Phylogeography of the sand dollar genus Mellita: Cryptic speciation along the coasts of the Americas

Molecular Phylogenetics and Evolution

Volumn 69, Issue 3, 2013, Pages 1033-1042

  Coppard, Simon E ^a   Zigler, Kirk S ^a,b   Lessios, H A ^a  

^a SMITHSONIAN TROPICAL RESEARCH INSTITUTE   (Panama)

^b UNIVERSITY OF THE SOUTH   (United States)

Author keywords

Divergence; Leodia; Mellita; Phylogeny; Speciation

Indexed keywords

CLYPEASTEROIDA; LEODIA; MELLITA; MELLITA QUINQUIESPERFORATA; MELLITA TENUIS;

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA; RNA 16S; RNA 28S;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CELL NUCLEUS; CLASSIFICATION; DIVERGENCE; DNA SEQUENCE; FOSSIL; GENETICS; LEODIA; MELLITA; PHYLOGENY; PHYLOGEOGRAPHY; SEA URCHIN; SPECIES DIFFERENTIATION; STATISTICAL MODEL;

DIVERGENCE; LEODIA; MELLITA; PHYLOGENY; SPECIATION;

ANIMALS; BAYES THEOREM; CELL NUCLEUS; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; FOSSILS; GENETIC SPECIATION; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; PHYLOGENY; PHYLOGEOGRAPHY; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 28S; SEA URCHINS; SEQUENCE ANALYSIS, DNA;

EID: 84884591359     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2013.05.028     Document Type: Article

References (74)

