메뉴 건너뛰기




Volumn 105, Issue 5, 2013, Pages 1164-1173

Development and characterization of simple sequence repeats for Bipolaris sorokiniana and cross transferability to related species

Author keywords

Biofuels; Cochliobolus sativus; Genetic variability; Microsatellites; Resistant cultivars; Spot blotch; Switchgrass

Indexed keywords

CULTIVAR; DATA SET; DEVELOPMENTAL BIOLOGY; DISEASE RESISTANCE; FUNGAL DISEASE; FUNGUS; GENETIC DIFFERENTIATION; GENETIC MARKER; GENOMICS; GRASS; HOST-PATHOGEN INTERACTION; RICE;

EID: 84884948126     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/12-210     Document Type: Article
Times cited : (11)

References (33)
  • 1
    • 33846005112 scopus 로고    scopus 로고
    • Automated binning of microsatellite alleles: problems and solutions
    • doi:10.1111/j.1471-8286.2006.01560.x
    • Amos W, Hoffman JI, Frodsham A, Zhang L, Best S, Hill AVS. 2007. Automated binning of microsatellite alleles: problems and solutions. Mol Ecol Notes 7:10-14, doi:10.1111/j.1471-8286.2006.01560.x
    • (2007) Mol Ecol Notes , vol.7 , pp. 10-14
    • Amos, W.1    Hoffman, J.I.2    Frodsham, A.3    Zhang, L.4    Best, S.5    Hill, A.V.S.6
  • 2
    • 84900222553 scopus 로고    scopus 로고
    • Improvement of switchgrass as a bioenergy crop
    • In: Vermerris W, ed. Genetic improvement of bioenergy crops. New York: Springer
    • Bouton J. 2008. Improvement of switchgrass as a bioenergy crop. In: Vermerris W, ed. Genetic improvement of bioenergy crops. New York: Springer. p 295-308.
    • (2008) , pp. 295-308
    • Bouton, J.1
  • 3
    • 0027746929 scopus 로고
    • General concepts for PCR primer design
    • doi:10.1101/gr.3.3.S30
    • Dieffenbach CW, Lowe TM, Dveksler GS. 1993. General concepts for PCR primer design. Genome Res 3:S30- S37, doi:10.1101/gr.3.3.S30
    • (1993) Genome Res , vol.3
    • Dieffenbach, C.W.1    Lowe, T.M.2    Dveksler, G.S.3
  • 5
    • 0042170909 scopus 로고    scopus 로고
    • Fungal databases, systematic mycology and microbiology laboratory, ARS, USDA
    • Available from:. Accessed 9 Apr 2012
    • Farr DF, Rossman AY. 2012. Fungal databases, systematic mycology and microbiology laboratory, ARS, USDA. Available from: http://nt.ars-grin.gov/fungaldatabases/. Accessed 9 Apr 2012.
    • (2012)
    • Farr, D.F.1    Rossman, A.Y.2
  • 6
    • 34250867292 scopus 로고    scopus 로고
    • Virulence diversity in the population of Bipolaris sorokiniana
    • doi:10.1094/PDIS-91-7-0814
    • Ghazvini H, Tekauz A. 2007. Virulence diversity in the population of Bipolaris sorokiniana. Plant Dis 91:814- 821, doi:10.1094/PDIS-91-7-0814
    • (2007) Plant Dis , vol.91
    • Ghazvini, H.1    Tekauz, A.2
  • 7
    • 74549125386 scopus 로고    scopus 로고
    • SeaView Version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • doi:10.1093/molbev/msp259
    • Gouy M, Guindon S, Gaascuel O. 2010. SeaView Version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27:221-224, doi:10.1093/molbev/msp259
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gaascuel, O.3
  • 8
    • 0038060807 scopus 로고    scopus 로고
    • Microsatellites in plants: a new class of molecular markers
    • Gupta PK, Balyan HS, Sharma PC, Ramesh B. 1996. Microsatellites in plants: a new class of molecular markers. Curr Sci 70:45-54.
