-
1
-
-
44649132540
-
Host innate immune receptors and beyond: making sense of microbial infections
-
doi:10.1016/j.chom.2008.05.003
-
Ishii KJ, Koyama S, Nakagawa A, Coban C, Akira S, (2008) Host innate immune receptors and beyond: making sense of microbial infections. Cell Host Microbe 3: 352-363. doi:10.1016/j.chom.2008.05.003. PubMed: 18541212.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 352-363
-
-
Ishii, K.J.1
Koyama, S.2
Nakagawa, A.3
Coban, C.4
Akira, S.5
-
2
-
-
0033681250
-
Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter
-
doi:10.1016/S0092-8674(00)00169-0
-
Agalioti T, Lomvardas S, Parekh B, Yie J, Maniatis T, et al. (2000) Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter. Cell 103: 667-678. doi:10.1016/S0092-8674(00)00169-0. PubMed: 11106736.
-
(2000)
Cell
, vol.103
, pp. 667-678
-
-
Agalioti, T.1
Lomvardas, S.2
Parekh, B.3
Yie, J.4
Maniatis, T.5
-
3
-
-
77749242510
-
The transcriptional code of human IFN-beta gene expression
-
doi:10.1016/j.bbagrm.2010.01.010
-
Ford E, Thanos D, (2010) The transcriptional code of human IFN-beta gene expression. Biochim Biophys Acta 1799: 328-336. doi:10.1016/j.bbagrm.2010.01.010. PubMed: 20116463.
-
(2010)
Biochim Biophys Acta
, vol.1799
, pp. 328-336
-
-
Ford, E.1
Thanos, D.2
-
4
-
-
30944470262
-
Histone deacetylases as transcriptional activators? Role reversal in inducible gene regulation
-
re11
-
Nusinzon I, Horvath CM, (2005) Histone deacetylases as transcriptional activators? Role reversal in inducible gene regulation. Sci STKE: pp. 2005: re11.
-
(2005)
Sci STKE
, pp. 2005
-
-
Nusinzon, I.1
Horvath, C.M.2
-
5
-
-
33645812740
-
Positive and negative regulation of the innate antiviral response and beta interferon gene expression by deacetylation
-
doi:10.1128/MCB.26.8.3106-3113.2006
-
Nusinzon I, Horvath CM, (2006) Positive and negative regulation of the innate antiviral response and beta interferon gene expression by deacetylation. Mol Cell Biol 26: 3106-3113. doi:10.1128/MCB.26.8.3106-3113.2006. PubMed: 16581785.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 3106-3113
-
-
Nusinzon, I.1
Horvath, C.M.2
-
6
-
-
38849160013
-
Epstein-Barr virus latent membrane protein 1 induces cellular MicroRNA miR-146a, a modulator of lymphocyte signaling pathways
-
doi:10.1128/JVI.02136-07
-
Cameron JE, Yin Q, Fewell C, Lacey M, McBride J, et al. (2008) Epstein-Barr virus latent membrane protein 1 induces cellular MicroRNA miR-146a, a modulator of lymphocyte signaling pathways. J Virol 82: 1946-1958. doi:10.1128/JVI.02136-07. PubMed: 18057241.
-
(2008)
J Virol
, vol.82
, pp. 1946-1958
-
-
Cameron, J.E.1
Yin, Q.2
Fewell, C.3
Lacey, M.4
McBride, J.5
-
7
-
-
77956636732
-
Cellular microRNAs inhibit replication of the H1N1 influenza A virus in infected cells
-
doi:10.1128/JVI.00456-10
-
Song L, Liu H, Gao S, Jiang W, Huang W, (2010) Cellular microRNAs inhibit replication of the H1N1 influenza A virus in infected cells. J Virol 84: 8849-8860. doi:10.1128/JVI.00456-10. PubMed: 20554777.
-
(2010)
J Virol
, vol.84
, pp. 8849-8860
-
-
Song, L.1
Liu, H.2
Gao, S.3
Jiang, W.4
Huang, W.5
-
8
-
-
84864805493
-
Infection with street strain rabies virus induces modulation of the microRNA profile of the mouse brain
-
doi:10.1186/1743-422X-9-159
-
Zhao P, Zhao L, Zhang K, Feng H, Wang H, et al. (2012) Infection with street strain rabies virus induces modulation of the microRNA profile of the mouse brain. Virol J 9: 159. doi:10.1186/1743-422X-9-159. PubMed: 22882874.
