Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)

Molecular Phylogenetics and Evolution

Volumn 69, Issue 3, 2013, Pages 728-739

  Botero Castro, Fidel ^a   Tilak, Marie ka ^a   Justy, Fabienne ^a   Catzeflis, François ^a   Delsuc, Frédéric ^a   Douzery, Emmanuel J P ^a  

^a INSTITUT DES SCIENCES DE L EVOLUTION   (France)

Author keywords

Chiroptera; Evolution; Illumina; Mitogenomics; Nuclear DNA

Indexed keywords

CHIROPTERA; MAMMALIA; MORMOOPIDAE; PHYLLOSTOMIDAE;

CELL NUCLEUS DNA; ILLUMINA;

ANIMAL; ARTICLE; BAT; BAYES THEOREM; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; EVOLUTION; GENETIC MARKER; GENETICS; METHODOLOGY; MITOCHONDRIAL GENOME; MITOGENOMICS; MOLECULAR EVOLUTION; PHYLOGENY; STATISTICAL MODEL;

CHIROPTERA; EVOLUTION; ILLUMINA; MITOGENOMICS; NUCLEAR DNA;

ANIMALS; BAYES THEOREM; CELL NUCLEUS; CHIROPTERA; EVOLUTION, MOLECULAR; GENETIC MARKERS; GENOME, MITOCHONDRIAL; LIKELIHOOD FUNCTIONS; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 84884591564     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2013.07.003     Document Type: Article

References (96)