    • (1996) Curr Sci , vol.70 , pp. 45-54
    • Gupta, P.K.1    Balyan, H.S.2    Sharma, P.C.3    Ramesh, B.4
  • 9
    • 84884929847 scopus 로고    scopus 로고
    • Development and characterization of 16 microsatellite loci for Geosmithia morbida, the causal agent of thousand canker disease in black walnut (Juglans nigra)
    • doi:10.1007/s12686-011-9526-0
    • Hadziabdic D, Wadl PA, Vito LM, Boggess SL, Scheffler BE, Windham MT, Trigiano RN. 2012. Development and characterization of 16 microsatellite loci for Geosmithia morbida, the causal agent of thousand canker disease in black walnut (Juglans nigra). Conserv Genet Resour 4: 287-289, doi:10.1007/s12686-011-9526-0
    • (2012) Conserv Genet Resour , vol.4 , pp. 287-289
    • Hadziabdic, D.1    Wadl, P.A.2    Vito, L.M.3    Boggess, S.L.4    Scheffler, B.E.5    Windham, M.T.6    Trigiano, R.N.7
  • 10
    • 0032873516 scopus 로고    scopus 로고
    • Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites
    • 504-507
    • Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC. 1999. Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTechniques 27:500-502, 504-507.
    • (1999) BioTechniques , vol.27 , pp. 500-502
    • Hamilton, M.B.1    Pincus, E.L.2    Di Fiore, A.3    Fleischer, R.C.4
  • 11
    • 14544279926 scopus 로고    scopus 로고
    • Survey of simple sequence repeats in completed fungal genomes
    • doi:10.1093/molbev/msi057
    • Karaoglu H, Lee CMY, Meyer W. 2005. Survey of simple sequence repeats in completed fungal genomes. Mol Biol Evol 22:639-649, doi:10.1093/molbev/msi057
    • (2005) Mol Biol Evol , vol.22 , pp. 639-649
    • Karaoglu, H.1    Lee, C.M.Y.2    Meyer, W.3
  • 12
    • 0242383895 scopus 로고    scopus 로고
    • The development of simple sequence repeat markers for Magnaporthe grisea and their integration into an established genetic linkage map
    • doi:10.1016/j.fgb.2003.08.001
    • Kaye C, Milazzo J, Rozenfeld S, Lebrun M-H, Tharreau D. 2003. The development of simple sequence repeat markers for Magnaporthe grisea and their integration into an established genetic linkage map. Fungal Genet Biol 40:207-214, doi:10.1016/j.fgb.2003.08.001
    • (2003) Fungal Genet Biol , vol.40 , pp. 207-214
    • Kaye, C.1    Milazzo, J.2    Rozenfeld, S.3    Lebrun, M.-H.4    Tharreau, D.5
  • 13
    • 0036312017 scopus 로고    scopus 로고
    • Bipolaris sorokiniana, a cereal pathogen of global concern: cytological and molecular approaches towards better control
    • doi:10.1046/ j.1364-3703.2002.00120.x
    • Kumar J, Schäfer P, Hückelhoven R, Langen G, Baltruschat H, Stein E, Nagarajan S, Kogel K-H. 2002. Bipolaris sorokiniana, a cereal pathogen of global concern: cytological and molecular approaches towards better control. Mol Plant Pathol 3:185-195, doi:10.1046/ j.1364-3703.2002.00120.x
    • (2002) Mol Plant Pathol , vol.3 , pp. 185-195
    • Kumar, J.1    Schäfer, P.2    Hückelhoven, R.3    Langen, G.4    Baltruschat, H.5    Stein, E.6    Nagarajan, S.7    Kogel, K.-H.8
  • 14
    • 84863207079 scopus 로고    scopus 로고
    • Structure of the Cochliobolus sativus population variability
    • doi:10.1111/ j.1365-3059.2011.02547.x
