Mammalian Rest/Activity Patterns Explained by Physiologically Based Modeling

PLoS Computational Biology

Volumn 9, Issue 9, 2013, Pages

  Phillips, A J K ^a   Fulcher, B D ^b   Robinson, P A ^c,d,e   Klerman, E B ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c UNIVERSITY OF SYDNEY   (Australia)

^d UNIVERSITY OF SYDNEY   (Australia)

^e Centre for Integrated Research and Understanding of Sleep (CIRUS)   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN; MAMMALS;

ACTIVITY PATTERNS; BASED MODELLING; CIRCADIAN RHYTHMS; COMPUTATIONAL MODELLING; DAILY ACTIVITY; DOWN-STREAM; FULL-SPECTRUM; PACEMAKER NEURONS; SUPRACHIASMATIC NUCLEUS; UNIMODAL;

MODULATION;

ARTICLE; CIRCADIAN RHYTHM; DORSOMEDIAL HYPOTHALAMUS; HYPOTHALAMUS; LATERAL HYPOTHALAMUS; MAMMAL; MATHEMATICAL MODEL; PHENOTYPE; PHYSIOLOGY; PREOPTIC NUCLEUS; REST ACTIVITY PATTERN; SIMULATION; SLEEP WAKING CYCLE; SUPRACHIASMATIC NUCLEUS; VENTROLATERAL PREOPTIC NUCLEUS;

ANIMALIA; MAMMALIA; OCTODON; OCTODON DEGUS; RODENTIA; SAIMIRI;

ANIMALS; CIRCADIAN RHYTHM; MODELS, BIOLOGICAL; MOTOR ACTIVITY; SUPRACHIASMATIC NUCLEUS;

EID: 84884678344     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003213     Document Type: Article

References (72)

