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Volumn 79, Issue 20, 2013, Pages 6400-6406

Novel cultivation-based approach to understanding the Miscellaneous Crenarchaeotic Group (MCG) archaea from sedimentary ecosystems

Author keywords

[No Author keywords available]

Indexed keywords

AEROBIC CONDITION; CULTIVATION CONDITIONS; DIVERSITY ANALYSIS; ENRICHMENT CULTURE; ESTUARINE SEDIMENTS; MOLECULAR TECHNIQUES; SEDIMENTARY ECOSYSTEMS; SUBSURFACE ENVIRONMENT;

EID: 84885075913     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02153-13     Document Type: Article
Times cited : (29)

References (37)
  • 1
    • 0000940317 scopus 로고
    • Fluorescently labelled, rRNA-targeted oligonucleotide probes in the study of microbial ecology
    • Amann R. 1995. Fluorescently labelled, rRNA-targeted oligonucleotide probes in the study of microbial ecology. Mol. Ecol. 4:543-554.
    • (1995) Mol. Ecol. , vol.4 , pp. 543-554
    • Amann, R.1
  • 2
    • 84866332775 scopus 로고    scopus 로고
    • Growing unculturable bacteria
    • Stewart EJ. 2012. Growing unculturable bacteria. J. Bacteriol. 194:4151-4160.
    • (2012) J. Bacteriol. , vol.194 , pp. 4151-4160
    • Stewart, E.J.1
  • 3
    • 41149093627 scopus 로고    scopus 로고
    • Uncultured archaea in deep marine subsurface sediments: have we caught them all?
    • Teske A, Sørensen KB. 2008. Uncultured archaea in deep marine subsurface sediments: have we caught them all? ISME J. 2:3-18.
    • (2008) ISME J. , vol.2 , pp. 3-18
    • Teske, A.1    Sørensen, K.B.2
  • 4
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: application of genomics to uncultured microorganisms
    • Handelsman J. 2004. Metagenomics: application of genomics to uncultured microorganisms. Microbiol. Mol. Biol. Rev. 68:669-685.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 669-685
    • Handelsman, J.1
  • 6
    • 66349100408 scopus 로고    scopus 로고
    • Microbial community proteomics; elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles
    • Wilmes P, Bond PL. 2009. Microbial community proteomics; elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles. Curr. Opin. Microbiol. 12:310-317.
    • (2009) Curr. Opin. Microbiol. , vol.12 , pp. 310-317
    • Wilmes, P.1    Bond, P.L.2
  • 7
    • 33646547584 scopus 로고    scopus 로고
    • Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances
    • Xu J. 2006. Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances. Mol. Ecol. 15:1713-1731.
    • (2006) Mol. Ecol. , vol.15 , pp. 1713-1731
    • Xu, J.1
  • 8
    • 84867745042 scopus 로고    scopus 로고
    • Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
    • Kubo K, Lloyd KG, Biddle JF, Amann R, Teske A, Knittel K. 2012. Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments. ISME J. 6:1949-1965.
    • (2012) ISME J. , vol.6 , pp. 1949-1965
    • Kubo, K.1    Lloyd, K.G.2    Biddle, J.F.3    Amann, R.4    Teske, A.5    Knittel, K.6
  • 10
    • 77950687902 scopus 로고    scopus 로고
    • Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stableisotope probing
    • Webster G, Rinna J, Roussel EG, Fry JC, Weightman AJ, Parkes RJ. 2010. Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stableisotope probing. FEMS Microbiol. Ecol. 72:179-197.
    • (2010) FEMS Microbiol. Ecol. , vol.72 , pp. 179-197
    • Webster, G.1    Rinna, J.2    Roussel, E.G.3    Fry, J.C.4    Weightman, A.J.5    Parkes, R.J.6
  • 12
    • 84886751330 scopus 로고    scopus 로고
    • Genetic and functional properties of uncultivated Miscellaneous Crenarchaeotal Group (MCG): implications from the metagenome analysis
    • Wang F, Meng J, Zheng Y, Qin D, Xu J, Xiao X. 2011. Genetic and functional properties of uncultivated Miscellaneous Crenarchaeotal Group (MCG): implications from the metagenome analysis. Miner. Mag. 75:2116.
