385
- Agarwal, R.¹ D'Souza, T.² Morin, P.J.³

11
- 33746925965
- S. L. Kominsky Expert Rev. Mol. Med. 2006 8 1 11
- (2006) Expert Rev. Mol. Med. , vol.8 , pp. 1-11
- Kominsky, S.L.¹

12
- 74749100893
- A. Ouban A. A. Ahmed Histol. Histopathol. 2010 25 83 90
- (2010) Histol. Histopathol. , vol.25 , pp. 83-90
- Ouban, A.¹ Ahmed, A.A.²

13
- 0036006818
- N. Cheng D. M. Brantley J. Chen Cytokine Growth Factor Rev. 2002 13 1 75 85
- (2002) Cytokine Growth Factor Rev. , vol.13 , Issue.1 , pp. 75-85
- Cheng, N.¹ Brantley, D.M.² Chen, J.³

14
- 12144291332
- H. Kataoka H. Iqarashi M. Kanamori M. Ihara J. D. Wang Y. J. Wang Z. Y. Li T. Shimamura T. Kobayashi K. Maruyama T. Nakamura H. Arai M. Kajimura H. Hanai M. Tanaka H. Sugimura Cancer Sci. 2004 95 136 141
- (2004) Cancer Sci. , vol.95 , pp. 136-141
- Kataoka, H.¹ Iqarashi, H.² Kanamori, M.³ Ihara, M.⁴ Wang, J.D.⁵ Wang, Y.J.⁶ Li, Z.Y.⁷ Shimamura, T.⁸ Kobayashi, T.⁹ Maruyama, K.¹⁰ Nakamura, T.¹¹ Arai, H.¹² Kajimura, M.¹³ Hanai, H.¹⁴ Tanaka, M.¹⁵ Sugimura, H.¹⁶

15
- 29644437500
- T. Masamitsu K. Reiko S. Ryuichi J. Biol. Chem. 2005 280 51 42375 42382
- (2005) J. Biol. Chem. , vol.280 , Issue.51 , pp. 42375-42382
- Masamitsu, T.¹ Reiko, K.² Ryuichi, S.³

16
- 77954065271
- A. Roy A. Kucukural Y. Zhang Nat. Protoc. 2010 5 4 725 738
- (2010) Nat. Protoc. , vol.5 , Issue.4 , pp. 725-738
- Roy, A.¹ Kucukural, A.² Zhang, Y.³

17
- 84860917638
- Z. Yang BMC Bioinformatics 2008 9 40
- (2008) BMC Bioinformatics , vol.9 , pp. 40
- Yang, Z.¹

18
- 0000243829
- R. A. Laskowski M. W. MacArthur D. S. Moss J. M. Thornton J. Appl. Crystallogr. 1993 26 2 283 291
- (1993) J. Appl. Crystallogr. , vol.26 , Issue.2 , pp. 283-291
- Laskowski, R.A.¹ Macarthur, M.W.² Moss, D.S.³ Thornton, J.M.⁴

19
- 77955391393
- S. J. DeVries M. van Dijk A. M. J. J. Bonvin Nat. Protoc. 2010 5 883 897
- (2010) Nat. Protoc. , vol.5 , pp. 883-897
- Devries, S.J.¹ Van Dijk, M.² Bonvin, A.M.J.J.³

20
- 0037442962
- C. Dominguez R. Boelens A. M. Bonvin J. Am. Chem. Soc. 2003 125 1731 1737
- (2003) J. Am. Chem. Soc. , vol.125 , pp. 1731-1737
- Dominguez, C.¹ Boelens, R.² Bonvin, A.M.³

21
- 34548232365
- E. Krissinel K. Henrick J. Mol. Biol. 2007 372 774 797
- (2007) J. Mol. Biol. , vol.372 , pp. 774-797
- Krissinel, E.¹ Henrick, K.²

22
- 1242346370
- H. J. C. Berendsen J. R. Grigera T. P. Straatsma J. Phys. Chem. 1987 91 6269 6271
- (1987) J. Phys. Chem. , vol.91 , pp. 6269-6271
- Berendsen, H.J.C.¹ Grigera, J.R.² Straatsma, T.P.³

23
- 0029633168
- H. J. C. Berendsen D. van der Spoel R. van Drunen Comput. Phys. Commun. 1995 91 43 56
- (1995) Comput. Phys. Commun. , vol.91 , pp. 43-56
- Berendsen, H.J.C.¹ Van Der Spoel, D.² Van Drunen, R.³