1. McNamara P, Capellini I, Harris E, Nunn CL, Barton RA, et al. (2008) The phylogeny of sleep database: A new resource for sleep scientists. Open Sleep J 1: 11-14.
2. Siegel JM, (2005) Clues to the functions of mammalian sleep. Nature 437: 1264-1271.
3. Levy O, Dayan T, Kronfeld-Schor N, Porter WP, (2012) Biophysical modeling of the temporal niche: From first principles to the evolution of activity patterns. Am Nat 179: 794-804.
4. Refinetti R, (2008) The diversity of temporal niches in mammals. Biol Rhythm Res 39: 173-192.
5. Mrosovsky N, (2003) Beyond the suprachiasmatic nucleus. Chronobiol Int 20: 1-8.
6. Mrosovsky N, Hattar S, (2005) Diurnal mice (Mus musculus) and other examples of temporal niche switching. J Comp Physiol A 191: 1011-1024.
7. Lesku JA, Bark RJ, Martinez-Gonzalez D, Rattenborg NC, Amlaner CJ, et al. (2008) Predator-induced plasticity in sleep architecture in wild-caught Norway rats (Rattus norvegicus). Behav Brain Res 189: 298-305.
8. Blanchong JA, McElhinny TL, Mahoney MM, Smale L, (1999) Nocturnal and diurnal rhythms in the unstriped Nile rat, Arvicanthis niloticus. J Biol Rhythms 14: 364-377.
9. Kas MJH, Edgar DM, (1999) A non-photic stimulus inverts the diurnal-nocturnal phase preference in Octodon degus. J Neurosci 19: 328-333.
10. Weinert D, Weinandy R, Gattermann R, (2007) Photic and non-photic effects on the daily activity pattern of Mongolian gerbils. Physiol Behav 90: 325-333.
11. Saper CB, Scammell TE, Lu J, (2005) Hypothalamic regulation of sleep and circadian rhythms. Nature 437: 1257-1263.
12. Erkert HG, (2008) Diurnality and nocturnality in nonhuman primates: Comparative chronobiological studies in laboratory and nature. Biol Rhythm Res 39: 229-267.
13. Cohen R, Kronfeld-Schor N, Ramanathan C, Baumgras A, Smale L, (2010) The substructure of the suprachiasmatic nucleus: Similarities between nocturnal and diurnal spiny mice. Brain Behav Evol 75: 9-22.
14. Inouye ST, Kawamura H, (1982) Characteristics of a circadian pacemaker in the suprachiasmatic nucleus. J Comp Physiol A 146: 153-160.
15. Reiter RJ, (1991) Melatonin: The chemical expression of darkness. Mol Cell Endocrinol 79: C153-158.
16. Schwartz MD, Nunez AA, Smale L, (2004) Differences in the suprachiasmatic nucleus and lower subparaventricular zone of diurnal and nocturnal rodents. Neuroscience 127: 13-23.
17. Nunez AA, Bult A, McElhinny TL, Smale L, (1999) Daily rhythms of Fos expression in hypothalamic targets of the suprachiasmatic nucleus in diurnal and nocturnal rodents. J Biol Rhythms 14: 300-306.
18. Martinez GS, Smale L, Nunez AA, (2002) Diurnal and nocturnal rodents show rhythms in orexinergic neurons. Brain Res 955: 1-7.
19. Refinetti R, (1996) Comparison of the body temperature rhythms of diurnal and nocturnal rodents. J Exp Zool 275: 67-70.
20. Mrosovsky N, (1999) Masking: History, definitions, and measurement. Chronobiol Int 16: 415-429.
21. Borbély AA, (1976) Sleep and motor activity of the rat during ultra-short light- dark cycles. Brain Res 114: 305-317.
22. Gander PH, Moore-Ede MC, (1983) Light-dark masking of circadian temperature and activity rhythms in squirrel monkeys. Am J Physiol 245: R927-R934.
23. Wexler DB, Moore-Ede MC, (1985) Circadian sleep-wake cycle organization in squirrel monkeys. Am J Physiol 248: R353-R362.
24. Li X, Gilbert J, Davis FC, (2005) Disruption of masking by hypothalamic lesions in Syrian hamsters. J Comp Physiol A 191: 23-30.
25. Redlin U, Vrang N, Mrosovsky N, (1999) Enhanced masking response to light in hamsters with IGL lesions. J Comp Physiol A 184: 449-456.
26. Redlin U, Cooper HM, Mrosovsky N, (2003) Increased masking response to light after ablation of the visual cortex in mice. Brain Res 965: 1-8.
27. Lu J, Shiromani PJ, Saper CB, (1999) Retinal input to the sleep-active ventrolateral preoptic nucleus in the rat. Neuroscience 93: 209-214.
