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Volumn 27, Issue 8, 2013, Pages 675-679

Estimation of the size of drug-like chemical space based on GDB-17 data

Author keywords

Chemical space; Drug like chemical space; Graphs enumeration

Indexed keywords

ATOMS; CHEMICAL ANALYSIS; SYNTHESIS (CHEMICAL);

EID: 84884675983     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-013-9672-4     Document Type: Article
Times cited : (504)

References (36)
  • 4
    • 0000760153 scopus 로고
    • The number of isomeric hydrocarbons of the methane series
    • 10.1021/ja01359a034 10.1021/ja01359a034 1:CAS:528:DyaA3MXktlSiuw%3D%3D
    • Henze HR, Blair CM (1931) The number of isomeric hydrocarbons of the methane series. J Am Chem Soc 53(8):3077-3085. doi: 10.1021/ja01359a034
    • (1931) J Am Chem Soc , vol.53 , Issue.8 , pp. 3077-3085
    • Henze, H.R.1    Blair, C.M.2
  • 5
    • 0041151466 scopus 로고
    • The number of stereoisomeric and non-stereoisomeric paraffin hydrocarbons
    • 10.1021/ja01343a044 10.1021/ja01343a044 1:CAS:528:DyaA38XisFyhtA%3D%3D
    • Blair CM, Henze HR (1932) The number of stereoisomeric and non-stereoisomeric paraffin hydrocarbons. J Am Chem Soc 54(4):1538-1545. doi: 10.1021/ja01343a044
    • (1932) J Am Chem Soc , vol.54 , Issue.4 , pp. 1538-1545
    • Blair, C.M.1    Henze, H.R.2
  • 6
    • 0030039619 scopus 로고    scopus 로고
    • The art and practice of structure-based drug design: A molecular modeling perspective
    • 10.1002/(sici)1098-1128(199601)16:1<3: aid-med1>3.0.co;2-6 10.1002/(SICI)1098-1128(199601)16:1<3: AID-MED1>3.0.CO;2-6 1:CAS:528:DyaK28XhtFyls78%3D
    • Bohacek RS, McMartin C, Guida WC (1996) The art and practice of structure-based drug design: a molecular modeling perspective. Med Res Rev 16(1):3-50. doi: 10.1002/(sici)1098-1128(199601)16:1<3:aid-med1>3.0.co;2-6
    • (1996) Med Res Rev , vol.16 , Issue.1 , pp. 3-50
    • Bohacek, R.S.1    McMartin, C.2    Guida, W.C.3
  • 7
    • 0037362041 scopus 로고    scopus 로고
    • Cheminformatics Analysis of Organic Substituents: Identification of the most common substituents, calculation of substituent properties, and automatic identification of drug-like bioisosteric groups
    • 10.1021/ci0255782
    • Ertl P (2002) Cheminformatics Analysis of Organic Substituents: identification of the most common substituents, calculation of substituent properties, and automatic identification of drug-like bioisosteric groups. J Chem Inf Comput Sci 43(2):374-380. doi: 10.1021/ci0255782
    • (2002) J Chem Inf Comput Sci , vol.43 , Issue.2 , pp. 374-380
    • Ertl, P.1
  • 8
    • 78650401399 scopus 로고    scopus 로고
    • Exploring neurotherapeutic space: How many neurological drugs exist (or could exist)?
    • 10.1111/j.2042-7158.2010.01161.x 10.1111/j.2042-7158.2010.01161.x 1:CAS:528:DC%2BC3MXnslKlsg%3D%3D
    • Weaver DF, Weaver CA (2011) Exploring neurotherapeutic space: how many neurological drugs exist (or could exist)? J Pharm Pharmacol 63(1):136-139. doi: 10.1111/j.2042-7158.2010.01161.x
    • (2011) J Pharm Pharmacol , vol.63 , Issue.1 , pp. 136-139
    • Weaver, D.F.1    Weaver, C.A.2
  • 9
    • 16244388286 scopus 로고    scopus 로고
    • Virtual exploration of the small-molecule chemical universe below 160 Daltons
    • 10.1002/anie.200462457 10.1002/anie.200462457 1:CAS:528: DC%2BD2MXit12gs74%3D
    • Fink T, Bruggesser H, Reymond J-L (2005) Virtual exploration of the small-molecule chemical universe below 160 Daltons. Angew Chem Int Ed 44(10):1504-1508. doi: 10.1002/anie.200462457
