Blockface histology with optical coherence tomography: A comparison with Nissl staining

NeuroImage

Volumn 84, Issue , 2014, Pages 524-533

  Magnain, Caroline ^a   Augustinack, Jean C ^a   Reuter, Martin ^a,b   Wachinger, Christian ^a,b   Frosch, Matthew P ^a   Ragan, Timothy ^c   Akkin, Taner ^d   Wedeen, Van J ^a   Boas, David A ^a   Fischl, Bruce ^a,b  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c TissueVision Inc   (United States)

^d University of Minnesota   (United States)

Author keywords

Cytoarchitecture; Histology; OCT; Registration

Indexed keywords

ACCURACY; ADULT; AGED; ARTICLE; CYTOARCHITECTURE; EX VIVO STUDY; FEMALE; HISTOLOGY; HUMAN; HUMAN TISSUE; INTERMETHOD COMPARISON; MALE; NEOCORTEX; NISSL STAINING; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RELIABILITY; SPECTRAL DOMAIN OPTICAL COHERENCE TOMOGRAPHY; TEMPORAL CORTEX; TISSUE PREPARATION; BRAIN; BRAIN LEVEL; CHEMISTRY; COMPARATIVE STUDY; COMPUTER ASSISTED DIAGNOSIS; CYTOLOGY; IMAGE ENHANCEMENT; IMAGE SUBTRACTION; MIDDLE AGED; NERVE CELL; OPTICAL COHERENCE TOMOGRAPHY; PROCEDURES; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; STAINING; VERY ELDERLY;

ANILINE DERIVATIVE;

AGED; AGED, 80 AND OVER; ANILINE COMPOUNDS; BRAIN; BRAIN CHEMISTRY; FEMALE; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MALE; MIDDLE AGED; NEURONS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; STAINING AND LABELING; SUBTRACTION TECHNIQUE; TOMOGRAPHY, OPTICAL COHERENCE;

EID: 84884941849     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.08.072     Document Type: Article

References (40)