28. Miller AM, Miller RB, Obermeyer WH, Behan M, Benca RM, (1999) The pretectum mediates rapid eye movement sleep regulation by light. Behav Neurosci 113: 755-765.
29. Redlin U, (2001) Neural basis and biological function of masking by light in mammals: Suppression of melatonin and locomotor activity. Chronobiol Int 18: 737-758.
30. Redlin U, Hattar S, Mrosovsky N, (2005) The circadian Clock mutant mouse: Impaired masking response to light. J Comp Physiol A 191: 51-59.
31. Fuller CA, Lydic R, Sulzman FM, Albers HE, Tepper B, et al. (1981) Circadian rhythm of body temperature persists after suprachiasmatic lesions in the squirrel monkey. Am J Physiol 241: R385-R391.
32. Sisk CL, Stephan FK, (1982) Central visual pathways and the distribution of sleep in 24-hr and 1-hr light-dark cycles. Physiol Behav 29: 231-239.
33. Redlin U, Mrosovsky N, (1999) Masking by light in hamsters with SCN lesions. J Comp Physiol A 184: 439-448.
34. Stephan FK, Zucker I, (1972) Circadian rhythms in drinking behavior and locomotor activity of rats are eliminated by hypothalamic lesions. Proc Natl Acad Sci USA 69: 1583-1586.
35. Ibuka N, Inouye ST, Kawamura H, (1977) Analysis of sleep-wakefulness rhythms in male rats after suprachiasmatic nucleus lesions and ocular enucleation. Brain Res 122: 33-47.
36. Redlin U, Mrosovsky N, (2004) Nocturnal activity in a diurnal rodent (Arvicanthis niloticus): The importance of masking. J Biol Rhythms 19: 58-67.
37. Vivanco P, Rol MA, Madrid JA, (2009) Two steady-entrainment phases and graded masking effects by light generate different circadian chronotypes in Octodon degus. Chronobiol Int 26: 219-241.
38. Saper CB, Fuller PM, Pedersen NP, Lu J, Scammell TE, (2010) Sleep state switching. Neuron 68: 1023-1042.
39. Rajkowski J, Kubiak P, Aston-Jones G, (1994) Locus coeruleus activity in monkey: Phasic and tonic changes are associated with altered vigilance. Brain Res Bull 35: 607-616.
40. Phillips AJK, Robinson PA, Kedziora DJ, Abeysuriya RG, (2010) Mammalian sleep dynamics: How diverse features arise from a common physiological framework. PLoS Comput Biol 6: e1000826.
41. Phillips AJK, Chen PY, Robinson PA, (2010) Probing the mechanisms of chronotype using quantitative modeling. J Biol Rhythms 25: 217-227.
42. Ibuka N, Kawamura H, (1975) Loss of circadian rhythm in sleep-wakefulness cycle in the rat by suprachiasmatic nucleus lesions. Brain Res 96: 76-81.
43. Edgar DM, Dement WC, Fuller CA, (1993) Effect of SCN lesions on sleep in squirrel monkeys: Evidence for opponent processes in sleep-wake regulation. J Neurosci 13 (3):: 1065-1079.
44. Adams PM, Barratt ES, (1974) Nocturnal sleep in squirrel monkeys. Electroencephalogr Clin Neurophysiol 36: 201-204.
45. Behn CGD, Brown EN, Scammell TE, Kopell NJ, (2007) Mathematical model of network dynamics governing mouse sleep-wake behavior. J Neurophysiol 97: 3828-3840.
46. Fleshner M, Booth V, Forger DB, Behn CGD, (2011) Circadian regulation of sleep-wake behaviour in nocturnal rats requires multiple signals from suprachiasmatic nucleus. Philos Transact A Math Phys Eng Sci 369: 3855-3883.
47. Robinson PA, Phillips AJK, Fulcher BD, Puckeridge M, Roberts JA, (2011) Quantitative modelling of sleep dynamics. Philos Transact A Math Phys Eng Sci 369: 3840-3854.
48. Sedigh-Sarvestani M, Schiff SJ, Gluckman BJ, (2012) Reconstructing mammalian sleep dynamics with data assimilation. PLoS Comput Biol 8: e1002788.
49. Rempe MJ, Best J, Terman D, (2010) A mathematical model of the sleep/wake cycle. J Math Biol 60: 615-644.
50. Kumar R, Bose A, Mallick BN, (2011) A mathematical model towards understanding the mechanism of neuronal regulation of Wake-NREMS-REMS states. PLoS One 7: e42059.