    • (2005) Angew Chem Int Ed , vol.44 , Issue.10 , pp. 1504-1508
    • Fink, T.1    Bruggesser, H.2    Reymond, J.-L.3
  • 10
    • 84869987352 scopus 로고    scopus 로고
    • Enumeration of 166 billion organic small molecules in the chemical universe database GDB-17
    • 10.1021/ci300415d 10.1021/ci300415d 1:CAS:528:DC%2BC38XhsFClsL3J
    • Ruddigkeit L, van Deursen R, Blum LC, Reymond J-L (2012) Enumeration of 166 billion organic small molecules in the chemical universe database GDB-17. J Chem Inf Model 52(11):2864-2875. doi: 10.1021/ci300415d
    • (2012) J Chem Inf Model , vol.52 , Issue.11 , pp. 2864-2875
    • Ruddigkeit, L.1    Van Deursen, R.2    Blum, L.C.3    Reymond, J.-L.4
  • 11
    • 84913364150 scopus 로고
    • Ueber die analytischen Figuren, welche in der Mathematik Bäume genannt werden und ihre Anwendung auf die Theorie chemischer Verbindungen
    • 10.1002/cber.18750080252 10.1002/cber.18750080252
    • Cayley E (1875) Ueber die analytischen Figuren, welche in der Mathematik Bäume genannt werden und ihre Anwendung auf die Theorie chemischer Verbindungen. Ber Dtsch Chem Ges 8(2):1056-1059. doi: 10.1002/cber.18750080252
    • (1875) Ber Dtsch Chem Ges , vol.8 , Issue.2 , pp. 1056-1059
    • Cayley, E.1
  • 12
    • 84979191460 scopus 로고
    • Ueber das Problem, die Anzahl der isomeren Paraffine von der Formel CnH2n + 2 zu bestimmen
    • 10.1002/cber.18970300310 10.1002/cber.18970300310 1:CAS:528: DyaD28XptlantA%3D%3D
    • Herrmann F (1897) Ueber das Problem, die Anzahl der isomeren Paraffine von der Formel CnH2n + 2 zu bestimmen. Ber Dtsch Chem Ges 30(3):2423-2426. doi: 10.1002/cber.18970300310
    • (1897) Ber Dtsch Chem Ges , vol.30 , Issue.3 , pp. 2423-2426
    • Herrmann, F.1
  • 13
    • 84961493070 scopus 로고
    • Zur Statistik chemischer Verbindungen
    • 10.1002/cber.187500802191 10.1002/cber.187500802191
    • Schiff H (1875) Zur Statistik chemischer Verbindungen. Ber Dtsch Chem Ges 8(2):1542-1547. doi: 10.1002/cber.187500802191
    • (1875) Ber Dtsch Chem Ges , vol.8 , Issue.2 , pp. 1542-1547
    • Schiff, H.1
  • 14
    • 84961492497 scopus 로고
    • Die Isomerie-Arten bei den Homologen der Paraffin-Reihe
    • 10.1002/cber.189703002144 10.1002/cber.189703002144 1:CAS:528: DyaD28XptlSrsQ%3D%3D
    • Losanitsch SM (1897) Die Isomerie-Arten bei den Homologen der Paraffin-Reihe. Ber Dtsch Chem Ges 30(2):1917-1926. doi: 10.1002/cber. 189703002144
    • (1897) Ber Dtsch Chem Ges , vol.30 , Issue.2 , pp. 1917-1926
    • Losanitsch, S.M.1
  • 15
    • 0008949649 scopus 로고
    • The number of structural isomers of certain homologs of methane and methanol
    • 10.1021/ja01346a035 10.1021/ja01346a035 1:CAS:528:DyaA38XktFKqtQ%3D%3D
    • Perry D (1932) The number of structural isomers of certain homologs of methane and methanol. J Am Chem Soc 54(7):2918-2920. doi: 10.1021/ja01346a035
    • (1932) J Am Chem Soc , vol.54 , Issue.7 , pp. 2918-2920
    • Perry, D.1
  • 17
    • 84968484491 scopus 로고
    • Dissimilarity characteristic theorems for graphs
    • 10.1090/S0002-9939-1960-0111699-6
    • Harary F, Norman RZ (1960) Dissimilarity characteristic theorems for graphs. Proc Am Math Soc 11(2):332-334
    • (1960) Proc Am Math Soc , vol.11 , Issue.2 , pp. 332-334
    • Harary, F.1    Norman, R.Z.2
  • 19
    • 0000879530 scopus 로고
    • The numbers of chiral and achiral alkanes and monosubstituted alkanes
