Imprinted genes and satellite loci are differentially methylated in bovine somatic cell nuclear transfer clones

Cellular Reprogramming

Volumn 15, Issue 5, 2013, Pages 413-424

  Shen, Chih Jie ^a   Lin, Chiao Chieh ^a   Shen, Perng Chih ^b   Cheng, Winston T K ^c   Chen, Hsiao Ling ^d   Chang, Tsung Chou ^b   Liu, Shyh Shyan ^b   Chen, Chuan Mu ^a  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b NATIONAL PINGTUNG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Taiwan)

^c TUNGHAI UNIVERSITY   (Taiwan)

^d DA YEH UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; SOMATOMEDIN B;

ANIMAL CELL; ARTICLE; CELL NUCLEUS TRANSPLANTATION; CONTROLLED STUDY; COW; CPG ISLAND; DEMETHYLATION; DNA METHYLATION; FEMALE; FIBROBLAST; GENE; GENE LOCUS; GENOME IMPRINTING; H19 GENE; HISTOPATHOLOGY; LIFESPAN; MALE; METHYLATION; NONHUMAN; OOCYTE; PRIORITY JOURNAL; RNA ISOLATION; SOMATIC CELL; VARIABLE NUMBER OF TANDEM REPEAT; X INACTIVE SPECIFIC TRANSCRIPT GENE;

ANIMALS; CATTLE; CELLS, CULTURED; CLONING, ORGANISM; DNA METHYLATION; DNA, SATELLITE; GENOMIC IMPRINTING; INSULIN-LIKE GROWTH FACTOR II; NUCLEAR TRANSFER TECHNIQUES; REAL-TIME POLYMERASE CHAIN REACTION; RNA, LONG NONCODING;

EID: 84885004614     PISSN: 21524971     EISSN: 21524998     Source Type: Journal    
DOI: 10.1089/cell.2013.0012     Document Type: Article

References (47)