1. Aird D., Ross M.G., Chen W.-S., Danielsson M., Fennell T., Russ C., Jaffe D.B., Nusbaum C., Gnirke A. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol. 2011, 12:R18.
2. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 1990, 215:403-410.
3. Baker R.J., Bleier W.J. Karyotypes of bats of the subfamily Carolliinae (Mammalia; Phyllostomatidae) and their evolutionary implications. Experientia 1971, 7:220-222.
4. Baker, R.J., Porter, C.A., Patton, J.C., Van Den Bussche, R.A., 2000. Systematics of bats of the family Phyllostomidae based on RAG2 DNA sequences. Occas. Papers Mus. Texas Tech Univ. 202, i+1-16.
5. Baker, R.J., Hoofer, S.R., Porter, C.A., Van Den Bussche, R.A., 2003. Diversification among New World leaf-nosed bats: An evolutionary hypothesis and classification inferred form digenomic congruence of DNA sequence Occas. Papers Mus. Texas Tech Univ. 230, i+1-32.
6. Baker R.J., Bininda-Emonds O.R.P., Mantilla-Meluk H., Porter C.A., Van Den Bussche R.A. Molecular timescale of diversification of feeding strategy and morphology in New World leaf-nosed bats (Phyllostomidae): a phylogenetic perspective. Evolutionary History of Bats: Fossils, Molecules and Morphology 2012, 385-409. Cambridge University Press, Cambridge. G.F. Gunnell, N.B. Simmons (Eds.).
7. Cahais V., Gayral P., Tsagkogeorga G., Melo-Ferreira J., Ballenghien M., Weinert L., Chiari Y., Belkhir K., Ranwez V., Galtier N. Reference-free transcriptome assembly in non-model animals from next-generation sequencing data. Mol. Ecol. Res. 2012, 12:834-845.
8. Castoe T.A., Jiang Z.J., Gu W., Wang Z.O., Pollock D.D. Adaptive evolution and functional redesign of core metabolic proteins in snakes. PLoS ONE 2008, 3:e2201.
9. Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
10. Catzeflis F.M. Animal tissue collections for molecular genetics and systematics. Trends Ecol. Evol. 1991, 6:168.
11. Clare E.L., Lim B.K., Engstrom M.D., Eger J.L., Hebert P.D.N. DNA barcoding of neotropical bats: species identification and discovery within Guyana. Mol. Ecol. Notes 2007, 7:184-190.
12. Cooper A., Mourer-Chauviré C., Chambers G.K., von Haeseler A., Wilson A.C., Pääbo S. Independent origins of New Zealand moas and kiwis. Proc. Natl. Acad. Sci. 1992, 89:8741-8744.
13. Datzmann T., von Helversen O., Mayer F. Evolution of nectarivory in phyllostomid bats (Phyllostomidae Gray, 1825, Chiroptera: Mammalia). BMC Evol. Biol. 2010, 10:165.
14. Dávalos, L.M., Corthals, A., 2008. A new species of Lonchophylla (Chiroptera: Phyllostomidae) from the eastern Andes of northwestern South America. Am. Mus. Novit. 3635.
15. Dávalos L.M., Jansa S.A. Phylogeny of the Lonchophyllini (Chiroptera: Phyllostomidae). J. Mammal. 2004, 85:404-413.
16. Dávalos L.M., Cirranello A.L., Geisler J.H., Simmons N.B. Understanding phylogenetic incongruence. lessons from phyllostomid bats. Biol. Rev. 2012, 87:991-1024.
17. de Queiroz A., Gatesy J. The supermatrix approach to systematics. Trends Ecol. Evol. 2007, 22:34-41.
18. Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T., Wilson, A., 2011. Geneious v5.5. < http://www.geneious.com/.
19. Edgar R.C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5:113.
20. Enk J., Devault A., Debruyne R., King C.E., Treangen T., O'Rourke D., Salzberg S.L., Fisher D., MacPhee R., Poinar H. Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths. Genome Biol. 2011, 12:R51.
21. Foote A.D., Morin P.A., Durban J.W., Pitman R.L., Wade P., Willerslev E., Gilbert M.T.P., de Fonseca R.R. Positive selection on the killer whale mitogenome. Biol. Lett. 2011, 7:116-118.
22. Fuke S., Kubota-Sakashita M., Kasahara T., Shigeyoshi Y., Kato T. Regional variation in mitochondrial DNA copy number in mouse brain. Biochim. Biophys. Acta 2011, 1807:270-274.
23. Gadagkar S.R., Rosenberg M.S., Kumar S. Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. J. Exp. Zool. (Mol. Dev. Evol.) 2005, 304B:64-74.
24. Galtier N., Nabholz B., Glémin S., Hurst G.D.D. Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol. Ecol. 2009, 18:4541-4550.
25. Gouy M., Guindon S., Gascuel O. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 2010, 27:221-224.
26. Gregorin R., Ditchfield A.D. New genus and species of nectar-feeding bat in the tribe Lonchophyllini (Phyllostomidae: Glossophaginae) from Northeastern Brazil. J. Mammal. 2005, 86:403-414.
27. Haddrath O., Baker A.J. Complete mitochondrial DNA genome sequence of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis. Proc. Roy. Soc. Lond. B 2001, 268:939-945.