-
(2012)
Virol J
, vol.9
, pp. 159
-
-
Zhao, P.1
Zhao, L.2
Zhang, K.3
Feng, H.4
Wang, H.5
-
9
-
-
84872166696
-
Respiratory syncytial virus regulates human microRNAs by using mechanisms involving beta interferon and NF-kappaB
-
Thornburg NJ, Hayward SL, Crowe JE Jr., (2012) Respiratory syncytial virus regulates human microRNAs by using mechanisms involving beta interferon and NF-kappaB. mBio 3.
-
(2012)
MBio
, vol.3
-
-
Thornburg, N.J.1
Hayward, S.L.2
Crowe Jr., J.E.3
-
10
-
-
35349009932
-
Interferon modulation of cellular microRNAs as an antiviral mechanism
-
doi:10.1038/nature06205
-
Pedersen IM, Cheng G, Wieland S, Volinia S, Croce CM, et al. (2007) Interferon modulation of cellular microRNAs as an antiviral mechanism. Nature 449: 919-922. doi:10.1038/nature06205. PubMed: 17943132.
-
(2007)
Nature
, vol.449
, pp. 919-922
-
-
Pedersen, I.M.1
Cheng, G.2
Wieland, S.3
Volinia, S.4
Croce, C.M.5
-
11
-
-
77951976180
-
miR-132 regulates antiviral innate immunity through suppression of the p300 transcriptional co-activator
-
doi:10.1038/ncb2054
-
Lagos D, Pollara G, Henderson S, Gratrix F, Fabani M, et al. (2010) miR-132 regulates antiviral innate immunity through suppression of the p300 transcriptional co-activator. Nat Cell Biol 12: 513-519. doi:10.1038/ncb2054. PubMed: 20418869.
-
(2010)
Nat Cell Biol
, vol.12
, pp. 513-519
-
-
Lagos, D.1
Pollara, G.2
Henderson, S.3
Gratrix, F.4
Fabani, M.5
-
12
-
-
68149165370
-
MicroRNA-146a feedback inhibits RIG-I-dependent Type I IFN production in macrophages by targeting TRAF6, IRAK1, and IRAK2
-
doi:10.4049/jimmunol.0900707
-
Hou J, Wang P, Lin L, Liu X, Ma F, et al. (2009) MicroRNA-146a feedback inhibits RIG-I-dependent Type I IFN production in macrophages by targeting TRAF6, IRAK1, and IRAK2. J Immunol 183: 2150-2158. doi:10.4049/jimmunol.0900707. PubMed: 19596990.
-
(2009)
J Immunol
, vol.183
, pp. 2150-2158
-
-
Hou, J.1
Wang, P.2
Lin, L.3
Liu, X.4
Ma, F.5
-
13
-
-
34447639973
-
Hypersusceptibility to vesicular stomatitis virus infection in Dicer1-deficient mice is due to impaired miR24 and miR93 expression
-
doi:10.1016/j.immuni.2007.05.014
-
Otsuka M, Jing Q, Georgel P, New L, Chen J, et al. (2007) Hypersusceptibility to vesicular stomatitis virus infection in Dicer1-deficient mice is due to impaired miR24 and miR93 expression. Immunity 27: 123-134. doi:10.1016/j.immuni.2007.05.014. PubMed: 17613256.
-
(2007)
Immunity
, vol.27
, pp. 123-134
-
-
Otsuka, M.1
Jing, Q.2
Georgel, P.3
New, L.4
Chen, J.5
-
14
-
-
60149088848
-
Origins and Mechanisms of miRNAs and siRNAs
-
doi:10.1016/j.cell.2009.01.035
-
Carthew RW, Sontheimer EJ, (2009) Origins and Mechanisms of miRNAs and siRNAs. Cell 136: 642-655. doi:10.1016/j.cell.2009.01.035. PubMed: 19239886.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
15
-
-
84934441954
-
In vitro RNA cleavage assay for Argonaute-family proteins
-
doi:10.1007/978-1-59745-191-8_3
-
Miyoshi K, Uejima H, Nagami-Okada T, Siomi H, Siomi MC, (2008) In vitro RNA cleavage assay for Argonaute-family proteins. Methods Mol Biol 442: 29-43. doi:10.1007/978-1-59745-191-8_3. PubMed: 18369776.
