The complete mitochondrial genome of the domestic red deer (Cervus elaphus) of New Zealand and its phylogenic position within the family Cervidae

Animal Science Journal

Volumn 81, Issue 5, 2010, Pages 551-557

  Wada, Kenta ^a   Okumura, Kazuhiro ^b   Nishibori, Masahide ^c   Kikkawa, Yoshiaki ^a   Yokohama, Michinari ^a  

^a Department of Bioproduction   (Japan)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

^c HIROSHIMA UNIVERSITY   (Japan)

Author keywords

Mitochondrial genome; Phylogenetic analysis; Red deer

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; DEER; DOMESTIC ANIMAL; GENETICS; MITOCHONDRIAL GENOME; NEW ZEALAND; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ANIMALS; ANIMALS, DOMESTIC; BASE SEQUENCE; DEER; DNA, MITOCHONDRIAL; GENOME, MITOCHONDRIAL; NEW ZEALAND; PHYLOGENY;

CERVIDAE; CERVINAE; CERVUS ELAPHUS; CERVUS NIPPON; MAMMALIA; MUNTIACINAE;

EID: 77957114651     PISSN: 13443941     EISSN: 17400929     Source Type: Journal    
DOI: 10.1111/j.1740-0929.2010.00799.x     Document Type: Article

References (34)

1. Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young IG. Sequence and organization of the human mitochondrial genome. Nature 1981, 9:457-465.
2. Anderson S, de Bruijn MH, Coulson AR, Eperon IC, Sanger F, Young IG. Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome. Journal of Molecular Biology 1982, 25:683-717.
3. Bibb MJ, Van Etten RA, Wright CT, Walberg MW, Clayton DA. Sequence and gene organization of mouse mitochondrial DNA. Cell 1981, 26:167-180.
4. Cook CE, Wang Y, Sensabaugh G. A mitochondrial control region and cytochrome b phylogeny of Sika deer (Cervus nippon) and report of tandem repeats in the control region. Molecular Phylogenetics and Evolution 1999, 12:47-56.
5. Cronin MA, Stuart R, Pierson BJ, Patton JC. Kappa-Casein Gene Phylogeny of Higher Ruminants (Pecora, Artiodactyla). Molecular Phylogenetics and Evolution 1996, 6:295-311.
6. Geist V. Deer of the World, Their Evolution, Behavior, and Ecology 1998, Stackpole Books, Mechanicsburg
7. Gilbert C, Ropiquet A, Hassanin A. Mitochondrial and nuclear phylogenies of Cervidae (Mammalia, Ruminantia): Systematics, morphology, and biogeography. Molecular Phylogenetics and Evolution 2006, 40:101-117.
8. Groves CP, Grubb P. Relationships of living deer. Biology and Management of the Cervidae 1987, 21-59. Wemmer CM, In, ed., Smithsonian Inst. Press, Washington, DC
9. Gu Z, Zhao X, Li N, Wu C. Complete sequence of the yak (Bos grunniens) mitochondrial genome and its evolutionary relationship with other ruminants. Molecular Phylogenetics and Evolution 2007, 42:248-255.
10. Hasegawa M. Molecular Phylogenetics 1996, Iwanami-syoten, Tokyo
11. Hiendleder S, Mainz K, Plante Y, Lewalski H. Analysis of mitochondrial DNA indicates that domestic sheep are derived from two different ancestral maternal sources: no evidence for contributions from urial and argali sheep. The Journal of heredity 1998, 2:113-120.
12. Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 2001, 17:754-755.
13. Hughes S, Hayden TJ, Douady CJ, Tougard C, Germonpré M, Stuart A, Lbova L, Carden RF, Hänni C, Say L. Molecular phylogeny of the extinct giant deer, Megaloceros giganteus. Molecular Phylogenetics and Evolution 2006, 40:285-291.
14. Kim KS, Lee SE, Jeong HW, Ha JH. The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome. Molecular Phylogenetics and Evolution 1998, 10:210-220.
15. Kuwayama R, Ozawa T. Phylogenetic relationships among European red deer, Wapiti, and Sika deer inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 2000, 15:115-123.
16. Ludt CJ, Schroeder W, Rottmann O, Kuehn R. Mitochondrial DNA phylogeography of red deer (Cervus elaphus). Molecular Phylogenetics and Evolution 2004, 31:1064-1083.
17. Miyamoto MM, Kraus F, Ryder OA. Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1990, 87:6127-6131.
18. Nishibori M, Hayashi T, Tsudzuki M, Yamamoto Y, Yasue H. Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Animal Genetics 2001, 32:380-385.
19. Nishibori M, Tsudzuki M, Hayashi T, Yamamoto Y, Yasue H. Complete nucleotide sequence of the Coturnix chinensis (blue-breasted quail) mitochondrial genome and a phylogenetic analysis with related species. Journal of Heredity 2002, 93:439-444.
20. Parma P, Erra-Pujada M, Feligini M, Greppi G, Enne G. Water buffalo (Bubalus bubalis): complete nucleotide mitochondrial genome sequence. DNA Sequence 2004, 15:369-373.
21. Parma P, Feligini M, Greeppi G, Enne G. The complete nucleotide sequence of goat (Capra hircus) mitochondrial genome. Goat mitochondrial genome. DNA Sequence 2003, 14:199-203.
22. Pitra C, Fickel J, Meijaard E, Groves PC. Evolution and phylogeny of old world deer. Molecular Phylogenetics and Evolution 2004, 33:880-895.
23. Polziehn RO, Strobeck C. Phylogeny of Wapiti, Red deer, Sika deer, and other North American Cervids as determined from mitochondrial DNA. Molecular Phylogenetics and Evolution 1998, 10:249-258.
24. Polziehn RO, Strobeck C. A phylogenetic comparison of Red deer and Wapiti using mitochondrial DNA. Molecular Phylogenetics and Evolution 2002, 22:342-356.
25. Randi E, Mucci N, Claro-Hergueta F, Bonnet A, Douzery EJP. A mitochondrial DNA control region phylogeny of the Cervinae: speciation in Cervus and implications for conservation. Animal Conservation 2001, 4:1-11.
26. Randi E, Mucci N, Pierpaoli M, Douzery E. New phylogenetic perspectives on the Cervidae (Artiodactyla) are provided by the mitochondrial cytochrome b gene. Proceedings of the Royal Society of London. Series B, Containing papers of a Biological character. Royal Society (Great Britain) 1998, 265:793-801.
27. Ronquist F, Huelsenbeck JP. MRBAYES 3: Bayesian phylogenetic inference under mixedmodels. Bioinformatics 2003, 19:1572-1574.
28. Sambrook J, Russell DW. Molecular Cloning-A Laboratory Manual 2000, 3rd, edn., Cold Spring Habor Laboratory Press, Cold Spring Harbor, NewYork, USA
29. Ursing BM, Arnason U. The complete mitochondrial DNA sequence of the pig (Sus scrofa). Journal of Molecular Evolution. 1998, 47:302-306.
30. Wada K, Nishibori M, Yokohama M. The complete nucleotide sequence of mitochondrial genome in the Japanese Sika deer (Cervus nippon), and a phylogenetic analysis between Cervidae and Bovidae. Small Ruminant Research 2007, 69:46-54.
31. Whitehead GK. The Encyclopedia of Deer 1993, Swan Hill Press, Shrewsbury, UK
32. Xu X, Arnason U. The complete mitochondrial DNA sequence of the horse, Equus caballus: extensive heteroplasmy of the control region. Gene 1994, 21:357-362.
33. Xu X, Gullberg A, Arnason U. The complete mitochondrial DNA (mtDNA) of the donkey and mtDNA comparisons among four closely related mammalian species-pairs. Journal Molecular Evolution 1996, 43:438-446.
34. Yerex D. DEER The New Zealand Story 2001, Canterbury University Press, Christchurch, New Zealand