    • (2011) Miner. Mag. , vol.75 , pp. 2116
    • Wang, F.1    Meng, J.2    Zheng, Y.3    Qin, D.4    Xu, J.5    Xiao, X.6
  • 13
    • 33748746842 scopus 로고    scopus 로고
    • Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells
    • Nocker A, Cheung C-Y, Camper AK. 2006. Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells. J. Microbiol. Methods 67:310-320.
    • (2006) J. Microbiol. Methods , vol.67 , pp. 310-320
    • Nocker, A.1    Cheung, C.-Y.2    Camper, A.K.3
  • 15
    • 85025384988 scopus 로고
    • Pyrodictium gen. nov., a new genus of submarine disc-shaped sulphur-reducing archaebacteria growing optimally at 105°C
    • Stetter KO, König H, Stackebrandt E. 1983. Pyrodictium gen. nov., a new genus of submarine disc-shaped sulphur-reducing archaebacteria growing optimally at 105°C. Syst. Appl. Microbiol. 4:535-551.
    • (1983) Syst. Appl. Microbiol. , vol.4 , pp. 535-551
    • Stetter, K.O.1    König, H.2    Stackebrandt, E.3
  • 16
    • 10644224511 scopus 로고
    • Formation of methane by bacterial extracts
    • Wolin EA, Wolin MJ, Wolfe RS. 1963. Formation of methane by bacterial extracts. J. Biol. Chem. 238:2882-2886.
    • (1963) J. Biol. Chem. , vol.238 , pp. 2882-2886
    • Wolin, E.A.1    Wolin, M.J.2    Wolfe, R.S.3
  • 17
    • 84986792443 scopus 로고
    • Early diagenesis in transitional sedimentary environments of the White Oak River Estuary, North Carolina
    • Martens CS, Goldhaber MB. 1978. Early diagenesis in transitional sedimentary environments of the White Oak River Estuary, North Carolina. Limnol. Oceanogr. 23:428-441.
    • (1978) Limnol. Oceanogr. , vol.23 , pp. 428-441
    • Martens, C.S.1    Goldhaber, M.B.2
  • 23
    • 65549146674 scopus 로고    scopus 로고
    • Discrimination of viable and dead fecal Bacteroidales bacteria by quantitative PCR with propidium monoazide
    • Bae S, Wuertz S. 2009. Discrimination of viable and dead fecal Bacteroidales bacteria by quantitative PCR with propidium monoazide. Appl. Environ. Microbiol. 75:2940-2944.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2940-2944
    • Bae, S.1    Wuertz, S.2
  • 24
    • 70149098733 scopus 로고    scopus 로고
    • Anaerobic fermentation of glycerol in Paenibacillus macerans: metabolic pathways and environmental determinants
    • Gupta A, Murarka A, Campbell P, Gonzalez R. 2009. Anaerobic fermentation of glycerol in Paenibacillus macerans: metabolic pathways and environmental determinants. Appl. Environ. Microbiol. 75:5871-5883.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5871-5883
    • Gupta, A.1    Murarka, A.2    Campbell, P.3    Gonzalez, R.4
  • 25
    • 0037672413 scopus 로고    scopus 로고
    • Protectants used in the cryopreservation of microorganisms
    • Hubálek Z. 2003. Protectants used in the cryopreservation of microorganisms. Cryobiology 46:205-229.
    • (2003) Cryobiology , vol.46 , pp. 205-229
    • Hubálek, Z.1
  • 26
    • 0028028182 scopus 로고
    • Taxonomic note: a place for DNADNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E, Goebel BM. 1994. Taxonomic note: a place for DNADNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 27
    • 84875792499 scopus 로고    scopus 로고
    • Stratified active archaeal communities in the sediments of Jiulong River estuary, China
    • Li Q, Wang F, Chen Z, Yin X, Xiao X. 2012. Stratified active archaeal communities in the sediments of Jiulong River estuary, China. Front. Microbiol. 3:1-14.
    • (2012) Front. Microbiol. , vol.3 , pp. 1-14
    • Li, Q.1    Wang, F.2    Chen, Z.3    Yin, X.4    Xiao, X.5
  • 28
    • 33746716094 scopus 로고    scopus 로고
    • Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin
    • Webster G, Parkes RJ, Cragg BA, Newberry CJ, Weightman AJ, Fry JC. 2006 Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiol. Ecol. 58:65-85.