-
(2008)
Methods Mol Biol
, vol.442
, pp. 29-43
-
-
Miyoshi, K.1
Uejima, H.2
Nagami-Okada, T.3
Siomi, H.4
Siomi, M.C.5
-
16
-
-
77958050722
-
Mechanisms of control of microRNA biogenesis
-
20833630
-
Davis-Dusenbery BN, Hata A, (2010) Mechanisms of control of microRNA biogenesis. J Biochem 148: 381-392. PubMed: 20833630.
-
(2010)
J Biochem
, vol.148
, pp. 381-392
-
-
Davis-Dusenbery, B.N.1
Hata, A.2
-
17
-
-
78751477191
-
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
-
doi:10.1038/nrg2936
-
Huntzinger E, Izaurralde E, (2011) Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nat Rev Genet 12: 99-110. doi:10.1038/nrg2936. PubMed: 21245828.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 99-110
-
-
Huntzinger, E.1
Izaurralde, E.2
-
18
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
doi:10.1016/S0092-8674(04)00045-5
-
Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297. doi:10.1016/S0092-8674(04)00045-5. PubMed: 14744438.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
19
-
-
49949116902
-
The impact of microRNAs on protein output
-
doi:10.1038/nature07242
-
Baek D, Villén J, Shin C, Camargo FD, Gygi SP, et al. (2008) The impact of microRNAs on protein output. Nature 455: 64-71. doi:10.1038/nature07242. PubMed: 18668037.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villén, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
-
20
-
-
33645119514
-
MicroRNAs direct rapid deadenylation of mRNA
-
doi:10.1073/pnas.0510928103
-
Wu L, Fan J, Belasco JG, (2006) MicroRNAs direct rapid deadenylation of mRNA. Proc Natl Acad Sci U S A 103: 4034-4039. doi:10.1073/pnas.0510928103. PubMed: 16495412.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 4034-4039
-
-
Wu, L.1
Fan, J.2
Belasco, J.G.3
-
21
-
-
33645124258
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
-
doi:10.1126/science.1122689
-
Giraldez AJ, Mishima Y, Rihel J, Grocock RJ, Van Dongen S, et al. (2006) Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 312: 75-79. doi:10.1126/science.1122689. PubMed: 16484454.
-
(2006)
Science
, vol.312
, pp. 75-79
-
-
Giraldez, A.J.1
Mishima, Y.2
Rihel, J.3
Grocock, R.J.4
Van Dongen, S.5
-
22
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
doi:10.1038/nature03315
-
Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, et al. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773. doi:10.1038/nature03315. PubMed: 15685193.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
-
23
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
doi:10.1038/nature09267
-
Guo H, Ingolia NT, Weissman JS, Bartel DP, (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840. doi:10.1038/nature09267. PubMed: 20703300.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
24
-
-
25844442472
-
A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing
-
doi:10.1261/rna.2191905
-
Rehwinkel J, Behm-Ansmant I, Gatfield D, Izaurralde E, (2005) A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing. RNA 11: 1640-1647. doi:10.1261/rna.2191905. PubMed: 16177138.
-
(2005)
RNA
, vol.11
, pp. 1640-1647
-
-
Rehwinkel, J.1
Behm-Ansmant, I.2
Gatfield, D.3
Izaurralde, E.4
-
25
-
-
33747608638
-
NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses
-
doi:10.1073/pnas.0605298103
-
Taganov KD, Boldin MP, Chang KJ, Baltimore D, (2006) NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc Natl Acad Sci U S A 103: 12481-12486. doi:10.1073/pnas.0605298103. PubMed: 16885212.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12481-12486
-
-
Taganov, K.D.1
Boldin, M.P.2
Chang, K.J.3
Baltimore, D.4
-
26
-
-
84866065844
-
Influenza A Virus Infection of Human Respiratory Cells Induces Primary MicroRNA Expression
-
doi:10.1074/jbc.M112.387670
-
Buggele WA, Johnson KE, Horvath CM, (2012) Influenza A Virus Infection of Human Respiratory Cells Induces Primary MicroRNA Expression. J Biol Chem 287: 31027-31040. doi:10.1074/jbc.M112.387670. PubMed: 22822053.
