메뉴 건너뛰기




Volumn 7, Issue 10, 2013, Pages 1985-1996

Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits

Author keywords

Horizontal gene transfer; Nigritoxin; Phylogeny; Shrimp; Vibrio; Virulence

Indexed keywords

BACTERIAL TOXIN;

EID: 84884672682     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2013.90     Document Type: Article
Times cited : (30)

References (32)
  • 1
    • 73949113571 scopus 로고    scopus 로고
    • Vibrios as causal agents of zoonoses
    • Austin B. (2010). Vibrios as causal agents of zoonoses. Vet Microbiol 140: 310-317
    • (2010) Vet Microbiol , vol.140 , pp. 310-317
    • Austin, B.1
  • 2
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 3
    • 84865832282 scopus 로고    scopus 로고
    • Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance
    • Cordero OX, Wildschutte H, Kirkup B, Proehl S, Ngo L, Hussain F et al. (2012). Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance. Science 337: 1228-1231
    • (2012) Science , vol.337 , pp. 1228-1231
    • Cordero, O.X.1    Wildschutte, H.2    Kirkup, B.3    Proehl, S.4    Ngo, L.5    Hussain, F.6
  • 4
    • 0036061865 scopus 로고    scopus 로고
    • A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
    • Daubin V, Gouy M, Perriere G. (2002). A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history. Genome Res 12: 1080-1090
    • (2002) Genome Res , vol.12 , pp. 1080-1090
    • Daubin, V.1    Gouy, M.2    Perriere, G.3
  • 5
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 6
    • 0030790687 scopus 로고    scopus 로고
    • Common themes in microbial pathogenicity revisited
    • Finlay BB, Falkow S. (1997). Common themes in microbial pathogenicity revisited. Microbiol Mol Biol Rev 61: 136-169
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 136-169
    • Finlay, B.B.1    Falkow, S.2
  • 7
    • 33644967602 scopus 로고    scopus 로고
    • Summer syndromé in litopenaeus stylirostris in New Caledonia: Pathology and epidemiology of the etiological agent, Vibrio nigripulchritudo
    • Goarant C, Ansquer D, Herlin J, Domalain F, Imbert F, de Decker S. (2006a). 'Summer syndromé in litopenaeus stylirostris in New Caledonia: Pathology and epidemiology of the etiological agent, Vibrio nigripulchritudo. Aquaculture 253: 105-113
    • (2006) Aquaculture , vol.253 , pp. 105-113
    • Goarant, C.1    Ansquer, D.2    Herlin, J.3    Domalain, F.4    Imbert, F.5    De Decker, S.6
  • 8
    • 33745082841 scopus 로고    scopus 로고
    • Molecular epidemiology of Vibrio nigripulchritudo, a pathogen of cultured penaeid shrimp (Litopenaeus stylirostris) in New Caledonia
    • Goarant C, Reynaud Y, Ansquer D, de Decker S, Saulnier D, le Roux F. (2006b). Molecular epidemiology of Vibrio nigripulchritudo, a pathogen of cultured penaeid shrimp (Litopenaeus stylirostris) in New Caledonia. Syst Appl Microbiol 29: 570-580
    • (2006) Syst Appl Microbiol , vol.29 , pp. 570-580
    • Goarant, C.1    Reynaud, Y.2    Ansquer, D.3    De Decker, S.4    Saulnier, D.5    Le Roux, F.6
  • 9
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59: 307-321
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 12
    • 34247156738 scopus 로고    scopus 로고
    • Isolation and characterization of the Serratia entomophila antifeeding prophage
    • Hurst MR, Beard SS, Jackson TA, Jones SM. (2007). Isolation and characterization of the Serratia entomophila antifeeding prophage. FEMS Microbiol Lett 270: 42-48
