Enriching for microbial reductive dechlorination of polychlorinated dibenzo-p-dioxins and dibenzofurans

Environmental Pollution

Volumn 184, Issue , 2014, Pages 222-230

  Liu, Hui ^a   Park, Joong Wook ^a   Häggblom, Max M ^a  

^a The State University of New Jersey   (United States)

Author keywords

Anaerobic dechlorination; Chlorodibenzofurans; Dehalococcoides; Sediment

Indexed keywords

ANAEROBIC DECHLORINATION; CHLORODIBENZOFURANS; DEHALOCOCCOIDES; MICROBIAL REDUCTIVE DECHLORINATION; OCTACHLORODIBENZOFURAN; PENTACHLORONITROBENZENE (P CNB); POLYCHLORINATED DIBENZO-P-DIOXINS AND DIBENZOFURANS; REDUCTIVE DEHALOGENASES;

ANOXIC SEDIMENTS; BIOREMEDIATION; SEDIMENTS;

DECHLORINATION;

1,2,3,4 TETRACHLORODIBENZO 4 DIOXIN; 1,2,3,4 TETRACHLORODIBENZOFURAN; 1,2,3,4,5,6,7,8 OCTACHLORODIBENZOFURAN; POLYCHLORINATED DIBENZODIOXIN; POLYCHLORINATED DIBENZOFURAN; QUINTOZENE; UNCLASSIFIED DRUG;

BIOREMEDIATION; DECHLORINATION; GENE; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; RIVER POLLUTION; RIVER WATER; SEDIMENT ANALYSIS; STRATEGIC APPROACH; WATER CHEMISTRY; WATER QUALITY;

ARTICLE; BACTERIAL GENE; BIOREMEDIATION; CHLOROFLEXI; CONTROLLED STUDY; DECHLORINATION; DEHALOCOCCOIDES; DEHALOCOCCOIDES MCCARTYI; ENRICHMENT CULTURE; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; REDUCTION; REDUCTIVE DEHALOGENASE GENE; SEDIMENT;

FINLAND; KYMIJOKI RIVER;

ANAEROBIC DECHLORINATION; CHLORODIBENZOFURANS; DEHALOCOCCOIDES; SEDIMENT;

BENZOFURANS; BIODEGRADATION, ENVIRONMENTAL; CHLOROFLEXI; GEOLOGIC SEDIMENTS; RIVERS; TETRACHLORODIBENZODIOXIN; WATER MICROBIOLOGY;

EID: 84884601395     PISSN: 02697491     EISSN: 18736424     Source Type: Journal    
DOI: 10.1016/j.envpol.2013.08.019     Document Type: Article

References (41)