    • Leisova-Svobodova L, Minarikova V, Kucera L, Pereyra SA. 2012. Structure of the Cochliobolus sativus population variability. Plant Pathol 61:709-718, doi:10.1111/ j.1365-3059.2011.02547.x
    • (2012) Plant Pathol , vol.61 , pp. 709-718
    • Leisova-Svobodova, L.1    Minarikova, V.2    Kucera, L.3    Pereyra, S.A.4
  • 16
    • 27744522603 scopus 로고    scopus 로고
    • The use of RAPD to characterize Bipolaris sorokiniana isolates
    • Muller MVG, Germani JC, van der Sand ST. 2005. The use of RAPD to characterize Bipolaris sorokiniana isolates. Genet Mol Res 4:642-652.
    • (2005) Genet Mol Res , vol.4 , pp. 642-652
    • Muller, M.V.G.1    Germani, J.C.2    van der Sand, S.T.3
  • 18
    • 68849101637 scopus 로고    scopus 로고
    • Morphology, physiology and virulence of Bipolaris sorokiniana isolates
    • doi:10.1007/s00284-009-9429-4
    • Poloni A, Pessi IS, Frazzon APG, van der Sand ST. 2009. Morphology, physiology and virulence of Bipolaris sorokiniana isolates. Curr Microbiol 59:267-273, doi:10.1007/s00284-009-9429-4
    • (2009) Curr Microbiol , vol.59 , pp. 267-273
    • Poloni, A.1    Pessi, I.S.2    Frazzon, A.P.G.3    van der Sand, S.T.4
  • 19
    • 0001025251 scopus 로고
    • Microsatellite and kinship
    • doi:10.1016/0169-5347(93)90256-O
    • Queller DC, Strassmann JE, Hughes CR. 1993. Microsatellite and kinship. Trends Ecol Evol 8:285-288, doi:10.1016/0169-5347(93)90256-O
    • (1993) Trends Ecol Evol , vol.8 , pp. 285-288
    • Queller, D.C.1    Strassmann, J.E.2    Hughes, C.R.3
  • 20
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and biologist programmers
    • In: Krawetz S, Misener S, eds. Methods in molecular biology 132: bioinformatics methods and protocols. Totowa, New Jersey: Humana Press
    • Rozen S, Skaletsky HJ. 2000. Primer3 on the WWW for general users and biologist programmers. In: Krawetz S, Misener S, eds. Methods in molecular biology 132: bioinformatics methods and protocols. Totowa, New Jersey: Humana Press. p 365-386.
    • (2000) , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 21
    • 0003903343 scopus 로고    scopus 로고
    • Molecular cloning a laboratory manual. 3rd ed
    • Cold Spring Harbor. New York: Cold Spring Harbor Laboratory Press
    • Sambrook J, Russell DW. 2001. Molecular cloning a laboratory manual. 3rd ed. Cold Spring Harbor. New York: Cold Spring Harbor Laboratory Press.
    • (2001)
    • Sambrook, J.1    Russell, D.W.2
  • 22
    • 2542492322 scopus 로고    scopus 로고
    • Development and characterization of microsatellite markers for the fungus Ceratocystis fimbriata
    • doi:10.1111/j.1471-8286.2004.00621.x
    • Steimel J, Engelbrecht CJB, Harrington TC. 2004. Development and characterization of microsatellite markers for the fungus Ceratocystis fimbriata. Mol Ecol Notes 4:215- 218, doi:10.1111/j.1471-8286.2004.00621.x
    • (2004) Mol Ecol Notes , vol.4
    • Steimel, J.1    Engelbrecht, C.J.B.2    Harrington, T.C.3
  • 23
    • 79952616918 scopus 로고    scopus 로고
    • Identifying disease threats and management practices for bio-energy crops
    • doi:10.1016/j.cosust.2010.10.008
    • Stewart A, Cromey M. 2011. Identifying disease threats and management practices for bio-energy crops. Curr Opin Environ Sustain 3:75-80, doi:10.1016/j.cosust.2010.10.008
    • (2011) Curr Opin Environ Sustain , vol.3 , pp. 75-80