28. Hassanin A., Bonillo C., Nguyen B.X., Cruaud C. Comparisons between mitochondrial genomes of domestic goat (Capra hircus) reveal the presence of numts and multiple sequencing errors. Mitochondrial DNA 2010, 21:68-76.
29. Hassanin A., Delsuc F., Ropiquet A., Hammer C., Jansen van Vuuren B., Matthee C., Ruiz-Garcia M., Catzeflis F., Areskoug V., Nguyen T.T., Couloux A. Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes. CR Biol. 2012, 335:32-50.
30. Hoffmann F.G., Hoofer S.R., Baker R.J. Molecular dating of the diversification of Phyllostominae bats based on nuclear and mitochondrial DNA sequences. Mol. Phylogenet. Evol. 2008, 49:653-658.
31. Hoofer S.R., Baker R.J. Molecular systematics of Vampyressine bats (Phyllostomidae: Stenodermatinae) with comparison of direct and indirect surveys of mitochondrial DNA variation. Mol. Phylogenet. Evol. 2006, 39:424-438.
32. Hoofer S.R., Reeder S.A., Hansen E.W., Van Den Bussche R.A. Molecular phylogenetics and taxonomic review of noctilionoid and vespertilionoid bats (Chiroptera: Yangochiroptera). J. Mammal. 2003, 84:809-821.
33. Hoofer S.R., Flanary W.E., Bull R.J., Baker R.J. Phylogenetic relationships of vampyressine bats and allies (Phyllostomidae: Stenodermatinae) based on DNA sequences of a nuclear intron (TSHB-I2). Mol. Phylogenet. Evol. 2008, 47:870-876.
34. Hoofer, S.R., Solari, S., Larsen, P.A., Bradley, R.D., Baker, A.J., 2008b. Phylogenetics of the fruit-eating bats (Phyllostomidae: Artibeina) inferred from mitochondrial DNA sequences. Occas. Papers. Mus. Tex. Tech. Univ. 277.
35. Huang X., Madan A. CAP3: A DNA sequence assembly program. Genome Res. 1999, 9:868-877.
36. Jiang Z.J., Castoe T.A., Austin C.C., Burbrink F.T., Herron M.D., McGuire J.A., Parkinson C.L., Pollock D.D. Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region. BMC Evol. Biol. 2007, 7:123.
37. Krause, J., Unger, T., Noçon, A., Malaspinas, A.-S., Kolokotronis, S.-O., Stiller, M., Soibelzon, L., Spriggs, H., Dear, P.H., Briggs, A.W., Bray, S.C., O'Brien, S.J., Rabeder, G., Matheus, P., Cooper, A., Slatkin, M., Páábo, S., Hofreiter, M., 2008. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evol. Biol. 8, 220.
38. Larsen P.A., Marchán-Rivadeneira M.R., Baker R.J. Taxonomic status of Andersen's fruit-eating bat (Artibeus jamaicensis aequatorialis) and revised classification of Artibeus (Chiroptera: Phyllostomidae). Zootaxa 2010, 2648:45-60.
39. Larsen P.A., Marchán-Rivadeneira M.R., Baker R.J. Natural hibridization generates mammalian lineage with species characteristics. Proc. Natl. Acad. Sci. 2010, 107:11447-11452.
40. Larsen P.A., Siles L., Pedersen S.C., Kwiecinski G.G. A new species of Micronycteris (Chiroptera: Phyllostomidae) from Saint Vincent, Lesser Antilles. Mammal. Biol. 2011, 76:687-700.
41. Lartillot N., Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol. Biol. Evol. 2004, 21:1095-1109.
42. Lartillot N., Lepage T., Blanquart S. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 2009, 25:2286-2288.
43. Lim B.K. Differentiation and species status of the Neotropical yellow-eared bats Vampyressa pusilla and V. thyone (Phyllostomidae) with a molecular phylogeny and review of the genus. Acta Chiropterologica 2003, 5:15-29.
44. Mantilla-Meluk, H., Baker, R.J., 2010. New species of Anoura (Chiroptera: Phyllostomidae) from Colombia, with systematic remarks and notes on the distribution of the A. geoffroyi complex. Occas. Papers. Mus. Tex. Tech. Univ., 292.
45. Maricic T., Whitten M., Pääbo S. Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS ONE 2010, 5:e14004.
46. Mason V.C., Li G., Helgen K.M., Murphy W.J. Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens. Genome Res. 2011, 21:1695-1704.
47. McCarthy T.J., Albuja V.L., Alberico M.S. A new species of chocoan Sturnira (Chiroptera: Phyllostomidae: Stendermatinae) from western Ecuador and Colombia. Annls. Carnegie Mus. 2006, 75:97-110.
48. Meganathan P.R., Pagan H.J.T., McCulloch E.S., Stevens R.D., Ray D.A. Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera. Gene 2012, 492:121-129.
49. Miller W., Drautz D.I., Janecka J.E., Lesk A.M., Ratan A., Tomsho L.P., Packard M., Zhang Y., McClellan L.R., Qi J., Zhao F., Gilbert T.P., Dalén L., Arsuaga J.L., Ericson P.G.P., Huson D.H., Helgen K.M., Murphy W.J., Götherström A., Schuster S.C. The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). Genome Res. 2009, 19:213-220.