24
- 33846823909
- T. Darden D. York L. J. Pedersen Chem. Phys. 1993 98 10089 10092
- (1993) Chem. Phys. , vol.98 , pp. 10089-10092
- Darden, T.¹ York, D.² Pedersen, L.J.³

25
- 0000473453
- K. Kholmurodov W. Smith K. Yasuoka T. Darden T. Ebisuzaki J. Comput. Chem. 2000 21 1187 1191
- (2000) J. Comput. Chem. , vol.21 , pp. 1187-1191
- Kholmurodov, K.¹ Smith, W.² Yasuoka, K.³ Darden, T.⁴ Ebisuzaki, T.⁵

26
- 46249092554
- B. Hess C. Kutzner D. Spoel E. Lindahl J. Chem. Theory Comput. 2008 4 435 447
- (2008) J. Chem. Theory Comput. , vol.4 , pp. 435-447
- Hess, B.¹ Kutzner, C.² Spoel, D.³ Lindahl, E.⁴

27
- 0027441950
- A. Amadei A. B. Linssen H. J. Berendsen Proteins: Struct., Funct., Genet. 1993 17 412 425
- (1993) Proteins: Struct., Funct., Genet. , vol.17 , pp. 412-425
- Amadei, A.¹ Linssen, A.B.² Berendsen, H.J.³

28
- 33744814656
- S. Mesentean S. Fischer J. C. Smith Proteins: Struct., Funct., Bioinf. 2006 64 210 218
- (2006) Proteins: Struct., Funct., Bioinf. , vol.64 , pp. 210-218
- Mesentean, S.¹ Fischer, S.² Smith, J.C.³

29
- 84903907015
- 10.1080/07391102.2013.823624
- V. Bhavaniprasad J. Febin Prabhu Dass S. Jayanthi J. Biomol. Struct. Dyn. 2013 10.1080/07391102.2013.823624
- (2013) J. Biomol. Struct. Dyn.
- Bhavaniprasad, V.¹ Febin Prabhu Dass, J.² Jayanthi, S.³

30
- 0037195144
- T. Kortemme D. Baker Proc. Natl. Acad. Sci. U. S. A. 2002 99 22 14116 14121
- (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , Issue.22 , pp. 14116-14121
- Kortemme, T.¹ Baker, D.²

31
- 3242879771
- T. Kortemme D. E. Kim D. Baker Sci. STKE 2004 pl2
- (2004) Sci. STKE , pp. 2
- Kortemme, T.¹ Kim, D.E.² Baker, D.³

32
- 80054078476
- F. Sievers A. Wilm D. Dineen T. J. Gibson K. Karplus W. Li D. G. Higgins Mol. Syst. Biol. 2011 7 539
- (2011) Mol. Syst. Biol. , vol.7 , pp. 539
- Sievers, F.¹ Wilm, A.² Dineen, D.³ Gibson, T.J.⁴ Karplus, K.⁵ Li, W.⁶ Higgins, D.G.⁷

33
- 70349353731
- Schrodinger LLC, Portland, OR
- W. L. DeLano, Pymol, Schrodinger LLC, Portland, OR, 2009
- (2009) Pymol
- Delano, W.L.¹

34
- 0029878720
- W. Humphrey A. Dalke K. Schulten J. Mol. Graphics 1996 14 33 38
- (1996) J. Mol. Graphics , vol.14 , pp. 33-38
- Humphrey, W.¹ Dalke, A.² Schulten, K.³

35
- 33845430353
- Oregon Graduate Institute of Science and Technology, Beaverton, OR
- P. J. Turner, XMGRACE, Version 5.1.19. Center for Coastal and Land-Margin Research, Oregon Graduate Institute of Science and Technology, Beaverton, OR, 2005
- (2005) XMGRACE, Version 5.1.19. Center for Coastal and Land-Margin Research
- Turner, P.J.¹

36
- 78651481923
- M. Shahlaei A. Madadkar-Sobhani K. Mahnam A. Fassihi L. Saghaie M. Mansourian Biochim. Biophys. Acta, Biomembr. 2011 1808 3 802 817
- (2011) Biochim. Biophys. Acta, Biomembr. , vol.1808 , Issue.3 , pp. 802-817
- Shahlaei, M.¹ Madadkar-Sobhani, A.² Mahnam, K.³ Fassihi, A.⁴ Saghaie, L.⁵ Mansourian, M.⁶