-
(2012)
J Biol Chem
, vol.287
, pp. 31027-31040
-
-
Buggele, W.A.1
Johnson, K.E.2
Horvath, C.M.3
-
27
-
-
84855920255
-
A functional genomic screen reveals novel host genes that mediate interferon-alpha's effects against hepatitis C virus
-
doi:10.1016/S0168-8278(12)60848-4
-
Zhao H, Lin W, Kumthip K, Cheng D, Fusco DN, et al. (2012) A functional genomic screen reveals novel host genes that mediate interferon-alpha's effects against hepatitis C virus. J Hepatol 56: 326-333. doi:10.1016/S0168-8278(12)60848-4. PubMed: 21888876.
-
(2012)
J Hepatol
, vol.56
, pp. 326-333
-
-
Zhao, H.1
Lin, W.2
Kumthip, K.3
Cheng, D.4
Fusco, D.N.5
-
28
-
-
84867992474
-
Regulation of pro-inflammatory cytokines TNFα and IL24 by microRNA-203 in primary keratinocytes
-
doi:10.1016/j.cyto.2012.07.031
-
Primo MN, Bak RO, Schibler B, Mikkelsen JG, (2012) Regulation of pro-inflammatory cytokines TNFα and IL24 by microRNA-203 in primary keratinocytes. Cytokine 60: 741-748. doi:10.1016/j.cyto.2012.07.031. PubMed: 22917968.
-
(2012)
Cytokine
, vol.60
, pp. 741-748
-
-
Primo, M.N.1
Bak, R.O.2
Schibler, B.3
Mikkelsen, J.G.4
-
29
-
-
84881219431
-
MicroRNA profiling of Sendai virus-infected A549 cells identifies miR-203 as an interferon-inducible regulator of IFIT1/ISG56
-
doi:10.1128/JVI.01064-13
-
Buggele WA, Horvath CM, (2013) MicroRNA profiling of Sendai virus-infected A549 cells identifies miR-203 as an interferon-inducible regulator of IFIT1/ISG56. J Virol 87: 9260-9270. doi:10.1128/JVI.01064-13. PubMed: 23785202.
-
(2013)
J Virol
, vol.87
, pp. 9260-9270
-
-
Buggele, W.A.1
Horvath, C.M.2
-
30
-
-
77956273847
-
Estimates of Deaths Associated with Seasonal Influenza-Unites States: 1976-2007
-
Control CfD
-
Control CfD, (2010). Estimates of Deaths Associated with Seasonal Influenza-Unites States: 1976-2007. MMWR 59: 1057-1062.
-
(2010)
MMWR
, vol.59
, pp. 1057-1062
-
-
-
31
-
-
0018703697
-
Are the 5' ends of influenza viral mRNAs synthesized in vivo donated by host mRNAs?
-
doi:10.1016/0092-8674(79)90052-7
-
Krug RM, Broni BA, Bouloy M, (1979) Are the 5' ends of influenza viral mRNAs synthesized in vivo donated by host mRNAs? Cell 18: 329-334. doi:10.1016/0092-8674(79)90052-7. PubMed: 498272.
-
(1979)
Cell
, vol.18
, pp. 329-334
-
-
Krug, R.M.1
Broni, B.A.2
Bouloy, M.3
-
32
-
-
54449099369
-
The multifunctional NS1 protein of influenza A viruses
-
doi:10.1099/vir.0.2008/004606-0
-
Hale BG, Randall RE, Ortín J, Jackson D, (2008) The multifunctional NS1 protein of influenza A viruses. J Gen Virol 89: 2359-2376. doi:10.1099/vir.0.2008/004606-0. PubMed: 18796704.
-
(2008)
J Gen Virol
, vol.89
, pp. 2359-2376
-
-
Hale, B.G.1
Randall, R.E.2
Ortín, J.3
Jackson, D.4
-
33
-
-
65549164536
-
Influenza A virus NS1 targets the ubiquitin ligase TRIM25 to evade recognition by the host viral RNA sensor RIG-I
-
doi:10.1016/j.chom.2009.04.006
-
Gack MU, Albrecht RA, Urano T, Inn KS, Huang IC, et al. (2009) Influenza A virus NS1 targets the ubiquitin ligase TRIM25 to evade recognition by the host viral RNA sensor RIG-I. Cell Host Microbe 5: 439-449. doi:10.1016/j.chom.2009.04.006. PubMed: 19454348.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 439-449
-
-
Gack, M.U.1
Albrecht, R.A.2
Urano, T.3
Inn, K.S.4
Huang, I.C.5
-
34
-
-
84855231262
-
Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection
-
[MedlinePgn:] PubMed: 22086488
-
Peng X, Gralinski L, Ferris MT, Frieman MB, Thomas MJ, et al. (2011) Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection. mBio 2([MedlinePgn:]) PubMed: 22086488.
