Sequence variation in 3′UTR region of crtRB1 gene and its effect on β-carotene accumulation in maize kernel

Journal of Plant Biochemistry and Biotechnology

Volumn 22, Issue 4, 2013, Pages 401-408

  Vignesh, M ^a   Nepolean, T ^a   Hossain, F ^a   Singh, A K ^a   Gupta, H S ^a  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

Author keywords

carotene; 3 UTR; Biofortification; crtRB1; InDels; Maize; SNP

Indexed keywords

EID: 84884911274     PISSN: 09717811     EISSN: 09741275     Source Type: Journal    
DOI: 10.1007/s13562-012-0168-4     Document Type: Article

References (31)

1. Belo A, Zheng P, Luck S, Shen B, Meyer DJ, Li B, Tingey S, Rafalski A (2008) Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize. Mol Genet Genomics 279: 1-10.
2. Black RE, Allen LH, Bhutta ZA, Caulfield LE, de Onis M, Ezzati M, Mathers C, Rivera J, Maternal Child Under nutrition Study Group (2008) Maternal and child under nutrition: global and regional exposures and health consequences. Lancet 371: 243-260.
3. Chen W, Wang S, Ma Y, Zhou Y, Liu H, Strnad P, Kraemer FB, Krauss RM, Liu J (2008) Analysis of polymorphisms in the 3′ untranslated region of the LDL receptor gene and their effect on plasma cholesterol levels and drug response. Int J Mol Med 21: 345-353.
4. Copeland PR, Fletcher JE, Carlson BA, Hatfield DL, Driscoll DM (2000) A novel RNA binding protein, SBP2, is required for the translation of mammalian selenoprotein mRNAs. EMBO J 19: 306-314.
5. Gehring NH, Frede U, Neu-Yilik G, Hundsdoerfer P, Vetter B, Hentze MW, Kulozik AE (2001) Increased efficiency of mRNA 3′ end formation: a new genetic mechanism contributing to hereditary thrombophilia. Nat Genet 28: 389-392.
6. Guo L, Allen EM, Miller WA (2001) Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA. Mol Cell 7: 1103-1109.
7. Harjes EC, Rocheford RT, Ling B, Brutnell PT, Kandianis BC, Sowinski GS, Stapleton EA, Vallabhaneni R, Williams M, Wurtzel TE, Yan J, Buckler SE (2008) Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science 319: 330-333.
8. Kurilich A, Juvik J (1999) Quantification of carotenoid and tocopherol antioxidants in Zea mays. J Agric Food Chem 47: 1948-1955.
9. Lestari P, Lee G, Ham TH, Reflinur WMO, Piao R, Jiang W, Chu SH, Lee J, Koh HJ (2011) Single nucleotide polymorphisms and haplotype diversity in rice sucrose synthase 3. J Hered 102: 735-746.
10. Mazumder B, Seshadri V, Fox PL (2003) Translational control by the 3′-UTR: the ends specify the means. Trends Biochem Sci 28: 91-98.
11. Menkir A, Liu W, White WS, Maziya-Dixon B, Rocheford T (2008) Carotenoid diversity in tropical-adapted yellow maize inbred lines. Food Chem 109: 521-529.
12. Monna L, Ohta R, Masuda H, Koike A, Minobe Y (2006) Genome wide searching of single nucleotide polymorphism among eight distantly and closely related rice cultivars (Oryza sativa L.) and wild accession (Oryza rufipogon Ggiff.). DNA Res 13: 43-51.
13. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
14. Pfeiffer WH, McClafferty B (2007) HarvestPlus: breeding crops for better nutrition. Crop Sci 47: S88-S105.
15. Pham AT, Lee JD, Shannon JD, Bilyeu KD (2011) A novel FAD2-1 A allele in a soybean plant introduction offers an alternate means to produce soybean seed oil with 85 % oleic acid content. Theor Appl Genet 123: 793-802.
