Molecular epidemiology of Vibrio nigripulchritudo, a pathogen of cultured penaeid shrimp (Litopenaeus stylirostris) in New Caledonia

Systematic and Applied Microbiology

Volumn 29, Issue 7, 2006, Pages 570-580

  Goarant, Cyrille ^a   Reynaud, Yann ^a   Ansquer, Dominique ^a   Decker, Sophie de ^a   Saulnier, Denis ^a   Roux, Frédérique le ^a  

^a IFREMER   (France)

Author keywords

AP PCR; Epidemiology; Mariculture; MLST; Typing; Vibriosis; Virulence

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM; CONTROLLED STUDY; GENE LOCUS; GENE SEQUENCE; MOLECULAR TYPING; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SHRIMP; VIBRIO NIGRIPULCHRITUDO;

DECAPODA (CRUSTACEA); LITOPENAEUS STYLIROSTRIS; PENAEIDAE; VIBRIO NIGRIPULCHRITUDO;

EID: 33745082841     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2005.12.005     Document Type: Article

References (41)

1. Austin B., Alsina M., Austin D.A., Blanch A.R., Grimont F., Grimont P.A.D., Joffre J., Koblavi S., Larsen J.L., Pedersen K., Tiainen T., Verdonck L., and Swings J. Identification and typing of Vibrio anguillarum: a comparison of different methods. Syst. Appl. Microbiol. 18 (1995) 285-302
2. Bidet P., Lalande V., Salauze B., Burghoffer B., Avesani V., Delmée M., Rossier A., Barbut F., and Petit J.C. Comparison of PCR-ribotyping, arbitrarily primed PCR, and pulsed-field gel electrophoresis for typing Clostridium difficile. J. Clin. Microbiol. 38 (2000) 2484-2487
3. Brock J.A., and LeaMaster B. A look at the principal bacterial, fungal and parasitic diseases of farmed shrimp. In: Wyban J. (Ed). Proceedings of the Special Session on Shrimp Farming (1992), World Aquaculture Society, Baton Rouge, LA 212-226
4. Chachaty E., Saulnier P., Martin A., Mario N., and Andremont A. Comparison of ribotyping, pulsed-field gel electrophoresis and random amplified polymorphic DNA for typing Clostridium difficile strains. FEMS Microbiol. Lett. 122 (1994) 61-68
5. Collier M.C., Stock F., DeGirolami P.C., Samore M.H., and Cartwright C.P. Comparison of PCR-based approaches to molecular epidemiologic analysis of Clostridium difficile. J. Clin. Microbiol. 34 (1996) 1153-1157
6. Costa R., Mermoud I., Koblavi S., Morlet B., Haffner P., Berthe F., Le Groumellec M., and Grimont P. Isolation and characterization of bacteria associated with a Penaeus stylirostris disease (Syndrome 93) in New Caledonia. Aquaculture 164 (1998) 297-309
7. DePaola A., Nordstrom J.L., Bowers J.C., Wells J.G., and Cook D.W. Seasonal abundance of total and pathogenic Vibrio parahaemolyticus in Alabama oysters. Appl. Environ. Microbiol. 69 (2003) 1521-1526
8. Ellsworth D.L., Rittenhouse K.D., and Honeycutt R.L. Artifactual variation in randomly amplified polymorphic DNA banding patterns. BioTechniques 14 (1993) 214-217
9. Galtier N., Gouy M., and Gautier C. Seaview and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12 (1996) 543-548
10. Gascuel O. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14 (1987) 685-695
11. C. Goarant, J. Herlin, D. Ansquer, F. Imbert, D. Domalain, A.L. Marteau, Épidémiologie de Vibrio nigripulchritudo dans le cadre du Syndrome d'été: résultats préliminaires du programme DESANS, in: C. Goarant, A. Herbland, Y. Harache, C. Mugnier (Eds.), Styli 2003, Trente ans de crevetticulture en Nouvelle-Calédonie, vol. 38, Ifremer Éd., Actes Colloq., 2004, pp. 210-215 (in French with English abstract).
12. C. Goarant, J. Herlin, D. Ansquer, R. Brizard, A.L. Marteau, Vibrio penaeicida and Syndrome 93 in New Caledonian prawn farming: review and perspectives, in: C. Goarant, A. Herbland, Y. Harache, C. Mugnier (Eds.), Styli 2003, Trente ans de crevetticulture en Nouvelle-Calédonie, vol. 38, Ifremer Éd., Actes Colloq., 2004, pp. 203-209 (in French with English abstract).
13. Goarant C., Herlin J., Brizard R., Marteau A.L., Martin C., and Martin B. Toxic factors of Vibrio strains pathogenic to shrimp. Dis. Aquat. Org. 40 (2000) 101-107
14. Goarant C., Mérien F., Berthe F., Mermoud I., and Pérolat P. Arbitrarily primed PCR to type Vibrio spp. pathogenic for shrimp. Appl. Environ. Microbiol. 65 (1999) 1145-1151
15. C. Goarant, D. Ansquer, J. Herlin, D. Domalain, F. Imbert, S. De Decker, "Summer Syndrome" in Litopenaeus stylirostris in New Caledonia: pathology and epidemiology of the etiological agent, Vibrio nigripulchritudo. Aquaculture, in press, published online 24 August 2005.
16. Hall T.A. BioitEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
17. Y. Harache, A. Herbland, Le programme DESANS (Défi Santé Stylirostris): une démarche comparable au Défi MOREST appliquée à la filière crevette Calédonienne, in: C. Goarant, A. Herbland, Y. Harache, C. Mugnier (Eds.), Styli 2003, Trente ans de crevetticulture en Nouvelle-Calédonie, vol. 38, Ifremer Éd., Actes Colloq., 2004, pp. 31-38 (in French with English abstract).