-
(2011)
MBio
, vol.2
-
-
Peng, X.1
Gralinski, L.2
Ferris, M.T.3
Frieman, M.B.4
Thomas, M.J.5
-
35
-
-
77649119525
-
MicroRNA expression and virulence in pandemic influenza virus-infected mice
-
doi:10.1128/JVI.02203-09
-
Li Y, Chan EY, Li J, Ni C, Peng X, et al. (2010) MicroRNA expression and virulence in pandemic influenza virus-infected mice. J Virol 84: 3023-3032. doi:10.1128/JVI.02203-09. PubMed: 20071585.
-
(2010)
J Virol
, vol.84
, pp. 3023-3032
-
-
Li, Y.1
Chan, E.Y.2
Li, J.3
Ni, C.4
Peng, X.5
-
36
-
-
80355131980
-
Differential microRNA expression and virulence of avian, 1918 reassortant, and reconstructed 1918 influenza A viruses
-
21999992
-
Li Y, Li J, Belisle S, Baskin CR, Tumpey TM, et al. (2011) Differential microRNA expression and virulence of avian, 1918 reassortant, and reconstructed 1918 influenza A viruses. Virology 421: 105-113. PubMed: 21999992.
-
(2011)
Virology
, vol.421
, pp. 105-113
-
-
Li, Y.1
Li, J.2
Belisle, S.3
Baskin, C.R.4
Tumpey, T.M.5
-
37
-
-
84876269314
-
Host microRNA molecular signatures associated with human H1N1 and H3N2 influenza A viruses reveal an unanticipated antiviral activity for miR-146a
-
doi:10.1099/vir.0.049528-0
-
Terrier O, Textoris J, Carron C, Marcel V, Bourdon JC, et al. (2013) Host microRNA molecular signatures associated with human H1N1 and H3N2 influenza A viruses reveal an unanticipated antiviral activity for miR-146a. J Gen Virol 94: 985-995. doi:10.1099/vir.0.049528-0. PubMed: 23343627.
-
(2013)
J Gen Virol
, vol.94
, pp. 985-995
-
-
Terrier, O.1
Textoris, J.2
Carron, C.3
Marcel, V.4
Bourdon, J.C.5
-
38
-
-
0025183708
-
Basic local alignment search tool
-
doi:10.1016/S0022-2836(05)80360-2
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410. doi:10.1016/S0022-2836(05)80360-2. PubMed: 2231712.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
39
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
doi:10.1093/bioinformatics/19.2.185
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193. doi:10.1093/bioinformatics/19.2.185. PubMed: 12538238.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
40
-
-
84876581893
-
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation
-
doi:10.1093/nar/gks1147
-
Breuer K, Foroushani AK, Laird MR, Chen C, Sribnaia A, et al. (2013) InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation. Nucleic Acids Res 41: D1228-D1233. doi:10.1093/nar/gks1147. PubMed: 23180781.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Breuer, K.1
Foroushani, A.K.2
Laird, M.R.3
Chen, C.4
Sribnaia, A.5
-
41
-
-
51049113607
-
InnateDB: facilitating systems-level analyses of the mammalian innate immune response
-
18766178
-
Lynn DJ, Winsor GL, Chan C, Richard N, Laird MR, et al. (2008) InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Mol Syst Biol 4: 218. PubMed: 18766178.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 218
-
-
Lynn, D.J.1
Winsor, G.L.2
Chan, C.3
Richard, N.4
Laird, M.R.5
-
42
-
-
79551587720
-
Cytoscape 2.8: new features for data integration and network visualization
-
doi:10.1093/bioinformatics/btq675
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T, (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27: 431-432. doi:10.1093/bioinformatics/btq675. PubMed: 21149340.
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
43
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
doi:10.1016/j.cell.2004.12.035
-
Lewis BP, Burge CB, Bartel DP, (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20. doi:10.1016/j.cell.2004.12.035. PubMed: 15652477.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
44
-
-
79959805164
-
miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes
-
doi:10.1016/j.jbi.2011.05.002
-
Dweep H, Sticht C, Pandey P, Gretz N, (2011) miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes. J Biomed Inform 44: 839-847. doi:10.1016/j.jbi.2011.05.002. PubMed: 21605702.