1. P. Adriaens, Q. Fu, and D. Grbic-Galic Bioavailability and transformation of highly chlorinated dibenzo-p-dioxins and dibenzofurans in anaerobic soils and sediments Environ. Sci. Technol. 29 1995 2252 2260 10.1021/es00009a015
2. P. Adriaens, and D. Grbic-Galic Reductive dechlorination of PCDD/F by anaerobic cultures and sediments Chemosphere 29 1994 2253 2259 10.1016/0045-6535(94)90392-1 (Pubitemid 124010207)
3. Y.B. Ahn, M.M. Häggblom, and D.E. Fennell Co-amendment with halogenated compounds enhances anaerobic microbial dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin and 1,2,3,4-tetrachlorodibenzofuran in estuarine sediments Environ. Toxicol. Chem. 24 2005 2775 2784 10.1897/05-010R.1 (Pubitemid 41500774)
4. Y.B. Ahn, M.M. Häggblom, and L.J. Kerkhof Comparison of anaerobic microbial communities from estuarine sediments amended with halogenated compounds to enhance dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin FEMS Microbiol. Ecol. 61 2007 362 371 10.1111/j.1574-6941.2007.00342.x (Pubitemid 47083940)
5. Y.B. Ahn, F. Liu, D.E. Fennell, and M.M. Häggblom Biostimulation and bioaugmentation to enhance dechlorination of PCDD in contaminated sediments FEMS Microbiol. Ecol. 66 2008 271 281 10.1111/j.1574-6941.2008.00557.x
6. I.D. Albrecht, A.L. Barkovskii, and P. Adriaens Production and dechlorination of 2,3,7,8-tetrachlorodibenzo-p-dioxin in historically- contaminated estuarine sediments Environ. Sci. Technol. 33 1999 737 744 10.1021/es980791t (Pubitemid 29122395)
7. S.F. Altschul, T.L. Madden, A.A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search program Nucleic Acids Res. 25 1997 3389 3402 10.1093/nar/25.17.3389 (Pubitemid 27359211)
8. A.L. Barkovskii, and P. Adriaens Microbial dechlorination of historically present and freshly spiked chlorinated dioxins and diversity of dioxin-dechlorinating populations Appl. Environ. Microbiol. 62 1996 4556 4562
9. H. Ballerstedt, J. Hantke, M. Bunge, B. Werner, J. Gerritse, J.R. Andreesen, and U. Lechner Properties of a trichlorodibenzo-p-dioxin- dechlorinating mixed culture with a Dehalococcoides as putative dechlorinating species FEMS Microbiol. Ecol. 47 2004 223 234 10.1016/S0168-6496(03)00282-4 (Pubitemid 38180558)
10. H. Ballerstedt, A. Kraus, and U. Lechner Reductive dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin and its products by anaerobic mixed cultures from Saale River Sediment Envrion. Sci. Technol. 31 1997 1749 1753 10.1021/es960737h (Pubitemid 27241989)
11. D.L. Bedard, K.M. Ritalahti, and F.E. Loffler The Dehalococcoides population in sediment-free mixed cultures metabolically dechlorinates the commercial polychlorinated biphenyl mixture Aroclor 1260 Appl. Environ. Microbiol. 73 2007 2513 2521 10.1128/AEM.02909-06 (Pubitemid 46668743)
12. J.E.M. Beurskens, and P.B.M. Stortelder Microbial transformation of PCBs in sediments: what can we learn to solve practical problems? Water Sci. Technol. 31 1995 99 107 10.1016/0273-1223(95)00361-P
13. M. Bunge, L. Adrian, A. Kraus, M. Opel, W.G. Lorenz, J.R. Andreesen, H. Görisch, and U. Lechner Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium Nature 421 2003 357 360 10.1038/nature01237 (Pubitemid 36157930)
14. M. Bunge, H. Ballerstedt, and U. Lechner Regiospecific dechlorination of spiked tetra- and trichlorodibenzo-p-dioxins by anaerobic bacteria from PCDD/F-contaminated Spittelwasser sediments Chemosphere 43 2001 675 681 10.1016/S0045-6535(00)00420-3 (Pubitemid 32405517)