    • 10.1016/0040-4020(76)80049-X 10.1016/0040-4020(76)80049-X 1:CAS:528:DyaE28Xhsl2nsr0%3D
    • Robinson RW, Harry F, Balaban AT (1976) The numbers of chiral and achiral alkanes and monosubstituted alkanes. Tetrahedron 32(3):355-361. doi: 10.1016/0040-4020(76)80049-X
    • (1976) Tetrahedron , vol.32 , Issue.3 , pp. 355-361
    • Robinson, R.W.1    Harry, F.2    Balaban, A.T.3
  • 20
    • 58149210915 scopus 로고
    • Enumeration of constitutional isomers of polyenes
    • 10.1016/0166-1280(95)04329-6 10.1016/0166-1280(95)04329-6 1:CAS:528:DyaK28Xns1Sg
    • Cyvin SJ, Brunvoll J, Cyvin BN (1995) Enumeration of constitutional isomers of polyenes. J Mol Struct THEOCHEM 357(3):255-261. doi: 10.1016/0166-1280(95)04329-6
    • (1995) J Mol Struct THEOCHEM , vol.357 , Issue.3 , pp. 255-261
    • Cyvin, S.J.1    Brunvoll, J.2    Cyvin, B.N.3
  • 22
    • 0012029508 scopus 로고
    • Apparent symmetry of cyclohexane
    • 10.1021/ja00851a003 10.1021/ja00851a003 1:CAS:528:DyaE2MXlsVOjsLw%3D
    • Leonard JE, Hammond GS, Simmons HE (1975) Apparent symmetry of cyclohexane. J Am Chem Soc 97(18):5052-5054. doi: 10.1021/ja00851a003
    • (1975) J Am Chem Soc , vol.97 , Issue.18 , pp. 5052-5054
    • Leonard, J.E.1    Hammond, G.S.2    Simmons, H.E.3
  • 23
    • 0001224789 scopus 로고    scopus 로고
    • Combinatorics of small molecular structures
    • John Wiley & Sons, Ltd. doi: 10.1002/0470845015.cna014m
    • Weininger D (2002) Combinatorics of small molecular structures. In: Encyclopedia of computational chemistry. John Wiley & Sons, Ltd. doi: 10.1002/0470845015.cna014m
    • (2002) Encyclopedia of Computational Chemistry
    • Weininger, D.1
  • 24
    • 34250643033 scopus 로고    scopus 로고
    • A quantitative approach to the estimation of chemical space from a given geometry by the combination of atomic species
    • 10.1002/qsar.200630037 10.1002/qsar.200630037 1:CAS:528: DC%2BD2sXmtFKjsbs%3D
    • Ogata K, Isomura T, Yamashita H, Kubodera H (2007) A quantitative approach to the estimation of chemical space from a given geometry by the combination of atomic species. QSAR Comb Sci 26(5):596-607. doi: 10.1002/qsar.200630037
    • (2007) QSAR Comb Sci , vol.26 , Issue.5 , pp. 596-607
    • Ogata, K.1    Isomura, T.2    Yamashita, H.3    Kubodera, H.4
  • 25
    • 84859105504 scopus 로고    scopus 로고
    • Size estimation of chemical space: How big is it?
    • 10.1111/j.2042-7158.2011.01424.x 10.1111/j.2042-7158.2011.01424.x 1:CAS:528:DC%2BC38XltFSit7k%3D
    • Drew KLM, Baiman H, Khwaounjoo P, Yu B, Reynisson J (2012) Size estimation of chemical space: how big is it? J Pharm Pharmacol 64(4):490-495. doi: 10.1111/j.2042-7158.2011.01424.x
    • (2012) J Pharm Pharmacol , vol.64 , Issue.4 , pp. 490-495
    • Drew, K.L.M.1    Baiman, H.2    Khwaounjoo, P.3    Yu, B.4    Reynisson, J.5
  • 26
    • 0002606755 scopus 로고    scopus 로고
    • Virtual screening - An overview
    • 10.1016/S1359-6446(97)01163-X 10.1016/S1359-6446(97)01163-X 1:CAS:528:DyaK1cXisVWjur8%3D
    • Walters WP, Stahl MT, Murcko MA (1998) Virtual screening - an overview. Drug Discov Today 3(4):160-178. doi: 10.1016/S1359-6446(97)01163-X
    • (1998) Drug Discov Today , vol.3 , Issue.4 , pp. 160-178
    • Walters, W.P.1    Stahl, M.T.2    Murcko, M.A.3
  • 27
    • 33644861784 scopus 로고    scopus 로고
    • Diversity in medicinal chemistry space
    • 10.2174/156802606775193310 1:CAS:528:DC%2BD28XhsVKmtL8%3D
    • Gorse A-D (2006) Diversity in medicinal chemistry space. Curr Trends Med Chem 6(1):3-18