-
(2011)
J Biomed Inform
, vol.44
, pp. 839-847
-
-
Dweep, H.1
Sticht, C.2
Pandey, P.3
Gretz, N.4
-
45
-
-
79952068189
-
Influenza A virus expresses high levels of an unusual class of small viral leader RNAs in infected cells
-
[MedlinePgn:] PubMed: 20842206
-
Umbach JL, Yen HL, Poon LL, Cullen BR, (2010) Influenza A virus expresses high levels of an unusual class of small viral leader RNAs in infected cells. mBio 1([MedlinePgn:]) PubMed: 20842206.
-
(2010)
MBio
, vol.1
-
-
Umbach, J.L.1
Yen, H.L.2
Poon, L.L.3
Cullen, B.R.4
-
46
-
-
77954912141
-
Influenza A virus-generated small RNAs regulate the switch from transcription to replication
-
doi:10.1073/pnas.1001984107
-
Perez JT, Varble A, Sachidanandam R, Zlatev I, Manoharan M, et al. (2010) Influenza A virus-generated small RNAs regulate the switch from transcription to replication. Proc Natl Acad Sci U S A 107: 11525-11530. doi:10.1073/pnas.1001984107. PubMed: 20534471.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 11525-11530
-
-
Perez, J.T.1
Varble, A.2
Sachidanandam, R.3
Zlatev, I.4
Manoharan, M.5
-
47
-
-
77957997708
-
Preference of RIG-I for short viral RNA molecules in infected cells revealed by next-generation sequencing
-
doi:10.1073/pnas.1005077107
-
Baum A, Sachidanandam R, García-Sastre A, (2010) Preference of RIG-I for short viral RNA molecules in infected cells revealed by next-generation sequencing. Proc Natl Acad Sci U S A 107: 16303-16308. doi:10.1073/pnas.1005077107. PubMed: 20805493.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 16303-16308
-
-
Baum, A.1
Sachidanandam, R.2
García-Sastre, A.3
-
48
-
-
33746055678
-
mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes
-
Behm-Ansmant I, Rehwinkel J, Doerks T, Stark A, Bork P, et al. (2006) mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes Genes Dev 20: 1885-1898.
-
(2006)
Genes Dev
, vol.20
, pp. 1885-1898
-
-
Behm-Ansmant, I.1
Rehwinkel, J.2
Doerks, T.3
Stark, A.4
Bork, P.5
-
49
-
-
33750324764
-
Negative and positive regulation of gene expression by mouse histone deacetylase 1
-
doi:10.1128/MCB.01220-06
-
Zupkovitz G, Tischler J, Posch M, Sadzak I, Ramsauer K, et al. (2006) Negative and positive regulation of gene expression by mouse histone deacetylase 1. Mol Cell Biol 26: 7913-7928. doi:10.1128/MCB.01220-06. PubMed: 16940178.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 7913-7928
-
-
Zupkovitz, G.1
Tischler, J.2
Posch, M.3
Sadzak, I.4
Ramsauer, K.5
-
50
-
-
3142721913
-
Requirement of histone deacetylase activity for signaling by STAT1
-
doi:10.1074/jbc.M401359200
-
Klampfer L, Huang J, Swaby LA, Augenlicht L, (2004) Requirement of histone deacetylase activity for signaling by STAT1. J Biol Chem 279: 30358-30368. doi:10.1074/jbc.M401359200. PubMed: 15123634.
-
(2004)
J Biol Chem
, vol.279
, pp. 30358-30368
-
-
Klampfer, L.1
Huang, J.2
Swaby, L.A.3
Augenlicht, L.4
-
51
-
-
84855373185
-
Opposed regulation of type I IFN-induced STAT3 and ISGF3 transcriptional activities by histone deacetylases (HDACS) 1 and 2
-
21957129
-
Icardi L, Lievens S, Mori R, Piessevaux J, De Cauwer L, et al. (2012) Opposed regulation of type I IFN-induced STAT3 and ISGF3 transcriptional activities by histone deacetylases (HDACS) 1 and 2. FASEB J 26: 240-249. PubMed: 21957129.