37
- 0034044314
- L. J. McGuffin K. Bryson D. T. Jones Bioinformatics 2000 16 4 404 405
- (2000) Bioinformatics , vol.16 , Issue.4 , pp. 404-405
- McGuffin, L.J.¹ Bryson, K.² Jones, D.T.³

38
- 0035910270
- A. Krogh B. Larsson G. Von Heijne E. L. Sonnhammer J. Mol. Biol. 2001 305 3 567 580
- (2001) J. Mol. Biol. , vol.305 , Issue.3 , pp. 567-580
- Krogh, A.¹ Larsson, B.² Von Heijne, G.³ Sonnhammer, E.L.⁴

39
- 39849091788
- G. Krause L. Winkler S. L. Mueller R. F. Haseloff J. Piontek I. E. Blasig Biochim. Biophys. Acta, Biomembr. 2008 1778 3 631 645
- (2008) Biochim. Biophys. Acta, Biomembr. , vol.1778 , Issue.3 , pp. 631-645
- Krause, G.¹ Winkler, L.² Mueller, S.L.³ Haseloff, R.F.⁴ Piontek, J.⁵ Blasig, I.E.⁶

40
- 42449161827
- R. P. Bahadur M. Zacharias Cell. Mol. Life Sci. 2008 65 1059 1072
- (2008) Cell. Mol. Life Sci. , vol.65 , pp. 1059-1072
- Bahadur, R.P.¹ Zacharias, M.²

41
- 0036085515
- O. R. Colegio C. M. Van Itallie H. J. McCrea C. Rahner J. M. Anderson Am. J. Physiol.: Cell Physiol. 2002 283 1 142 147
- (2002) Am. J. Physiol.: Cell Physiol. , vol.283 , Issue.1 , pp. 142-147
- Colegio, O.R.¹ Van Itallie, C.M.² McCrea, H.J.³ Rahner, C.⁴ Anderson, J.M.⁵

42
- 0038701734
- O. R. Colegio C. M. Van Itallie C. Rahner J. M. Anderson Am. J. Physiol.: Cell Physiol. 2003 284 1346 1354
- (2003) Am. J. Physiol.: Cell Physiol. , vol.284 , pp. 1346-1354
- Colegio, O.R.¹ Van Itallie, C.M.² Rahner, C.³ Anderson, J.M.⁴

43
- 0035013499
- C. Van Itallie C. Rahner J. M. Anderson J. Clin. Invest. 2001 107 10 1319 1327
- (2001) J. Clin. Invest. , vol.107 , Issue.10 , pp. 1319-1327
- Van Itallie, C.¹ Rahner, C.² Anderson, J.M.³

44
- 33645963995
- C. M. Van Itallie J. M. Anderson Annu. Rev. Physiol. 2006 68 403 429
- (2006) Annu. Rev. Physiol. , vol.68 , pp. 403-429
- Van Itallie, C.M.¹ Anderson, J.M.²

45
- 0242665742
- C. M. Van Itallie A. S. Fanning J. M. Anderson Am. J. Physiol. Renal Physiol. 2003 285 6 F1078 F1084
- (2003) Am. J. Physiol. Renal Physiol. , vol.285 , Issue.6
- Van Itallie, C.M.¹ Fanning, A.S.² Anderson, J.M.³

46
- 34548047456
- S. Angelow R. El-Husseini S. A. Kanzawa A. S. L. Yu Am. J. Physiol.: Renal Physiol. 2007 293 166 177
- (2007) Am. J. Physiol.: Renal Physiol. , vol.293 , pp. 166-177
- Angelow, S.¹ El-Husseini, R.² Kanzawa, S.A.³ Yu, A.S.L.⁴

47
- 4544311402
- H. Wen D. D. Watry M. C. G. Marcondes H. S. Fox Mol. Cell. Biol. 2004 24 8408 8417
- (2004) Mol. Cell. Biol. , vol.24 , pp. 8408-8417
- Wen, H.¹ Watry, D.D.² Marcondes, M.C.G.³ Fox, H.S.⁴

48
- 27944501678
- J. Hou D. L. Paul D. A. J. Goodenough Cell Sci. 2005 118 5109 5118
- (2005) Cell Sci. , vol.118 , pp. 5109-5118
- Hou, J.¹ Paul, D.L.² Goodenough, D.A.J.³

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.