1. Cezar, G.G., Bartolomei, M.S., Forsberg, E.J., et al. (2003). Genome-wide epigenetic alterations in cloned bovine fetuses. Biol. Reprod. 68, 1009-1014
2. Chen, C.M., Chen, H.L., Hsiau, T.H., et al. (2003). Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes. Am. J. Pathol. 163, 37-45
3. Chen, C.M., Shyu, M.P., Au, L.C., et al. (1994). Analysis of deletion of the integrated human papillomavirus 16 sequence in cervical cancer: A rapid multiplex polymerase chain reaction approach. J. Med. Virol. 44, 206-211
4. Chen, H.L., Huang, J.Y., Chu, T.W., et al. (2008a). Expression of VP1 protein in the milk of transgenic mice: A potential oral vaccine protects against enterovirus 71 infection. Vaccine 26, 2882-2889
5. Chen, Y.J., Wu, C.Y., Chang, C.C., et al. (2008b). Nuclear Kruppel-like factor 4 expression is associated with human skin squamous cell carcinoma progression and metastasis. Cancer Biol. Ther. 7, 777-782
6. Curchoe, C.L., Zhang, S., Yang, L., et al. (2009). Hypomethylation trends in the intergenic region of the imprinted IGF2 and H19 genes in cloned cattle. Anim. Reprod. Sci. 116, 213-225
7. Dindot, S.V., Farin, P.W., Farin, C.E., et al. (2004). Epigenetic and genomic imprinting analysis in nuclear transfer derived Bos gaurus/Bos taurus hybrid fetuses. Biol. Reprod. 71, 470-478
8. Farin, C.E., Farin, P.W., and Piedrahita, J.A. (2004). Development of fetuses from in vitro-produced and cloned bovine embryos. J. Anim. Sci. 82, E53-E62
9. Gabory, A., Ripoche, M.A., Le Digarcher, A., et al. (2009). H19 acts as a trans regulator of the imprinted gene network controlling growth in mice. Development 136, 3413-3421
10. Gao, W.L., Li, D., Xiao, Z.X., et al. (2011). Detection of global DNA methylation and paternally imprinted H19 gene methylation in preeclamptic placentas. Hypertens. Res. 34, 655-661
11. Gebert, C., Wrenzycki, C., Herrmann, D., et al. (2006). The bovine IGF2 gene is differentially methylated in oocyte and sperm DNA. Genomics 88, 222-229
12. Hendrich, B.D., Plenge, R.M., and Willard, H.F. (1997). Identification and characterization of the human XIST gene promoter: Implications for models of X chromosome inactivation. Nucleic Acids Res. 25, 2661-2671
13. Hitchins, M.P., and Moore, G.E. (2002). Genomic imprinting in fetal growth and development. Expert. Rev. Mol. Med. 4, 1-19
14. Humpherys, D., Eggan, K., Akutsu, H., et al. (2001). Epigenetic instability in ES cells and cloned mice. Science 293, 95-97
15. Hung, C.M., Yeh, C.C., Chen, H.L., et al. (2010). Porcine lactoferrin administration enhances peripheral lymphocyte proliferation and assists infectious bursal disease vaccination in native chickens. Vaccine 28, 2895-2902
16. Jones, P.A., and Takai, D. (2001). The role of DNA methylation in mammalian epigenetics. Science 293, 1068-1070
17. Kang, Y.K., Koo, D.B., Park, J.S., et al. (2001). Aberrant methylation of donor genome in cloned bovine embryos. Nat. Genet. 28, 173-177
18. Kang, Y.K., Lee, H.J., Shim, J.J., et al. (2005).Varied patterns ofDNA methylation change between different satellite regions in bovine preimplantation development. Mol. Reprod. Dev. 71, 29-35
19. Li, S., Li, Y., Du, W., et al. (2005). Aberrant gene expression in organs of bovine clones that die within two days after birth. Biol. Reprod. 72, 258-265
20. Lin, L., Li, Q., Zhang, L., et al. (2008). Aberrant epigenetic changes and gene expression in cloned cattle dying around birth. BMC Dev. Biol. 8, 14
21. Liu, J.H., Yin, S., Xiong, B., et al. (2008). Aberrant DNA methylation imprints in aborted bovine clones. Mol. Reprod. Dev. 75, 598-607
22. Long, J.E., and Cai, X. (2007). Igf-2r expression regulated by epigenetic modification and the locus of gene imprinting disrupted in cloned cattle. Gene 388, 125-134
23. Magdinier, F., Billard, L.M., Wittman, G., et al. (2000). Regional methylation of the 5¢ end CpG island of BRCA1 is associated with reduced gene expression in human somatic cells. FASEB J 14, 1585-1594
24. Mohana Kumar, B., Jin, H.F., Kim, J.G., et al. (2006). DNA methylation levels in porcine fetal fibroblasts induced by an inhibitor of methylation, 5-Azacytidine. Cell Tissue Res. 325, 445-454