-
(2012)
FASEB J
, vol.26
, pp. 240-249
-
-
Icardi, L.1
Lievens, S.2
Mori, R.3
Piessevaux, J.4
De Cauwer, L.5
-
52
-
-
78650637976
-
Differential requirement of histone acetylase and deacetylase activities for IRF5-mediated proinflammatory cytokine expression
-
doi:10.4049/jimmunol.1000482
-
Feng D, Sangster-Guity N, Stone R, Korczeniewska J, Mancl ME, et al. (2010) Differential requirement of histone acetylase and deacetylase activities for IRF5-mediated proinflammatory cytokine expression. J Immunol 185: 6003-6012. doi:10.4049/jimmunol.1000482. PubMed: 20935208.
-
(2010)
J Immunol
, vol.185
, pp. 6003-6012
-
-
Feng, D.1
Sangster-Guity, N.2
Stone, R.3
Korczeniewska, J.4
Mancl, M.E.5
-
53
-
-
0344304443
-
Interferon-stimulated transcription and innate antiviral immunity require deacetylase activity and histone deacetylase 1
-
doi:10.1073/pnas.2433987100
-
Nusinzon I, Horvath CM, (2003) Interferon-stimulated transcription and innate antiviral immunity require deacetylase activity and histone deacetylase 1. Proc Natl Acad Sci U S A 100: 14742-14747. doi:10.1073/pnas.2433987100. PubMed: 14645718.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 14742-14747
-
-
Nusinzon, I.1
Horvath, C.M.2
-
54
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
doi:10.1038/nature07228
-
Selbach M, Schwanhäusser B, Thierfelder N, Fang Z, Khanin R, et al. (2008) Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63. doi:10.1038/nature07228. PubMed: 18668040.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhäusser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
-
55
-
-
0037095769
-
Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays
-
doi:10.1093/nar/30.10.e48
-
Yuen T, Wurmbach E, Pfeffer RL, Ebersole BJ, Sealfon SC, (2002) Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res 30: e48. doi:10.1093/nar/30.10.e48. PubMed: 12000853.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yuen, T.1
Wurmbach, E.2
Pfeffer, R.L.3
Ebersole, B.J.4
Sealfon, S.C.5
-
56
-
-
78649846540
-
MicroRNA-449a levels increase by several orders of magnitude during mucociliary differentiation of airway epithelia
-
21088493
-
Lizé M, Herr C, Klimke A, Bals R, Dobbelstein M, (2010) MicroRNA-449a levels increase by several orders of magnitude during mucociliary differentiation of airway epithelia. Cell Cycle 9: 4579-4583. PubMed: 21088493.
-
(2010)
Cell Cycle
, vol.9
, pp. 4579-4583
-
-
Lizé, M.1
Herr, C.2
Klimke, A.3
Bals, R.4
Dobbelstein, M.5
-
57
-
-
76749102887
-
E2F1-inducible microRNA 449a/b suppresses cell proliferation and promotes apoptosis
-
doi:10.1038/cdd.2009.188
-
Lizé M, Pilarski S, Dobbelstein M, (2010) E2F1-inducible microRNA 449a/b suppresses cell proliferation and promotes apoptosis. Cell Death Differ 17: 452-458. doi:10.1038/cdd.2009.188. PubMed: 19960022.
-
(2010)
Cell Death Differ
, vol.17
, pp. 452-458
-
-
Lizé, M.1
Pilarski, S.2
Dobbelstein, M.3
-
58
-
-
79954507936
-
miR-449a causes Rb-dependent cell cycle arrest and senescence in prostate cancer cells
-
20948989
-
Noonan EJ, Place RF, Basak S, Pookot D, Li LC,. (2010) miR-449a causes Rb-dependent cell cycle arrest and senescence in prostate cancer cells. Oncotarget 1: 349-358. PubMed: 20948989.
-
(2010)
Oncotarget
, vol.1
, pp. 349-358
-
-
Noonan, E.J.1
Place, R.F.2
Basak, S.3
Pookot, D.4
Li, L.C.5
-
59
-
-
64949190804
-
miR-449a targets HDAC-1 and induces growth arrest in prostate cancer
-
doi:10.1038/onc.2009.19
-
Noonan EJ, Place RF, Pookot D, Basak S, Whitson JM, et al. (2009) miR-449a targets HDAC-1 and induces growth arrest in prostate cancer. Oncogene 28: 1714-1724. doi:10.1038/onc.2009.19. PubMed: 19252524.
-
(2009)
Oncogene
, vol.28
, pp. 1714-1724
-
-
Noonan, E.J.1
Place, R.F.2
Pookot, D.3
Basak, S.4
Whitson, J.M.5
|