15. M. Bunge, and U. Lechner Anaerobic reductive dehalogenation of polychlorinated dioxins Appl. Microbiol. Biotechnol. 84 2009 429 444 10.1007/s00253-009-2084-7
16. M. Bunge, A. Wagner, M. Fischer, J.R. Andreesen, and U. Lechner Enrichment of a dioixn-dehalogenating Dehalococcoides species in two-liquid phase cultures Environ. Microbiol. 10 2008 2670 2683 10.1111/j.1462-2920.2008. 01688.x
17. S.K. Fagervold, D. May, and K.R. Sowers Microbial reductive dechlorination of Aroclor 1260 in Baltimore Harbor sediment microcosms is catalyzed by three phylotypes within the Phylum Chloroflexi Appl. Environ. Microbiol. 73 2007 3009 3018 10.1128/AEM.02958-06 (Pubitemid 46718585)
18. D.E. Fennell, I. Nijenhuis, S.F. Wilson, S.H. Zinder, and M.M. Häggblom Dehalococcoides ethenogenes strain 195 reductively dechlorinate diverse chlorinated aromatic pollutants Environ. Sci. Technol. 38 2004 2075 2081 10.1021/es034989b (Pubitemid 38468808)
19. C.L. Gruden, Q.S. Fu, A.L. Barkovskii, I.D. Albrecht, M.M. Lynam, and P. Adrians Dechlorination of sediment dioxins: catalysts, mechanisms, and implications for remedial strategies and dioxin cycling M.M. Häggblom, I.D. Bossert, Dehalogenation: Microbial Processes and Environmental Applications 2003 Kluwer Academic Publishers Boston, MA 347 372
20. M.M. Häggblom, Y.B. Ahn, D.E. Fennell, L.J. Kerkhof, and S.K. Rhee Anaerobic dehalogenation of organohalide contaminants in the marine environment Adv. Appl. Microbiol. 53 2003 61 84 (Pubitemid 37523042)
21. M.D. Hale, F.D. Hileman, T. Mazer, T.L. Shell, R.W. Noble, and J.J. Brooks Mathematical modeling of temperature programmed capillary gas chromatographic retention indexes for polychlorinated dibenzofuran Anal. Chem. 57 1985 640 648 10.1021/ac00280a017 (Pubitemid 15115675)
22. E.R. Hendrickson, J.A. Payne, R.M. Young, M.G. Starr, M.P. Perry, S. Fahnestock, D.E. Ellis, and R.C. Ebersole Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe Appl. Environ. Microbiol. 68 2002 485 495 10.1128/AEM.68.2.485-495. 2002 (Pubitemid 34113032)
23. T. Hölscher, R. Krajmalnik-Brown, K. Ritalahti, F. von Wintzingerode, H. Görisch, F. Löffler, and L. Adrian Multiple nonidentical reductive-dehalogenase-homologous genes are common in Dehalococcoides Appl. Environ. Microbiol. 70 2004 5290 5297 10.1128/AEM.70.9. 5290-5297.2004 (Pubitemid 39279602)
24. V. Krumins, J.-W. Park, E.K. Son, L.A. Rodenburg, L.J. Kerkhof, M.M. Häggblom, and D.E. Fennell PCB dechlorination enhancement in Anacostia River sediment microcosms Water Res. 43 2009 4549 4558 10.1016/j.watres.2009.08. 003
25. M. Kube, A. Beck, S. Zinder, H. Kuhl, R. Reinhardt, and L. Adrian Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1 Nat. Biotechnol. 23 2005 1269 1273 10.1038/nbt1131 (Pubitemid 41486854)
26. F. Liu, D. Cichocka, I. Nijenhuis, H. Richnow, and D.E. Fennell Carbon isotope fractionation during dechlorination of 1,2,3,4-tetrachlorodibenzo-p- dioxin by a Dehalococcoides-containing culture Chemosphere 80 2010 1113 1119 10.1016/j.chemosphere.2010.06.027
27. F. Liu, and D.E. Fennell Dechlorination and detoxification of 1,2,3,4,7,8-hexa-CDF by a mixed culture containing Dehalococcoides ethenogenes strain 195 Environ. Sci. Technol. 42 2008 602 607 10.1021/es071380s (Pubitemid 351461915)
28. H. Liu, J.-W. Park, D.E. Fennell, L.A. Rodenburg, and M.M. Häggblom Microbially mediated reductive dechlorination of weathered polychlorinated dibenzofurans in Kymijoki sediment mesocosms Chemosphere 91 2013 212 221 10.1016/j.chemosphere.2012.12.056