50. Moore W.S. Inferring Phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 1995, 49:718-726.
51. Muchhala N., Mena V.P., Albuja V.L. A new species of Anoura (Chiroptera: Phyllostomidae) form the Ecuadorian Andes. J. Mammal. 2005, 86:457-461.
52. Nabholz B., Glemin S., Galtier N. Strong variations of mitochondrial mutation rate across mammals - the longevity hypothesis. Mol. Biol. Evol. 2008, 25:120-130.
53. Nabholz B., Ellegren H., Wolf J.B.W. High levels of gene expression explain the strong evolutionary constraint of mitochondrial protein-coding genes. Mol. Biol. Evol. 2013, 30:272-284.
54. Nakamura K., Oshima T., Morimoto T., Ikeda S., Yoshikawa H., Shiwa Y., Ishikawa S., Linak M.C., Hirai A., Takahashi H., Altaf-Ul-Amin M., Ogasawara N., Kanaya S. Sequence-specific error profile of Illumina sequencers. Nucl. Acids Res. 2011, 39:e90.
55. Nesi N., Nakouné E., Cruaud C., Hassanin A. DNA barcoding of African fruit bats (Mammalia, Pteropodidae). The mitochondrial genome does not provide a reliable discrimination between Epomophorus gambianus and Micropteropus pusillus. C R Biol. 2011, 334:544-554.
56. Philippe H. MUST: a computer package of management utilities for sequences and trees. Nucl. Acids Res. 1993, 21:5264-5272.
57. Porter C.A., Baker R.J. Systematics of Vampyressa and related genera of phyllostomid bats as determined by cytochrome-b sequences. J. Mammal. 2004, 85:126-132.
58. Porter C.A., Hoofer S.R., Van Den Bussche R.A., Lee T.E., Baker R.J. Systematics of round-eared bats (Tonatia and Lophostoma) based on nuclear and mitochondrial DNA sequences. J. Mammal. 2003, 84:791-808.
59. Powell A.F.L., Barker F.K., Lanyon S.M. Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data. Mol. Phylogenet. Evol. 2013, 66:69-79.
60. Pumo, D.E., Finamore, P.S., Franek, W.R., Phillips, C.J., Tarzami, S., Balzarano, D., 1998. Complete mitochondrial genome of a neotropical fruit bat, Artibeus jamaicensis, and a new hypothesis of the relationships of bats to other Eutherian mammals. J. Mol. Evol. 47, 709-717.
61. Ranwez V., Delsuc F., Ranwez S., Belkhir K., Tilak M., Douzery E.J.P. OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics. BMC Evol. Biol. 2007, 7:241.
62. Redondo R.A.F., Brina L.P.S., Silva R.F., Ditchfield A.D., Santos F.R. Molecular systematics of the genus Artibeus (Chiroptera: Phyllostomidae). Mol. Phylogenet. Evol. 2008, 49:44-58.
63. Reyes A., Gissi C., Pesole G., Saccone C. Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. Mol. Biol. Evol. 1998, 15:957-966.
64. Richly E., Leister D. NUMTs in sequenced eukaryotic genomes. Mol. Biol. Evol. 2004, 21:1081-1084.
65. Robin E.D., Wong R. Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells. J. Cell. Phys. 1988, 136:507-513.
66. Rohland N., Malaspinas A.S., Pollack J.L., Slatkin M., Matheus P., Hofreiter M. Proboscidean mitogenomics: Chronology and mode of elephant evolution using mastodon as outgroup. PLoS Biol. 2007, 5:e207.
67. Rojas D., Vale A., Ferrero V., Navarro L. When did plants become important to leaf-nosed bats? Diversification of feeding habits in the family Phyllostomidae. Mol. Ecol. 2011, 20:2217-2228.
68. Rowe K.C., Singhal S., Macmanes M.D., Ayroles J.F., Morelli T.L., Rubidge E.M., Bi K., Moritz C.C. Museum genomics: low-cost and high-accuracy genetic data from historical specimens. Mol. Ecol. Resour. 2011, 11:1082-1092.
69. Rubinstein N.D., Feldstein T., Shenkar N., Botero-Castro F., Griggio F., Mastrototaro F., Delsuc F., Douzery E.J.P., Gissi C., Huchon D. Deep sequencing of mixed total DNA without barcodes allows efficient assembly of highly plastic Ascidian mitochondrial genomes. Genome Biol. Evol. 2013, 10.1093/gbe/evt1081.
70. Sánchez-Gracia A., Castresana J. Impact of deep coalescence on the reliability of species tree inference from different types of DNA markers in Mammals. PLoS ONE 2012, 7:e30239.
71. Simmons N.B. Order Chiroptera. Mammal species of the world: a taxonomic and geographic reference 2005, 312-529. Johns Hopkins University Press, Baltimore. third ed. D.E. Wilson, D.M. Reeder (Eds.).
72. Simpson J.T., Wong K., Jackman S.D., Schein J.E., Jones S.J.M., Birol I. ABySS: A parallel assembler for short read sequence data. Genome Res. 2009, 19:1117-1123.
73. Solari, S., Baker, R.J., 2006. Mitochondrial DNA sequence, karyotipic, and morphological variation in the Carollia castanea species complex (Chiroptera: Phyllostomidae) with a description of a new species. Occas. Papers. Mus. Tex. Tech. Univ., 254.