1. Amunts K., Zilles K. Advances in cytoarchitectonic mapping of the human cerebral cortex. Neuroimaging Clin. N. Am. 2001, 11(2):151-169.
2. Amunts K., Schleicher A., Bürgel U., Mohlberg H., Uylings H.B.M., Zilles K. Broca's region revisited: cytoarchitecture and intersubject variability. J. Comp. Neurol. 1999, 412(2):319-341. (Sep.).
3. Amunts K., Lepage C., Borgeat L., Mohlberg H., Dickscheid T., Rousseau M.-E., Bludau S., Bazin P.-L., Lewis L.B., Oros-Peusquens A.M., Shah N.J., Lippert T., Zilles K., Evans A.C. BigBrain: an ultrahigh-resolution 3D human brain model. Science 2013, 340(6139):1472-1475. (Jun.).
4. Assayag O., Grieve K., Devaux B., Harms F., Pallud J., Chretien F., Boccara C., Varlet P. Imaging of non-tumorous and tumorous human brain tissues with full-field optical coherence tomography. NeuroImage Clin. 2013, 2:549-557. (Jan.).
5. Augustinack J.C., van der Kouwe A.J.W., Blackwell M.L., Salat D.H., Wiggins C.J., Frosch M.P., Wiggins G.C., Potthast A., Wald L.L., Fischl B.R. Detection of entorhinal layer II using 7Tesla magnetic resonance imaging. Ann. Neurol. 2005, 57:489-494. (Apr.).
6. Augustinack J.C., Helmer K., Huber K.E., Kakunoori S., Zöllei L., Fischl B. Direct visualization of the perforant pathway in the human brain with ex vivo diffusion tensor imaging. Front. Hum. Neurosci. 2010, 4(42):42. (Jan.).
7. Augustinack J.C., Huber K.E., Stevens A., Roy M., Frosch M.P., van der Kouwe A.J.W., Wald L.L., Leemput K.V., McKee A.C., Fischl B. Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. NeuroImage 2013, 64:32-42.
8. Ben Arous J., Binding J., Leger J.-F., Casado M., Topilko P., Gigan S., Boccara A.-C., Bourdieu L. Single myelin fiber imaging in living rodents without labeling by deep optical coherence microscopy. J. Biomed. Opt. 2011, 16(11):116012. (Nov.).
9. Bö L., Geurts J. Magnetic resonance imaging as a tool to examine the neuropathology of multiple sclerosis. Neuropathol. Appl. Neurobiol. 2004, 30:106-117.
10. Caspers J., Zilles K., Eickhoff S.B., Schleicher A., Mohlberg H., Amunts K. Cytoarchitectonical analysis and probabilistic mapping of two extrastriate areas of the human posterior fusiform gyrus. Brain Struct. Funct. 2013, 218(2):511-526.
11. Ceritoglu C., Wang L., Selemon L.D., Csernansky J.G., Miller M.I., Ratnanather J.T. Large deformation diffeomorphic metric mapping registration of reconstructed 3D histological section images and in vivo MR images. Front. Hum. Neurosci. 2010, 4(43). (Jan.).
12. Chung K., Wallace J., Kim S.-Y., Kalyanasundaram S., Andalman A.S., Davidson T.J., Mirzabekov J.J., Zalocusky K.A., Mattis J., Denisin A.K., Pak S., Bernstein H., Ramakrishnan C., Grosenick L., Gradinaru V., Deisseroth K. Structural and molecular interrogation of intact biological systems. Nature 2013, 497(7449):332-337.
13. Dale A.M., Fischl B.R., Sereno M.I. Cortical surface-based analysis: I. Segmentation and surface reconstruction. NeuroImage 1999, 9(2):179-194.
14. Denk W., Strickler J.H., Webb W.W. 2-Photon laser scanning fluorescence microscopy. Science 1990, 248(4951):73-76.
15. Eickhoff S., Walters N.B., Schleicher A., Kril J., Egan G.F., Zilles K., Watson J.D.G., Amunts K. High-resolution MRI reflects myeloarchitecture and cytoarchitecture of human cerebral cortex. Hum. Brain Mapp. 2005, 24(3):206-215. (Mar.).
16. Fercher A.F., Hitzenberger C.K., Kamp G., El-Zaiat S.Y. Measurement of intraocular distances by backscattering spectral interferometry. Opt. Commun. 1995, 117(1-2):43-48.
17. Fischl B.R., Sereno M.I., Dale A.M. Cortical surface-based analysis: II: inflation, flattening, and a surface-based coordinate system. NeuroImage 1999, 9(2):179-194.
18. Fischl B., Rajendran N., Busa E., Augustinack J., Hinds O., Yeo B.T., Mohlberg H., Amunts K., Zilles K. Cortical folding patterns and predicting cytoarchitecture. Cereb. Cortex 2008, 18(8):1973-1980.
