Online correction of licking-induced brain motion during two-photon imaging with a tunable lens

Journal of Physiology

Volumn 591, Issue 19, 2013, Pages 4689-4698

  Chen, Jerry L ^a   Pfäffli, Oliver A ^a   Voigt, Fabian F ^a   Margolis, David J ^a   Helmchen, Fritjof ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; BRAIN MOTION; BRAIN REGION; CELL ACTIVITY; IMAGE DISPLAY; LICKING; LIMB MOVEMENT; LOCOMOTION; MALE; MOUSE; NEOCORTEX; NERVE CELL; NONHUMAN; ONLINE SYSTEM; PRIORITY JOURNAL; SOMATOSENSORY CORTEX; STEREOTYPY; TWO PHOTO IMAGING;

ANIMALS; ARTIFACTS; BEHAVIOR, ANIMAL; CALCIUM SIGNALING; IMAGE PROCESSING, COMPUTER-ASSISTED; MICE; MICE, INBRED C57BL; MICROSCOPY, FLUORESCENCE, MULTIPHOTON; MOTION; NEOCORTEX; NEURONS; OPTICAL IMAGING; REWARD;

EID: 84884983865     PISSN: 00223751     EISSN: 14697793     Source Type: Journal    
DOI: 10.1113/jphysiol.2013.259804     Document Type: Article

References (41)