    • (2006) FEMS Microbiol. Ecol. , vol.58 , pp. 65-85
    • Webster, G.1    Parkes, R.J.2    Cragg, B.A.3    Newberry, C.J.4    Weightman, A.J.5    Fry, J.C.6
  • 30
    • 33847298041 scopus 로고    scopus 로고
    • Enrichment and cultivation of microorganisms from sediment from the slope of the Peru trench (ODP site 1230)
    • Jørgensen BB, D'Hondt SL, Miller DJ (ed)
    • Biddle JF, House CH, Brenchley JE. 2005. Enrichment and cultivation of microorganisms from sediment from the slope of the Peru trench (ODP site 1230), p 1-19. In Jørgensen BB, D'Hondt SL, Miller DJ (ed), Proceedings of the Ocean Drilling Program, scientific results, vol 201. http://www -odp.tamu.edu/publications/201_SR/VOLUME/CHAPTERS/107.PDF.
    • (2005) Proceedings of the Ocean Drilling Program, scientific results , vol.201 , pp. 1-19
    • Biddle, J.F.1    House, C.H.2    Brenchley, J.E.3
  • 31
    • 73449146256 scopus 로고    scopus 로고
    • Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
    • Roh SW, Kim K-H, Nam Y-D, Chang H-W, Park E-J, Bae J-W. 2010. Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. ISME J. 4:1-16.
    • (2010) ISME J. , vol.4 , pp. 1-16
    • Roh, S.W.1    Kim, K.-H.2    Nam, Y.-D.3    Chang, H.-W.4    Park, E.-J.5    Bae, J.-W.6
  • 32
    • 84928602781 scopus 로고    scopus 로고
    • Response of sulphate reducing bacteria to oxygen
    • Barton LL, Hamilton WA (ed). Cambridge University Press, Cambridge, United Kingdom.
    • Sass H, Cypionka H. 2009. Response of sulphate reducing bacteria to oxygen, p 167-184. In Barton LL, Hamilton WA (ed), Sulphate-reducing bacteria: environmental and engineered systems. Cambridge University Press, Cambridge, United Kingdom.
    • (2009) Sulphate-reducing bacteria: environmental and engineered systems , pp. 167-184
    • Sass, H.1    Cypionka, H.2
  • 34
    • 79952449765 scopus 로고    scopus 로고
    • Maintenance of previously uncultured freshwater archaea from anoxic waters under laboratory conditions
    • Plasencia A, Bañeras L, Llirós M, Casamayor EO, Borrego C. 2011. Maintenance of previously uncultured freshwater archaea from anoxic waters under laboratory conditions. Antonie Van Leeuwenhoek 99:403-408.
    • (2011) Antonie Van Leeuwenhoek , vol.99 , pp. 403-408
    • Plasencia, A.1    Bañeras, L.2    Llirós, M.3    Casamayor, E.O.4    Borrego, C.5
  • 35
    • 0033760479 scopus 로고    scopus 로고
    • Quantitative analysis of smallsubunit rRNA genes in mixed microbial populations via 5'-nuclease assays
    • Suzuki MT, Taylor LT, DeLong EF. 2000. Quantitative analysis of smallsubunit rRNA genes in mixed microbial populations via 5'-nuclease assays. Appl. Environ. Microbiol. 66:4605-4616.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4605-4616
    • Suzuki, M.T.1    Taylor, L.T.2    DeLong, E.F.3
  • 36
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • Stackebrandt E, Goodfellow M (ed). Wiley, New York, NY.
    • Stahl DA, Amann R. 1991. Development and application of nucleic acid probes, p 205-248. In Stackebrandt E, Goodfellow M (ed), Nucleic acid techniques in bacterial systematics. Wiley, New York, NY.
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 37
    • 77951265777 scopus 로고    scopus 로고
    • Novel microbial diversity retrieved by autonomous robotic exploration of the world's deepest vertical phreatic sinkhole
    • Sahl JW, Fairfield N, Harris JK, Wettergreen D, Stone WC, Spear JR. 2010. Novel microbial diversity retrieved by autonomous robotic exploration of the world's deepest vertical phreatic sinkhole. Astrobiology 10:201-213.
    • (2010) Astrobiology , vol.10 , pp. 201-213
    • Sahl, J.W.1    Fairfield, N.2    Harris, J.K.3    Wettergreen, D.4    Stone, W.C.5    Spear, J.R.6


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