    • Stewart, A.1    Cromey, M.2
  • 24
    • 84884951025 scopus 로고    scopus 로고
    • Imperfect SSR Finder. Available from:Version 1.0. Kimberly, Idaho: USDA-ARS-NWISRL
    • Stieneke DL, Eujayl IA. 2007. Imperfect SSR Finder. Available from: http://ssr.nwisrl.ars.usda.gov/. Version 1.0. Kimberly, Idaho: USDA-ARS-NWISRL.
    • (2007)
    • Stieneke, D.L.1    Eujayl, I.A.2
  • 25
    • 0030816904 scopus 로고    scopus 로고
    • Pathotypes of Cochliobolus sativus on barley in North Dakota
    • doi:10.1094/PDIS.1997.81.11.1275
    • Valjavec-Gratian M, Steffenson BJ. 1997. Pathotypes of Cochliobolus sativus on barley in North Dakota. Plant Dis 81:1275-1278, doi:10.1094/PDIS.1997.81.11.1275
    • (1997) Plant Dis , vol.81 , pp. 1275-1278
    • Valjavec-Gratian, M.1    Steffenson, B.J.2
  • 26
    • 84884964484 scopus 로고    scopus 로고
    • First report of spot blotch and common root rot caused by Bipolaris sorokiniana on switchgrass in Tennessee
    • doi:10.1094/PDIS-10-10-0774
    • Vu AL, Dee MM, Gwinn KD, Ownley BH. 2011a. First report of spot blotch and common root rot caused by Bipolaris sorokiniana on switchgrass in Tennessee. Plant Dis 95: 1191, doi:10.1094/PDIS-10-10-0774
    • (2011) Plant Dis , vol.95 , pp. 1191
    • Vu, A.L.1    Dee, M.M.2    Gwinn, K.D.3    Ownley, B.H.4
  • 27
    • 84884964484 scopus 로고    scopus 로고
    • First report of leaf spot caused by Bipolaris spicifera on switchgrass in the United States
    • doi:10.1094/PDIS-12-10-0880
    • Vu AL, Dee MM, Gualandi RJ, Huff S, Zale J, Gwinn KD, Ownley BH. 2011b. First report of leaf spot caused by Bipolaris spicifera on switchgrass in the United States. Plant Dis 95:1195, doi:10.1094/PDIS-12-10-0880
    • (2011) Plant Dis , vol.95 , pp. 1195
    • Vu, A.L.1    Dee, M.M.2    Gualandi, R.J.3    Huff, S.4    Zale, J.5    Gwinn, K.D.6    Ownley, B.H.7
  • 28
  • 30
    • 84884925078 scopus 로고    scopus 로고
    • First report of leaf spot caused by Bipolaris oryzae on switchgrass in New York
    • doi:10.1094/PDIS-03-11-0231
    • Waxman KD, Bergstrom GC. 2011. First report of leaf spot caused by Bipolaris oryzae on switchgrass in New York. Plant Dis 95:1192, doi:10.1094/PDIS-03-11-0231
    • (2011) Plant Dis , vol.95 , pp. 1192
    • Waxman, K.D.1    Bergstrom, G.C.2
  • 31
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press
    • White TJ, Bruns TD, Lee SB, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315-322.
    • (1990) , pp. 315-322
    • White, T.J.1    Bruns, T.D.2    Lee, S.B.3    Taylor, J.W.4
  • 32
    • 9944228491 scopus 로고
    • Helminthosporium spot blotch of switchgrass in Pennsylvania
    • Zeiders KE. 1984. Helminthosporium spot blotch of switchgrass in Pennsylvania. Plant Dis 68:120-122.
    • (1984) Plant Dis , vol.68 , pp. 120-122
    • Zeiders, K.E.1
  • 33
    • 0035011555 scopus 로고    scopus 로고
    • Virulence and molecular diversity in Cochliobolus sativus
    • doi:10.1094/PHYTO.2001.91.5.469
    • Zhong S, Steffenson BJ. 2001. Virulence and molecular diversity in Cochliobolus sativus. Phytopathology 91: 469-476, doi:10.1094/PHYTO.2001.91.5.469
    • (2001) Phytopathology , vol.91 , pp. 469-476
    • Zhong, S.1    Steffenson, B.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.