29. O. Malve, S. Salo, M. Verta, and J. Forsius Modeling the transport of PCDD/F compounds in a contaminated river and the possible influence of restoration dredging on calculated fluxes Environ. Sci. Technol. 37 2003 3413 3421 10.1021/es0260723 (Pubitemid 36935643)
30. P.J. McMurdie, L.A. Hug, E.A. Edwards, S. Holmes, and A.M. Spormann Site-Specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides BMC Genomics 12 2011 287 302 10.1186/1471-2164-12-287
31. 3CDF on DB-5MS-Column and some aspects regarding air sampling Organohalogen Compd. 50 2001 198 201
32. J.-W. Park, V. Krumins, B.V. Kjellerup, D.E. Fennell, L.A. Rodenburg, K.R. Sowers, L.J. Kerkhof, and M.M. Häggblom The effect of cosubstrate-activation on indigenous and bioaugmented PCB dechlorinating bacterial communities in sediment microcosms Appl. Microbiol. Biotechnol. 89 2011 2005 2017 10.1007/s00253-010-2958-8
33. S. Salo, M. Verta, O. Malve, M. Korhonen, J. Lehtoranta, H. Kiviranta, P. Isosaari, P. Ruokojärvi, J. Koistinen, and T. Vartiainen Contamination of River Kymijoki sediments with polychlorinated dibenzo-p-dioxins, dibenzofurans and mercury and their transport to the Gulf of Finland in the Baltic Sea Chemosphere 73 2008 1675 1683 10.1016/j.chemosphere.2008.07.085
34. R. Seshadri, L. Adrian, D.E. Fouts, J.A. Eisen, A.M. Philippy, B.A. Methe, N.L. Ward, W.C. Nelson, R.T. Deboy, H.M. Khouri, J.F. Kolonay, R.J. Dodson, S.C. Daugherty, L.M. Brinkac, S.A. Sullivan, R. Madupu, K.E. Nelson, K.H. Kang, M. Impraim, K. Tran, J.M. Robinson, H.A. Forberger, C.M. Fraser, S.H. Zinder, and J.F. Heidelberg Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes Science 307 2005 105 108 10.1126/science.1102226 (Pubitemid 40093488)
35. K. Tamura, J. Dudley, M. Nei, and S. Kumar MEGA4: molecular evolutionary generic analysis (MEGA) software version 4.0 Mol. Biol. Evol. 24 2007 1596 1599 10.1093/molbev/msm092 (Pubitemid 47236692)
36. D.O. Tas, and S.G. Pavlostathis Microbial reductive transformation of pentachloronitrobenzene under methanogenic conditions Environ. Sci. Technol. 39 2005 8264 8272 10.1021/es050407+ (Pubitemid 41572411)
37. C. Vargas, D.E. Fennell, and M.M. Häggblom Anaerobic reductive dechlorination of chlorinated dioxins in estuarine sediments Appl. Microbiol. Biotechnol. 57 2001 786 790 10.1007/s00253-001-0830-6 (Pubitemid 34028279)
38. M. Verta, J. Lehtoranta, S. Salo, M. Korhonen, and H. Kiviranta High concentration of PCDD and PCDF in river Kymijoki sediments, south-eastern Finland, caused by wood preservative Ky-5 Organohalogen Compd. 43 1999 61 64
39. T. Yan, T.M. LaPara, and P.J. Novak The effect of varying levels of sodium bicarbonate on polychlorinated biphenyl dechlorination in Hudson River sediment cultures Environ. Microbiol. 8 2006 1288 1298 10.1111/j.1462-2920.2006. 01037.x (Pubitemid 43901759)
40. T. Yan, T.M. Lapara, and P.J. Novak The reductive dechlorination of 2,3,4,5-tetrachlorobiphenyl in three different sediment cultures: evidence for the involvement of phylogenetically similar Dehalococcoides-like bacterial populations FEMS Microbiol. Ecol. 55 2006 248 261 10.1111/j.1574-6941.2005. 00022.x
41. N. Yoshida, N. Takahashi, and A. Hiraishi Phylogenetic characterization of a polychlorinated-dioxin-dechlorinating microbial community by use of microcosm studies Appl. Environ. Microbiol. 71 2005 4325 4334 10.1128/AEM.71.8.4325-4334.2005 (Pubitemid 41129483)