25. Morgan, H.D., Santos, F., Green, K., et al. (2005). Epigenetic reprogramming in mammals. Hum. Mol. Genet. 1, R47-R58
26. Nakagawa, T., and Yamaguchi, M. (2005). Overexpression of regucalcin suppresses apoptotic cell death in cloned normal rat kidney proximal tubular epithelial NRK52E cells: Change in apoptosis-related gene expression. J. Cell. Biochem. 96, 1274-1285
27. Oishi, M., Gohma, H., Hashizume, K., et al. (2006). Early embryonic death-Associated changes in genome-wide gene expression profiles in the fetal placenta of the cow carrying somatic nuclear-derived cloned embryo. Mol. Reprod. Dev. 73, 404-409
28. Peat, J.R., and Reik, W. (2012). Incomplete methylation reprogramming in SCNT embryos. Nat. Genet. 44, 965-966
29. Sasaki, H., Ishihara, K., and Kato, R. (2000). Mechanisms of Igf2/ H19 imprinting: DNA methylation, chromatin and longdistance gene regulation. J. Biochem. 127, 711-715
30. Schrader, A.D., Iqbal, M.J., and Jones, K.L. (2003). Gene expression in cloned bovine fetal liver. Cloning Stem Cells 5, 63-69
31. Shen, C.J., Cheng, W.T., Wu, S.C., et al. (2012). Differential differences in methylation status of putative imprinted genes among cloned swine genomes. PLoS One 7, e32812
32. Spadafora, C., and Geraci, G. (1975). The subunit structure of sea urchin sperm chromatin: A kinetic approach. FEBS Lett. 57, 79-82
33. Surani, M.A., Barton, S.C., and Norris, M.L. (1986). Nuclear transplantation in the mouse: Heritable differences between parental genomes after activation of the embryonic genome. Cell 45, 127-136
34. Suteevun, T., Parnpai, R., Smith, S.L., et al. (2006). Epigenetic characteristics of cloned and in vitro-fertilized swamp buffalo (Bubalus bubalis) embryos. J. Anim. Sci. 84, 2065-2071
35. Tsai, T.C., Lin, W., Yang, S.H., et al. (2010). Granzyme G is expressed in the two-cell stage mouse embryo and is required for the maternal-zygotic transition. BMC Dev. Biol. 10, 88
36. Tung, Y.T., Chen, H.L., Lai, C.W., et al. (2011). Curcumin reduces pulmonary tumorigenesis in vascular endothelial growth factor (VEGF)-overexpressing transgenic mice. Mol. Nutr. Food Res. 55, 1036-1043
37. Wang, Y., Su, J., Wang, L., et al. (2011). The effects of 5-Aza-2¢-deoxycytidine and trichostatin A on gene expression and DNA methylation status in cloned bovine blastocysts. Cell. Reprogram. 13, 297-306
38. Weksberg, R., Shen, D.R., Fei, Y.L., et al. (1993). Disruption of insulin-like growth factor 2 imprinting in Beckwith-Wiedemann syndrome. Nat. Genet. 5, 143-150
39. Wilmut, I., Schnieke, A.E., McWhir, J., et al. (1997). Viable offspring derived from fetal and adult mammalian cells. Nature 385, 810-813
40. Wolffe, A.P., and Matzke, M.A. (1999). Epigenetics: Regulation through repression. Science 286, 481-486
41. Xue, F., Tian, X.C., Du, F., et al. (2002). Aberrant patterns of X chromosome inactivation in bovine clones. Nat. Genet. 31, 216-220
42. Yang, H., Chen, C.M., Yan, P., et al. (2003). The androgen receptor gene is preferentially hypermethylated in follicular non-Hodgkin's lymphomas. Clin. Cancer Res. 9, 4034-4042
43. Yang, L., Chavatte-Palmer, P., Kubota, C., et al. (2005). Expression of imprinted genes is aberrant in deceased newborn cloned calves and relatively normal in surviving adult clones. Mol. Reprod. Dev. 71, 431-438
44. Yen, C.C., Lin, C.Y., Chong, K.Y., et al. (2009). Lactoferrin as a natural regimen for selective decontamination of the digestive tract: Recombinant porcine lactoferrin expressed in the milk of transgenic mice protects neonates from pathogenic challenge in the gastrointestinal tract. J. Infect. Dis. 199, 590-598
45. Young, L.E., and Fairburn, H.R. (2000). Improving the safety of embryo technologies: Possible role of genomic imprinting. Theriogenology 53, 627-648
46. Zhang, S., Kubota, C., Yang, L., et al. (2004). Genomic imprinting of H19 in naturally reproduced and cloned cattle. Biol. Reprod. 71, 1540-1544
47. Zhang, Y., and Tycko, B. (1992). Monoallelic expression of the human H19 gene. Nat. Genet. 1, 40-44