16. Piecyk M, Wax S, Beck ARP, Kedersha N, Gupta M, Maritim B, Chen S, Gueydan C, Kruys V, Streuli M, Anderson P (2000) TIA-1 is a translational silencer that selectively regulates the expression of TNF-α. EMBO J 19: 4154-4163.
17. Pizzuti A, Argiolas A, Paola RD, Baratta R, Rauseo A, Bozzali M, Vigneri R, Dallapiccola B, Trischitta V, Frittitta L (2002) An ATG repeat in the 30-untranslated region of the human resistin gene is associated with a decreased risk of insulin resistance. J Clin Endocrinol Metab 87: 4403-4406.
18. Quackenbush FW (1963) Corn carotenoids: effects of temperature and moisture on losses during storage. Cereal Chem 40: 266-269.
19. Rafalski A (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5: 94-100.
20. Rice AI, West KP, Black RE (2004) Vitamin a deficiency. In Comparative quantification of health risks, Vol. 1, pp 211-256. (http://www. who. int/publications).
21. Shaw G, Kamen R (1986) A conserved AU sequence from the 30 untranslated region of GM-CSF mRNA mediates selective mRNA degradation. Cell 46: 659-667.
22. Shen R, Fan JB, Campbell D, Chang W, Chen J, Doucet D, Yeakley J, Bibikova M, Garcia EW, McBride C, Steemers F, Garcia F, Kermani BG, Gunderson K, Olphant A (2005) High-throughput SNP genotyping on universal bead arrays. Mutat Res 573: 70-82.
23. Singh A, Singh PK, Singh R, Pandit A, Mahato AK, Gupta DK, Tyagi K, Singh AK, Singh NK, Sharma TR (2010) SNP haplotypes of the BADH1 gene and their association with aroma in rice (Oryza sativa L.). Mol Breed 26: 325-338.
24. Tsai FJ, Linc CC, Lu FH, Chen HY, Chen WC (2002) Urokinase gene 30-UTR T/C polymorphism is associated with urolithiasis. Urology 59: 458-461.
25. Vallabhaneni R, Gallagher CE, Licciardello N, Cuttriss AJ, Quinlan RF, Wurtzel ET (2009) Metabolite sorting of a germplasm collection reveals the hydroxylase3 locus as a new target for maize provitamin A biofortification. Plant Physiol 151: 1635-1645.
26. Vignesh M, Hossain F, Nepolean T, Saha S, Agrawal PK, Guleria SK, Prasanna BM, Gupta HS (2012) Genetic variability for kernel β-carotene and utilization of crtRB1 3′TE gene for biofortification in maize (Zea mays L.) Indian. J Genet 72: 189-194.
27. Weber EJ (1987) Carotenoids and tocols of corn grain determined by HPLC. J Am Oil Chem Soc 47: 337-339.
28. Wilkie GS, Dickson KS, Gray NK (2003) Regulation of translation by 5′- and 3′-UTR-binding factors. Trends Biochem Sci 28: 182-188.
29. Wickens M, Bernsteina DS, Kimble J, Parker R (2002) A PUF family portrait: 3′UTR regulation as a way of life. Trends Genet 18: 150-157.
30. Yan J, Kandianis BC, Harjes EC, Bai L, Kim HE, Yang X, Skinner DJ, Fu Z, Mitchell S, Li Q, Fernandez GSM, Zaharoeva M, Babu R, Fu Y, Palacios N, Li J, DellaPenna D, Brutnell T, Buckler SE, Warburton LM, Rocheford T (2010) Rare genetic variation at Zea mays crtRB1 increases β-carotene in maize grain. Nat Genet 42: 322-327.
31. Zhang X, Pfieffer WH, Palacios-Rojas N, Babu R, Bouis H, Wang J (2012) Probability of success of breeding strategies for improving provitamin A content in maize. Theor Appl Genet 125: 235-246.