19. Fischl B.R., Stevens A., Rajendran N., Yeo B.T.T., Greve D.N., Van Leemput K., Polimeni J.R., Kakunoori S., Buckner R.L., Pacheco J.L., Salat D.H., Melcher J.R., Frosch M.P., Hyman B.T., Grant P.E., Rosen B.R., van der Kouwe A.J.W., Wiggins G.C., Wald L.L., Augustinack J.C. Predicting the location of entorhinal cortex from MRI. NeuroImage 2009, 47(1):8-17. (Aug.).
20. Geyer S., Weiss M., Reimann K., Lohmann G., Turner R. Microstructural parcellation of the human cerebral cortex - from Brodmann's post-mortem map to in vivo mapping with high-field magnetic resonance imaging. Front. Hum. Neurosci. 2011, 5(February):19. (Jan.).
21. Gilboa G., Sochen N., Zeevi Y.Y. Texture preserving variational denoising using an adaptive fidelity term. Proc. VLsM. 2003, vol. 3.
22. Helmchen F., Denk W. Deep tissue two-photon microscopy. Nat. Methods 2005, 2(12):932-940.
23. Hertzmann A., Jacobs C.E., Oliver N., Curless B., Salesin D.H. Image analogies. SIGGRAPH. No. 2001, 327-340. (August).
24. Huang D., Swanson E.A., Lin C.P., Schuman J.S., Stinson W.G., Chang W., Hee M.R., Flotte T., Gregory K., Puliafito C.A., Fujimoto J.G. Optical coherence tomography. Science 1991, 254:1178-1181.
25. Jafri M.S., Farhang S., Tang R.S., Desai N., Fishman P.S., Rohwer R.G., Tang C.-M., Schmitt J.M. Optical coherence tomography in the diagnosis and treatment of neurological disorders. J. Biomed. Opt. 2013, 10(5):051603.
26. Jones S.E., Buchbinder B.R., Aharon I. Three-dimensional mapping of cortical thickness using Laplace's equation. Hum. Brain Mapp. 2000, 11:12-32.
27. Kluver H., Barrera E. A method for the combined staining of cells and fibers in the nervous system. J. Neuropathol. Exp. Neurol. 1953, 12(4):400-403.
28. Nagara H., Inoue T., Koga T., Kitaguchi T., Tateishi J., Goto I. Formalin fixed brains are useful for magnetic resonance imaging (MRI) study. J. Neurol. Sci. 1987, 81(1):67-77. (Oct.).
29. Preibisch S., Saalfeld S., Tomancak P. Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinformatics 2009, 25(11):1463-1465. (Jun.).
30. Ragan T., Kadiri L.R., Venkataraju K.U., Bahlmann K., Sutin J., Taranda J., Arganda-Carreras I., Kim Y., Seung H.S., Osten P. Serial two-photon tomography for automated ex vivo mouse brain imaging. Nat. Methods 2012, 9(3):255-258. (Mar.).
31. Reuter M., Rosas H.D., Fischl B. Highly accurate inverse consistent registration: a robust approach. NeuroImage 2010, 53(4):1181-1196. (Dec.).
32. Reuter M., Sand P., Huber K.E., Nguyen K., Saygin Z., Rosas H.D., Augustinack J.C., Fischl B.R. Registration of Histology and MRI using Blockface as Intermediate Space 2012, Human Brain Mapping, Beijing.
33. Rudin L.I., Osher S., Fatemi E. Nonlinear total variation based noise removal algorithms. Physica D 1992, 60(1-4):259-268.
34. Schleicher A., Amunts K., Geyer S., Morosan P., Zilles K. Observer-independent method for microstructural parcellation of cerebral cortex: a quantitative approach to cytoarchitectonics. NeuroImage 1999, 9(1):165-177. (Jan.).
35. Srinivasan V.J., Radhakrishnan H., Jiang J.Y., Barry S., Cable A.E. Optical coherence microscopy for deep tissue imaging of the cerebral cortex with intrinsic contrast. Opt. Express 2012, 20(3):2220-2239. (Jan.).
36. Wachinger C., Navab N. Entropy and Laplacian images: structural representations for multi-modal registration. Med. Image Anal. Jan. 2012, 16(1):1-17.
37. Wang H., Black A.J., Zhu J., Stigen T.W., Al-Qaisi M.K., Netoff T.I., Abosch A., Akkin T. Reconstructing micrometer-scale fiber pathways in the brain: multi-contrast optical coherence tomography based tractography. NeuroImage 2011, 58(4):984-992. (Jul.).
38. Wilt B.A., Burns L.D., Ho E.T.W., Ghosh K.K., Mukamel E.A., Schnitzer M.J. Advances in light microscopy for neuroscience. Annu. Rev. Neurosci. 2009, 32:435-506.
39. Yaqoob Z., Wu J., Yang C. Spectral domain optical coherence tomography: a better OCT imaging strategy. Biotechniques 2005, 39(6 Suppl.):S6-S13. (Dec.).
40. Zilles K., Schleicher A., Palomero-Gallagher N., Amunts K. Quantitative analysis of cyto-and receptor architecture of the human brain. Brain Mapping: The Methods 2 2002, 573-602. Elsevier, Amsterdam. J. Mozziotta, A. Toga (Eds.).