    • (2007) FEMS Microbiol Lett , vol.270 , pp. 42-48
    • Hurst, M.R.1    Beard, S.S.2    Jackson, T.A.3    Jones, S.M.4
  • 13
    • 3242808947 scopus 로고    scopus 로고
    • Cloning Serratia entomophila antifeeding genes-A putative defective prophage active against the grass grub Costelytra zealandica
    • Hurst MR, Glare TR, Jackson TA. (2004). Cloning Serratia entomophila antifeeding genes-A putative defective prophage active against the grass grub Costelytra zealandica. J Bacteriol 186: 5116-5128
    • (2004) J Bacteriol , vol.186 , pp. 5116-5128
    • Hurst, M.R.1    Glare, T.R.2    Jackson, T.A.3
  • 14
    • 0347994901 scopus 로고    scopus 로고
    • Phylogenomic analysis of type i polyketide synthase genes in pathogenic and saprobic ascomycetes
    • Kroken S, Glass NL, Taylor JW, Yoder OC, Turgeon BG. (2003). Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes. Proc Natl Acad Sci USA 100: 15670-15675
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 15670-15675
    • Kroken, S.1    Glass, N.L.2    Taylor, J.W.3    Yoder, O.C.4    Turgeon, B.G.5
  • 15
    • 33846911496 scopus 로고    scopus 로고
    • Construction of a Vibrio splendidus mutant lacking the metalloprotease gene vsm by use of a novel counterselectable suicide vector
    • Le Roux F, Binesse J, Saulnier D, Mazel D. (2007). Construction of a Vibrio splendidus mutant lacking the metalloprotease gene vsm by use of a novel counterselectable suicide vector. Appl Environ Microbiol 73: 777-784
    • (2007) Appl Environ Microbiol , vol.73 , pp. 777-784
    • Le Roux, F.1    Binesse, J.2    Saulnier, D.3    Mazel, D.4
  • 16
    • 79551469164 scopus 로고    scopus 로고
    • Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids
    • Le Roux F, Labreuche Y, Davis BM, Iqbal N, Mangenot S, Goarant C et al. (2011). Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids. Environ Microbiol 13: 296-306
    • (2011) Environ Microbiol , vol.13 , pp. 296-306
    • Le Roux, F.1    Labreuche, Y.2    Davis, B.M.3    Iqbal, N.4    Mangenot, S.5    Goarant, C.6
  • 17
    • 79959920872 scopus 로고    scopus 로고
    • AntiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
    • Medema MH, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach MA et al. (2011). AntiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic acids Res 39: W339-W346
    • (2011) Nucleic Acids Res , vol.39
    • Medema, M.H.1    Blin, K.2    Cimermancic, P.3    De Jager, V.4    Zakrzewski, P.5    Fischbach, M.A.6
  • 18
    • 0037396440 scopus 로고    scopus 로고
    • The contribution of melanin to microbial pathogenesis
    • Nosanchuk JD, Casadevall A. (2003). The contribution of melanin to microbial pathogenesis. Cell Microbiol 5: 203-223
    • (2003) Cell Microbiol , vol.5 , pp. 203-223
    • Nosanchuk, J.D.1    Casadevall, A.2
  • 19
    • 27144531235 scopus 로고    scopus 로고
    • Mutations in HlyD, part of the type 1 translocator for hemolysin secretion, affect the folding of the secreted toxin
    • Pimenta AL, Racher K, Jamieson L, Blight MA, Holland IB. (2005). Mutations in HlyD, part of the type 1 translocator for hemolysin secretion, affect the folding of the secreted toxin. J Bacteriol 187: 7471-7480
    • (2005) J Bacteriol , vol.187 , pp. 7471-7480
    • Pimenta, A.L.1    Racher, K.2    Jamieson, L.3    Blight, M.A.4    Holland, I.B.5
  • 21
    • 84883242414 scopus 로고    scopus 로고