    • (2006) Curr Trends Med Chem , vol.6 , Issue.1 , pp. 3-18
    • Gorse, A.-D.1
  • 28
    • 0037362544 scopus 로고    scopus 로고
    • Combinatorial compound libraries for drug discovery: An ongoing challenge
    • 10.1038/nrd1035 1:CAS:528:DC%2BD3sXhsFKrtLk%3D
    • Mario Geysen H, Schoenen F, Wagner D, Wagner R (2003) Combinatorial compound libraries for drug discovery: an ongoing challenge. Nat Rev Drug Discov 2(3):222-230
    • (2003) Nat Rev Drug Discov , vol.2 , Issue.3 , pp. 222-230
    • Mario Geysen, H.1    Schoenen, F.2    Wagner, D.3    Wagner, R.4
  • 29
    • 0034237264 scopus 로고    scopus 로고
    • Diversity screening versus focussed screening in drug discovery
    • 10.1016/S1359-6446(00)01517-8 10.1016/S1359-6446(00)01517-8
    • Valler MJ, Green D (2000) Diversity screening versus focussed screening in drug discovery. Drug Discov Today 5(7):286-293. doi: 10.1016/S1359-6446(00) 01517-8
    • (2000) Drug Discov Today , vol.5 , Issue.7 , pp. 286-293
    • Valler, M.J.1    Green, D.2
  • 30
    • 33748085064 scopus 로고    scopus 로고
    • The number of planar graphs and properties of random planar graphs
    • AD, Barcelona, Spain, 6-10 June 2005. Discrete Mathematics and Theoretical Computer Science (DMTCS), Nancy, France
    • Giménez O, Noy M (2005) The number of planar graphs and properties of random planar graphs. In: International conference on analysis of algorithms DMTCS proc. AD, Barcelona, Spain, 6-10 June 2005. Discrete Mathematics and Theoretical Computer Science (DMTCS), Nancy, France. p 147-156
    • (2005) International Conference on Analysis of Algorithms DMTCS Proc , pp. 147-156
    • Giménez, O.1    Noy, M.2
  • 33
    • 84864199587 scopus 로고    scopus 로고
    • ZINC: A free tool to discover chemistry for biology
    • 10.1021/ci3001277 10.1021/ci3001277 1:CAS:528:DC%2BC38XmvFGnsrg%3D
    • Irwin JJ, Sterling T, Mysinger MM, Bolstad ES, Coleman RG (2012) ZINC: a free tool to discover chemistry for biology. J Chem Inf Model 52(7):1757-1768. doi: 10.1021/ci3001277
    • (2012) J Chem Inf Model , vol.52 , Issue.7 , pp. 1757-1768
    • Irwin, J.J.1    Sterling, T.2    Mysinger, M.M.3    Bolstad, E.S.4    Coleman, R.G.5
  • 34
    • 84871531960 scopus 로고    scopus 로고
    • Drug discovery: Nature's pieces
    • 10.1038/nchem.1537 1:CAS:528:DC%2BC38XhvVCktbzK
    • Shoichet BK (2013) Drug discovery: nature's pieces. Nat Chem 5(1):9-10
    • (2013) Nat Chem , vol.5 , Issue.1 , pp. 9-10
    • Shoichet, B.K.1
  • 35
    • 0036489455 scopus 로고    scopus 로고
    • Combinatorial library design using a multiobjective genetic algorithm
    • 10.1021/ci010375j 10.1021/ci010375j 1:CAS:528:DC%2BD38XotFaisw%3D%3D
    • Gillet VJ, Khatib W, Willett P, Fleming PJ, Green DVS (2002) Combinatorial library design using a multiobjective genetic algorithm. J Chem Inf Comput Sci 42(2):375-385. doi: 10.1021/ci010375j
    • (2002) J Chem Inf Comput Sci , vol.42 , Issue.2 , pp. 375-385
    • Gillet, V.J.1    Khatib, W.2    Willett, P.3    Fleming, P.J.4    Green, D.V.S.5
  • 36
    • 48949083830 scopus 로고    scopus 로고
    • Chemical space travel
    • 10.1002/cmdc.200700021 10.1002/cmdc.200700021
    • van Deursen R, Reymond J-L (2007) Chemical space travel. ChemMedChem 2(5):636-640. doi: 10.1002/cmdc.200700021
    • (2007) ChemMedChem , vol.2 , Issue.5 , pp. 636-640
    • Van Deursen, R.1    Reymond, J.-L.2


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