74. Solari S., Hoofer S.R., Larsen P.A., Brown A.D., Bull R.J., Guerrero J.A., Ortega J., Carrera J.P., Bradley R.D., Baker R.J. Operational criteria for genetically defined species: analysis of the diversification of the small fruit-eating bats, Dermanura (Phyllostomidae: Stenodermatinae). Acta Chiropterol. 2009, 11:279-288.
75. Stanhope M.J., Czelusniak J., Si J.-S., Nickerson J., Goodman M. A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Mol. Phylogenet. Evol. 1992, 1:148-160.
76. Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
77. Taddei V.A., Lim B.K. A new species of Chiroderma (Chiroptera: Phyllostomidae) from Northeastern Brazil. Braz. J. Biol. 2010, 70:381-386.
78. Teeling E.C., Madsen O., Van Den Bussche R.A., de Jong W.W., Stanhope M.J., Springer M.S. Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats. Proc. Natl. Acad. Sci. USA 2002, 99:1431-1436.
79. Teeling, E.C., Madsen, O., Murphy, W.J., Springer, M.S., O'Brien, S.J., 2003. Nuclear gene sequences confirm an ancient link between New Zealand's short-tailed bat and South American noctilionoid bats. Mol. Phylogenet. Evol. 28, 308-319.
80. Teeling E.C., Springer M.S., Madsen O., Bates P., O'Brien S.J., Murphy W.J. A molecular phylogeny for bats illuminates biogeography and the fossil record. Science 2005, 307:580-584.
81. Thomas W.K., Pääbo S., Villablanca F.X., Wilson A.C. Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens. J. Mol. Evol. 1990, 31:101-112.
82. Timmermans M.J., Dodsworth S., Culverwell C.L., Bocak L., Ahrens D., Littlewood D.T., Pons J., Vogler A.P. Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics. Nucl. Acids Res. 2010, 38:e197.
83. Tomasco I.H., Lessa E.P. The evolution of mitochondrial genomes in subterranean caviomorph rodents: Adaptation against a background of purifying selection. Mol. Phylogenet. Evol. 2011, 61:64-70.
84. Velazco, P.M., 2005. Morphological phylogeny of the bat genus Platyrrhinus Saussure, 1860 (Chiroptera: Phyllostomidae) with the description of four new species. Fieldiana: Zoology, N.S. 105, 1-54.
85. Velazco P.M., Simmons N.B. Systematics and taxonomy of great striped faced-bats of the genus Vampyrodes Thomas, 1900 (Chiroptera: Phyllostomidae). Am. Mus. Novit. 2011, 3710.
86. Velazco P.M., Gardner A.L., Patterson B.D. Systematics of the Platyrrhinus helleri species complex (Chiroptera: Phyllostomidae), with descriptions of two new species. Zool. J. Linn. Soc. 2010, 159:785-812.
87. Veltri K.L., Espiritu M., Singh G. Distinct genomic copy number in mitochondria of different mammalian organs. J. Cell. Phys. 1990, 143:160-164.
88. Vilstrup J.T., Ho S.Y., Foote A.D., Morin P.A., Kreb D., Krützen M., Parra G.J., Robertson K.M., de Stephanis R., Verborgh P., Willerslev E., Orlando L., Gilbert M.T.P. Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae. BMC Evol. Biol. 2011, 11:65.
89. Wada K., Okumura K., Nishibori M., Kikkawa Y., Yokohama M. The complete mitochondrial genome of the domestic red deer (Cervus elaphus) of New Zealand and its phylogenic position within the family Cervidae. Anim. Sci. J. 2010, 81:551-557.
90. Wang, W., Wei, Z., Lam, T.-W., Wang, J., 2011. Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions. Sci. Rep. 1, srep00055.
91. Wetterer A.L., Rockman M.V., Simmons N.B. Phylogeny of phyllostomid bats (Mammalia: Chiroptera): data from diverse morphological systems, sex chromosomes, and restriction sites. Bull. Am. Mus. Nat. Hist. 2000, 248:1-200.
92. Willerslev E., Gilbert M.T.P., Binladen J., Ho S.Y., Campos P.F., Ratan A., Tomsho L.P., de Fonseca R.R., Sher A., Kuznetsova T.V., Nowak-Kemp M., Roth T.L., Miller W., Schuster S.C. Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution. BMC Evol. Biol. 2009, 9:95.
93. Woodman N. A new species of nectar-feeding bat, genus Lonchophylla, from western Colombia and western Ecuador (Mammalia: Chiroptera: Phyllostomidae). Proc. Biol. Soc. Wash. 2007, 120:340-358.
94. Wright A.J., van Den Bussche R.A., Lim B.K., Engstrom M.D., Baker R.J. Systematics of the genera Carollia and Rhinophylla based on the cytochrome-B gene. J. Mammal. 1999, 80:1202-1213.
95. Yu L., Peng D., Liu J., Luan P., Liang L., Lee H., Lee M., Ryder O.A., Zhang Y. On the phylogeny of Mustelidae subfamilies: analysis of seventeen nuclear non-coding loci and mitochondrial complete genomes. BMC Evol. Biol. 2011, 11:92.
96. Yu L., Wang X., Ting N., Zhang Y. Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation. Mitochondrion 2011, 11:497-503.