    • A genomic survey of reb homologs suggests widespread occurrence of R-bodies in proteobacteria
    • Raymann K, Bobay LM, Doak TG, Lynch M, Gribaldo S. (2013). A genomic survey of reb homologs suggests widespread occurrence of R-bodies in proteobacteria. G3 (Bethesda) 3: 505-516
    • (2013) G3 (Bethesda) , Issue.3 , pp. 505-516
    • Raymann, K.1    Bobay, L.M.2    Doak, T.G.3    Lynch, M.4    Gribaldo, S.5
  • 23
    • 44249123790 scopus 로고    scopus 로고
    • Correlation between detection of a plasmid and high-level virulence of Vibrio nigripulchritudo, a pathogen of the shrimp Litopenaeus stylirostris
    • Reynaud Y, Saulnier D, Mazel D, Goarant C, Le Roux F. (2008). Correlation between detection of a plasmid and high-level virulence of Vibrio nigripulchritudo, a pathogen of the shrimp Litopenaeus stylirostris. Appl Environ Microbiol 74: 3038-3047
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3038-3047
    • Reynaud, Y.1    Saulnier, D.2    Mazel, D.3    Goarant, C.4    Le Roux, F.5
  • 24
    • 36148996779 scopus 로고    scopus 로고
    • Mass mortality of cultured kuruma prawn Peneaus japonicus caused by Vibrio nigripulchritudo
    • Sakai T, Hirae T, Yuasa K, Kamaishi T, Matsuyama T, Miwa S et al. (2007). Mass mortality of cultured kuruma prawn Peneaus japonicus caused by Vibrio nigripulchritudo. Fish Pathol 42: 141-147
    • (2007) Fish Pathol , vol.42 , pp. 141-147
    • Sakai, T.1    Hirae, T.2    Yuasa, K.3    Kamaishi, T.4    Matsuyama, T.5    Miwa, S.6
  • 25
    • 84867098002 scopus 로고    scopus 로고
    • Tracing the role of R-Bodies in the killer trait: Absence of toxicity of R-body producing recombinant e coli on paramecia
    • Schrallhammer M, Galati S, Altenbuchner J, Schweikert M, Gortz HD, Petroni G. (2012). Tracing the role of R-bodies in the killer trait: Absence of toxicity of R-body producing recombinant E. coli on paramecia. Eur J Protistol 48: 290-296
    • (2012) Eur J Protistol , vol.48 , pp. 290-296
    • Schrallhammer, M.1    Galati, S.2    Altenbuchner, J.3    Schweikert, M.4    Gortz, H.D.5    Petroni, G.6
  • 26
    • 0034887171 scopus 로고    scopus 로고
    • Polyketide biosyn thesis a millennium review
    • Staunton J, Weissman KJ. (2001). Polyketide biosynthesis: A millennium review. Nat Prod Rep 18: 380-416
    • (2001) Nat Prod Rep , vol.18 , pp. 380-416
    • Staunton, J.1    Weissman, K.J.2
  • 30
    • 77954761569 scopus 로고    scopus 로고
    • Integrative and conjugative elements: Mosaic mobile genetic elements enabling dynamic lateral gene flow
    • Wozniak RA, Waldor MK. (2010). Integrative and conjugative elements: Mosaic mobile genetic elements enabling dynamic lateral gene flow. Nat Rev Microbiol 8: 552-563
    • (2010) Nat Rev Microbiol , vol.8 , pp. 552-563
    • Wozniak, R.A.1    Waldor, M.K.2
  • 31
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. (2008). Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 32
    • 84859078407 scopus 로고    scopus 로고
    • The natural product domain seeker NaPDoS: A phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
    • Ziemert N, Podell S, Penn K, Badger JH, Allen E, Jensen PR. (2012). The natural product domain seeker NaPDoS: A phylogeny based bioinformatic tool to classify secondary metabolite gene diversity. PLoS One 7: E34064.
    • (2012) PLoS One , vol.7
    • Ziemert, N.1    Podell, S.2    Penn, K.3    Badger, J.H.4    Allen, E.5    Jensen, P.R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.