1. Andermann ML, Kerlin AM & Reid RC (2010). Chronic cellular imaging of mouse visual cortex during operant behaviour and passive viewing. Front Cell Neurosci 4, 3.
2. Andermann ML, Kerlin AM, Roumis DK, Glickfeld LL & Reid RC (2011). Functional specialization of mouse higher visual cortical areas. Neuron 72, 1025-1039.
3. Bonin V, Histed MH, Yurgenson S & Reid RC (2011). Local diversity and fine-scale organization of receptive fields in mouse visual cortex. J Neurosci 31, 18506-18521.
4. Botcherby EJ, Smith CW, Kohl MM, Debarre D, Booth MJ, Juskaitis R, Paulsen O & Wilson T (2012). Aberration-free three-dimensional multiphoton imaging of neuronal activity at kHz rates. Proc Natl Acad Sci U S A 109, 2919-2924.
5. Chen JL, Carta S, Soldado-Magraner J, Schneider BL & Helmchen F (2013). Behaviour-dependent recruitment of long-range projection neurons in somatosensory cortex. Nature 499, 336-340.
6. Cheng A, Goncalves JT, Golshani P, Arisaka K & Portera-Cailliau C (2011). Simultaneous two-photon calcium imaging at different depths with spatiotemporal multiplexing. Nat Methods 8, 139-142.
7. Cole RW, Jinadasa T & Brown CM (2011). Measuring and interpreting point spread functions to determine confocal microscope resolution and ensure quality control. Nat Protocols 6, 1929-1941.
8. Dombeck DA, Graziano MS & Tank DW (2009). Functional clustering of neurons in motor cortex determined by cellular resolution imaging in awake behaving mice. J Neurosci 29, 13751-13760.
9. Dombeck DA, Khabbaz AN, Collman F, Adelman TL & Tank DW (2007). Imaging large-scale neural activity with cellular resolution in awake, mobile mice. Neuron 56, 43-57.
10. Glickfeld LL, Andermann ML, Bonin V & Reid RC (2013). Cortico-cortical projections in mouse visual cortex are functionally target specific. Nat Neurosci 16, 219-226.
11. Gobel W, Kampa BM & Helmchen F (2007). Imaging cellular network dynamics in three dimensions using fast 3D laser scanning. Nat Methods 4, 73-79.
12. Greenberg DS, Houweling AR & Kerr JN (2008). Population imaging of ongoing neuronal activity in the visual cortex of awake rats. Nat Neurosci 11, 749-751.
13. Greenberg DS & Kerr JN (2009). Automated correction of fast motion artifacts for two-photon imaging of awake animals. J Neurosci Methods 176, 1-15.
14. Grewe BF, Langer D, Kasper H, Kampa BM & Helmchen F (2010). High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision. Nat Methods 7, 399-405.
15. Grewe BF, Voigt FF, van't Hoff M & Helmchen F (2011). Fast two-layer two-photon imaging of neuronal cell populations using an electrically tunable lens. Biomed Opt Express 2, 2035-2046.
16. Grienberger C & Konnerth A (2012). Imaging calcium in neurons. Neuron 73, 862-885.
17. Harvey CD, Coen P & Tank DW (2012). Choice-specific sequences in parietal cortex during a virtual-navigation decision task. Nature 484, 62-68.
18. Helmchen F & Denk W (2005). Deep tissue two-photon microscopy. Nat Methods 2, 932-940.
19. Horikawa K, Yamada Y, Matsuda T, Kobayashi K, Hashimoto M, Matsu-ura T, Miyawaki A, Michikawa T, Mikoshiba K & Nagai T (2010). Spontaneous network activity visualized by ultrasensitive Ca(2+) indicators, yellow Cameleon-Nano. Nat Methods 7, 729-732.
20. Huber D, Gutnisky DA, Peron S, O'Connor DH, Wiegert JS, Tian L, Oertner TG, Looger LL & Svoboda K (2012). Multiple dynamic representations in the motor cortex during sensorimotor learning. Nature 484, 473-478.
21. Katona G, Kaszas A, Turi GF, Hajos N, Tamas G, Vizi ES & Rozsa B (2011). Roller Coaster Scanning reveals spontaneous triggering of dendritic spikes in CA1 interneurons. Proc Natl Acad Sci U S A 108, 2148-2153.
22. Katona G, Szalay G, Maak P, Kaszas A, Veress M, Hillier D, Chiovini B, Vizi ES, Roska B & Rozsa B (2012). Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes. Nat Methods 9, 201-208.
23. Kerlin AM, Andermann ML, Berezovskii VK & Reid RC (2010). Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex. Neuron 67, 858-871.
24. Kirkby PA, Srinivas Nadella KM & Silver RA (2010). A compact Acousto-Optic Lens for 2D and 3D femtosecond based 2-photon microscopy. Opt Express 18, 13721-13745.
25. Knopfel T (2012). Genetically encoded optical indicators for the analysis of neuronal circuits. Nat Rev Neurosci 13, 687-700.
26. Komiyama T, Sato TR, O'Connor DH, Zhang YX, Huber D, Hooks BM, Gabitto M & Svoboda K (2010). Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice. Nature 464, 1182-1186.
27. Laffray S, Pages S, Dufour H, De Koninck P, De Koninck Y & Cote D (2011). Adaptive movement compensation for in vivo imaging of fast cellular dynamics within a moving tissue. PLoS One 6, e19928.
28. Langer D, van't Hoff M, Keller AJ, Nagaraja C, Pfaffli OA, Goldi M, Kasper H & Helmchen F (2013). HelioScan: A software framework for controlling in vivo microscopy setups with high hardware flexibility, functional diversity and extendibility. J Neurosci Methods 215, 38-52.
29. Margolis DJ, Lutcke H, Schulz K, Haiss F, Weber B, Kugler S, Hasan MT & Helmchen F (2012). Reorganization of cortical population activity imaged throughout long-term sensory deprivation. Nat Neurosci 15, 1539-1546.
30. Mayrhofer JM, Skreb V, von der Behrens W, Musall S, Weber B & Haiss F (2013). Novel two-alternative forced choice paradigm for bilateral vibrotactile whisker frequency discrimination in head-fixed mice and rats. J Neurophysiol 109, 273-284.
31. Nimmerjahn A, Kirchhoff F & Helmchen F (2005). Resting microglial cells are highly dynamic surveillants of brain parenchyma in vivo. Science 308, 1314-1318.
32. Nimmerjahn A, Mukamel EA & Schnitzer MJ (2009). Motor behaviour activates Bergmann glial networks. Neuron 62, 400-412.
33. O'Connor DH, Peron SP, Huber D & Svoboda K (2010). Neural activity in barrel cortex underlying vibrissa-based object localization in mice. Neuron 67, 1048-1061.
34. Paukert M & Bergles DE (2012). Reduction of motion artifacts during in vivo two-photon imaging of brain through heartbeat triggered scanning. J Physiol 590, 2955-2963.
35. Petreanu L, Gutnisky DA, Huber D, Xu NL, O'Connor DH, Tian L, Looger L & Svoboda K (2012). Activity in motor-sensory projections reveals distributed coding in somatosensation. Nature 489, 299-303.
36. Roe AW (2007). Long-term optical imaging of intrinsic signals in anaesthetized and awake monkeys. Appl Opt 46, 1872-1880.
37. Thevenaz P, Ruttimann UE & Unser M (1998). A pyramid approach to subpixel registration based on intensity. IEEE Trans Image Process 7, 27-41.
38. Vogelstein JT, Packer AM, Machado TA, Sippy T, Babadi B, Yuste R & Paninski L (2010). Fast nonnegative deconvolution for spike train inference from population calcium imaging. J Neurophysiol 104, 3691-3704.
39. Vogelstein JT, Watson BO, Packer AM, Yuste R, Jedynak B & Paninski L (2009). Spike inference from calcium imaging using sequential Monte Carlo methods. Biophys J 97, 636-655.
40. Xu NL, Harnett MT, Williams SR, Huber D, O'Connor DH, Svoboda K & Magee JC (2012). Nonlinear dendritic integration of sensory and motor input during an active sensing task. Nature 492, 247-251.
41. 2+ imaging. Nat Methods 3, 377-383.