51. Crompton AW, Taylor CR, Jagger JA, (1978) Evolution of homeothermy in mammals. Nature 272: 333-336.
52. Mistlberger RE, (1994) Circadian food-anticipatory activity: Formal models and physiological mechanisms. Neurosci Biobehav Rev 18: 171-195.
53. Oster H, Avivi A, Joel A, Albrecht U, Nevo E, (2002) A switch from diurnal to nocturnal activity in S. ehrenbergi is accompanied by an uncoupling of light input and the circadian clock. Curr Biol 12: 1919-1922.
54. Doyle SE, Yoshikawa T, Hillson H, Menaker M, (2008) Retinal pathways influence temporal niche. Proc Natl Acad Sci USA 105: 13133-13138.
55. Castillo-Ruiz A, Nixon JP, Smale L, Nunez AA, (2010) Neural activation in arousal and reward areas of the brain in day-active and night-active grass rats. Neuroscience 165: 337-349.
56. Yamaguchi S, Isejima H, Matsuo T, Okura R, Yagita K, et al. (2003) Synchronization of cellular clocks in the suprachiasmatic nucleus. Science 302: 1408-1412.
57. Ramanathan C, Nunez AA, Smale L, (2008) Daily rhythms in PER1 within and beyond the suprachiasmatic nucleus of female grass rats (Arvicanthis niloticus). Neuroscience 156: 48-58.
58. Pittendrigh CS, Daan S, (1976) A functional analysis of circadian pacemakers in nocturnal rodents V. Pacemaker structure: A clock for all seasons. J Comp Physiol A 106: 333-355.
59. Stoleru D, Peng Y, Agosto J, Rosbash M, (2004) Coupled oscillators control morning and evening locomotor behaviour of Drosophila. Nature 431: 862-868.
60. de la Iglesia H, Meyer J, Carpino A Jr, Schwartz WJ, (2000) Antiphase oscillation of the left and right suprachiasmatic nuclei. Science 290: 799-801.
61. Phillips AJK, Robinson PA, Klerman EB, (2013) Arousal state feedback as a potential physiological generator of the ultradian REM/NREM sleep cycle. J Theor Biol 319: 75-87.
62. Mistlberger RE, (2005) Circadian regulation of sleep in mammals: Role of the suprachiasmatic nucleus. Brain Res Brain Res Rev 49: 429-454.
63. Panda S, Hogenesch JB, (2004) It's all in the timing: Many clocks, many outputs. Journal of Biological Rhythms 19: 374-387.
64. Daan S, Spoelstra K, Albrecht U, Schmutz I, Daan M, et al. (2011) Lab mice in the field: Unorthodox daily activity and effects of a dysfunctional circadian clock allele. Journal of Biological Rhythms 26: 118-129.
65. Vanin S, Bhutani S, Montelli S, Menegazzi P, Green EW, et al. (2012) Unexpected features of Drosophila circadian behavioural rhythms under natural conditions. Nature 484: 371-375.
66. Phillips AJK, Czeisler CA, Klerman EB, (2011) Revisiting spontaneous internal desynchrony using a quantitative model of sleep physiology. J Biol Rhythms 26: 441-453.
67. Phillips AJK, Robinson PA, (2007) A quantitative model of sleep-wake dynamics based on the physiology of the brainstem ascending arousal system. J Biol Rhythms 22: 167-179.
68. Kronauer RE (1990) A quantitative model for the effects of light on the amplitude and phase of the deep circadian pacemaker, based on human data. In: Horne J, editor. Sleep '90, Proceedings of the Tenth European Congress on Sleep Research. Dusseldorf: Pontenagel Press. pp. 306-309.
69. St Hilaire MA, Klerman EB, Khalsa SBS, Wright KP Jr, Czeisler CA, et al. (2007) Addition of a non-photic component to a light-based mathematical model of the human circadian pacemaker. J Theor Biol 247: 583-599.
70. Jewett ME, Kronauer RE, (1998) Refinement of a limit cycle oscillator model of the effects of light on the human circadian pacemaker. J Theor Biol 192: 455-465.
71. Kronauer RE, Forger DB, Jewett ME, (1999) Quantifying human circadian pacemaker response to brief, extended, and repeated light stimuli over the photopic range. J Biol Rhythms 14: 500-515.
72. Phillips AJK, Robinson PA, (2008) Sleep deprivation in a quantitative physiologically based model of the ascending arousal system. J Theor Biol 255: 413-423.