18. Jackson D.P., Hayden J.D., and Quirke P. Extraction of nucleic acid from fresh and archival material. In: McPherson M.J., Quirke P., and Taylor G.R. (Eds). PCR: a Practical Approach (1991), IRL Press at Oxford University Press, Oxford 29-49
19. Kautsky N., Ronnback P., Tedengren M., and Troell M. Ecosystem perspectives on management of disease in shrimp pond farming. Aquaculture 191 (2000) 145-161
20. Le Roux F., Goubet A., Thompson F.L., Faury N., Gay M., Swings J., and Saulnier D. Vibrio gigantis sp. nov., isolated from the haemolymph of cultured oysters (Crassostrea gigas). Int. J. Syst. Evol. Micr. 55 (2005) 2251-2255
21. Lightner D.V. Vibrio disease of penaeid shrimp. In: Sindermann C.J., and Lightner D.V. (Eds). Disease Diagnosis and Control in North American Marine Aquaculture (1998), Elsevier, Amsterdam 42-47
22. Lightner D.V., and Lewis D.H. A septicemic bacterial disease syndrome of penaeid shrimp. Mar. Fish. Rev. 37 (1975) 25-28
23. Lightner D.V., and Redman R.M. Shrimp diseases and current diagnostic methods. Aquaculture 164 (1998) 201-220
24. Maiden M.C., Bygraves J.A., Feil E., Morelli G., Russell J.E., Urwin R., Zhang Q., Zhou J., Zurth K., Caugant D.A., Feavers I.M., Achtman M., and Spratt B.G. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. USA 95 (1998) 3140-3145
25. Mermoud I., Costa R., Ferré O., Goarant C., and Haffner P. Syndrome 93 in New Caledonian outdoor rearing ponds of Penaeus stylirostris: history and description of the three major outbreaks. Aquaculture 164 (1998) 323-335
26. Mohney L.L., and Lightner D.V. An epizootic of vibriosis in Ecuadorian pond-reared Penaeus vannamei Boone (Crustacea: Decapoda). J. World Aquacult. Soc. 25 (1994) 116-125
27. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89 (1978) 583-590
28. O'Shea Y.A., Reen F.J., Quirke A.M., and Boyd E.F. Evolutionary genetic analysis of the emergence of epidemic Vibrio cholerae isolates on the basis of comparative nucleotide sequence analysis and multilocus virulence gene profiles. J. Clin. Microbiol. 42 (2004) 4657-4671
29. Perolat P., Merien F., Ellis W.A., and Baranton G. Characterization of Leptospira isolates from serovar hardjo by ribotyping, arbitrarily primed PCR, and mapped restriction site polymorphisms. J. Clin. Microbiol. 32 (1994) 1949-1957
30. Rosenberry B. World shrimp farming 2004 (2004), Shrimp News International, San Diego, CA
31. Saulnier D., Avarre J.C., Le Moullac G., Ansquer D., Levy P., and Vonau V. Rapid and sensitive PCR detection of Vibrio penaeicida, the putative etiological agent of Syndrome 93 in New Caledonia. Dis. Aquat. Org. 40 (2000) 109-115
32. Saulnier D., Haffner P., Goarant C., Levy P., and Ansquer D. Experimental infection models for shrimp vibriosis studies: a review. Aquaculture 191 (2000) 133-144
33. Schuur A.M. Evaluation of biosecurity applications for intensive shrimp farming. Aquacult. Eng. 28 (2003) 3-20
34. Smith V.J., Brown J.H., and Hauton C. Immunostimulation in crustaceans: does it really protect against infection?. Fish Shellfish Immunol. 15 (2003) 71-90
35. Stackebrandt E., and Embley T.M. Diversity of uncultured microorganisms in the environment. In: Cowell R.R., and Grimes D.J. (Eds). Nonculturable Microorganisms in the Environments (2000), ASM, Washington, DC 55-57
36. Takahashi Y., Shimomaya Y., and Momomaya K. Pathogenicity and characteristics of Vibrio sp. isolated from cultured kuruma prawns Penaeus japonicus Bate. Bull. Jpn. Soc. Sci. Fish. 51 (1985) 721-730
37. Thompson C.C., Thompson F.L., Vandemeulebroecke K., Hoste B., Dawyndt P., and Swings J. Use of recA as alternative phylogenetic marker in the family Vibrionaceae. Int. J. Syst. Evol. Microbiol. 54 (2004) 919-924
38. Vickery M.C.L., Smith A.L., DePaola A., Jones D.D., Steffan R.J., and Bej A.K. Optimization of the arbitrarily primed polymerase chain reaction (AP-PCR) for intra-species differentiation of Vibrio vulnificus. J. Microbiol. Methods 33 (1998) 181-189
39. Welsh J., and McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucl. Acids Res. 18 (1990) 7213-7218
40. M. Weppe, J.R. Bonami, D.V. Lightner, AQUACOP, Demostración de la altas cualidades de la cepa de P. stylirostris (AQUACOP SPR 43) resistente al virus IHHN, in: Escuela Superior Politécnica del Litoral (Eds.), Memorias I Congreso Ecuatoriano de acuicultura, Guayaquil, 1993, pp. 229-232 (in Spanish).
41. Yeh F.C., and Boyle T.J.B. Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg. J. Bot. 129 (1997) 157