1. Agassiz L. Des Scutelles. Monographies des Echinoderms Vivans et Fossiles. Monograph 1841, 2:1-151.
2. Akaike H. A new look at the statistical model identification. IEEE Transactions on Automatic Control 1974, 19:716-723.
3. Andrade C.A., Barton E.D. The Guajira upwelling system. Continental Shelf Research 2005, 25(9):1003-1022.
4. Avise J.C. Phylogeography: The History and Formation of Species 2000, Harvard University Press, Cambridge, MA, 447 pp.
5. Blainville, H.M.D. de, 1825. Oursins. In: Dictionnaire des Sciences Naturelles 37. p. 95. F.G. Levrault, Strasbourg, Paris. Budd A.F. and Johnson K.G., Origination preceding extinction during late Cenozoic turnover of Caribbean reefs, Paleobiology 25, 1999, 188-200.
6. Budd A.F., Johnson K.G. Origination preceding extinction during late Cenozoic turnover of Caribbean reefs. Paleobiology 1999, 25:188-200.
7. Caldwell, J.W., 1972. Development, Metamorphosis and Substrate Selection of the Sand Dollar Mellita quinquiesperforata (Leske, 1778). MSc Thesis, University of Florida. 163 pp.
8. Caso M.E. Contribución al estudio de los Echinozoa de México. La Familia Mellitidae Stefanini. Descriptión de una nueva especie del género Mellita. Mellita eduardobarrosoi sp. nov. Anales del Centro de Ciencias del Mar y Limnologia Universidad Nacional Autónoma de México 1980, 7:141-180.
9. Cerame-Vivas M.J., Gray I.E. The Presence of a sixth lunule in the sand dollar, Mellita quinquiesperforata. Bulletin of Marine Science 1964, 14:303-305.
10. Cheetham A.H., Jackson J.B.C. Speciation, extinction, and the decline of arborescent growth in Neogene and Quaternary cheilostome Bryozoa of tropical America. Evolution and Environment in Tropical America 1996, 205-233. University of Chicago Press, Chicago, IL. J.B.C. Jackson, A.G. Coates, A. Budd (Eds.).
11. Clark H.L. Revision of the keyhole urchins (Mellita). Proceedings of the United States National Museum 1940, 89:435-444.
12. Clark H.L. A new and remarkable keyhole urchin, Mellita notabilis n. sp. Bulletin of the Southern California Academy of Sciences 1947, 46:77-78.
13. Coates A.G., Obando J.A. The geologic evolution of the Central American Isthmus. Evolution and Environment in Tropical America 1996, 21-56. University of Chicago Press, Chicago, IL. J.B.C. Jackson, A.G. Coates, A. Budd (Eds.).
14. Coates A.G., Aubry M.P., Berggren W.A., Collins L.S., Kunk M. Early Neogene history of the Central American arc from Bocas del Toro, western Panama. Geological Society of America Bulletin 2003, 115:271-287.
15. Collins L.S. Environmental changes in Caribbean shallow waters relative to the closing tropical American seaway. Evolution and Environment in Tropical America 1996, 130-167. University of Chicago Press, Chicago, IL. J.B.C. Jackson, A.G. Coates, A. Budd (Eds.).
16. Collins L.S., Coates A.G., Berggen W.A., Aubry M.P., Zhang J. The late Miocene Panama isthmian strait. Geology 1996, 24(8):687-690.
17. Darriba D., Taboada G.L., Doallo R., Posada D. JModelTest 2: more models, new heuristics and parallel computing. Nature Methods 2012, 9:772.
18. Drummond A.J., Suchard M.A., Xie D., Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 2012, 29:1969-1973.
19. Durham J.W. The Echinoid Mellita in the Pacific Coast Cenozoic. Contributions in Science Los Angeles County Museum 1961, 48:3-12.
20. Excoffier L., Lischer H.E.L. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 2010, 10:564-567.
21. Folmer O., Black M., Hoeh W., Lutz R., Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 1994, 3:294-297.
22. Gelman A., Rubin D.B. Inference from iterative simulation using multiple sequences. Statistical Science 1992, 7:457-511.
23. Gray J.E. Description of two new genera and new species of Scutellidae and Echinolampidae in the collection of the British Museum. Proceeding of the Zoological Society of London 1851, 19:34-38.
24. Harold A.S., Telford M. Systematics, phylogeny and biogeography of the genus Mellita (Echinoidea: Clypeasteroida). Journal of Natural History 1990, 24:987-1026.
25. Haug G.H., Tiedemann R. Effect of the formation of the Isthmus of Panama on Atlantic Ocean thermohaline circulation. Nature 1998, 393:673-676.
26. Jagadeeshan S., O'Dea A. Integrating fossils and molecules to study cupuladriid evolution in an emerging isthmus. Evolutionary Ecology 2011, 26(2):337-355.
27. Jackson J.B.C., Jung P., Coates A.G., Collins L.S. Diversity and extinction of tropical American molluscs and emergence of the Isthmus of Panama. Science 1993, 260:1624-1626.
28. Johnson K.G., Todd J.A., Jackson J.B.C. Coral reef development drives molluscan diversity increase at local and regional scales in the late Neogene and Quaternary of the southwestern Caribbean. Paleobiology 2007, 33:24-52.
29. Johnson K.G., Jackson J.B.C., Budd A.F. Caribbean reef development was independent of coral diversity over 28 million years. Science 2008, 319:1521-1523.
30. Jones D.S., MacFadden B.J., Webb S.D., Mueller P.A., Hodell D.A., Cronin T.M. Integrated geochronology of a classic Pliocene fossil site in Florida: linking marine and terrestrial biochronologies. The Journal of Geology 1991, 637-648.
31. Keigwin L.D. Isotopic paleoceanography of the Caribbean and east Pacific: role of Panama uplift in Late Neogene time. Science 1982, 217:350-353.
32. Kessing B.H., Croom H., Martin A., McIntosh C., McMillan O.W., Palumbi S. The Simple Fools Guide To PCR 1989, University Of Hawaii, Honolulu, 45 pp.
33. Kier P.M. Tertiary echinoids from the Caloosahatchee and Tamiami formations of Florida: Smithsonian Miscellaneous. Collections 1963, 145:1-63.
34. Klein, J.T., 1734. Naturalis dispositio echinodermatum. Accessit lucubratiuncula de aculeis echinorum marinorum, cum spicilegio de belemnitis. 1-78. Gedani, Schreiber.
35. Knowlton N., Weigt L.A. New dates and new rates for divergence across the Isthmus of Panama. Proceedings of the Royal Society Biological Sciences 1998, 265:2257-2263.
36. Krantz D.E. A chronology of Pliocene sea-level fluctuations, US Atlantic Coastal Plain. Quaternary Science Reviews 1991, 10:163-174.
37. Landry C., Geyer L.B., Arakaki Y., Uehara T., Palumbi S.R. Recent speciation in the Indo-West Pacific: rapid evolution of gamete recognition and sperm morphology in cryptic species of sea urchin. Proceedings of the Royal Society Biological Sciences 2003, 270:1839-1847.
38. Leske, N.G., 1778. Iacobi Theodori Klein natvralis dispositio echinodermatvm. Accesservnt lvcvbrativncvla de acvleis echinorvm marinorvm et spicilegivm de belemnitis. 278 pp. Lipsiae, Gleditsch.
39. Lessios H.A. Echinoids of the Pacific waters of Panama: Status of knowledge and new records. Revista de Biologia Tropical 2005, 53:147-170.
40. Lessios H.A. The Great American Schism: divergence of marine organisms after the rise of the Central American Isthmus. Annual Reviews of Ecology Evolution and Systematics 2008, 39:63-91.
41. Lessios H.A., Kessing B.D., Robertson D.R., Paulay G. Phylogeography of the pantropical sea urchin Eucidaris in relation to land barriers and ocean currents. Evolution 1999, 53:806-817.
42. Lessios H.A., Kessing B.D., Pearse J.S. Population structure and speciation in tropical seas: global phylogeography of the sea urchin Diadema. Evolution 2001, 555:955-975.
43. Lessios H.A., Kane J., Robertson D.R. Phylogeography of the pantropical sea urchin Tripneustes: contrasting patterns of population structure between oceans. Evolution 2003, 57:2026-2036.
44. Lessios H.A., Lockhart S., Collin R., et al. Phylogeography and bindin evolution in Arbacia, a sea urchin genus with an unusual distribution. Molecular Ecology 2012, 21:130-144.
45. Littlewood D.T.J., Smith A.B. A combined morphological and molecular phylogeny for sea urchins (Echinoidea: Echinodermata). Philosophical Transactions of the Royal Society of London 1995, 347B:213-234.
46. Lyons W.G. Post-Miocene species of Latirus Monfort, 1810 (Mollusca: Faciolariidae) of southern Florida, with a review of the regional marine biostratigraphy. Bulletin of the Florida Museum of Natural History 1991, 35:131-208.
47. Maddison, D.R., Maddison, W.P., 2005. MacClade 4: Analysis of Phylogeny and Character Evolution. Version 4.08a. http://macclade.org.
48. Marko P.B. Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the Isthmus of Panama. Molecular Biology and Evolution 2002, 19:2005-2021.
49. Mayr E. Geographic speciation in tropical echinoids. Evolution 1954, 8:1-18.
50. McCartney M.A., Keller G., Lessios H.A. Dispersal barriers in tropical oceans and speciation of Atlantic and eastern Pacific Echinometra sea urchins. Molecular Ecology 2000, 9:1391-1400.
51. Michelin, H., 1858. Revue des especes du genre Mellita. Revue et Magasin de Zoologie Pure et Appliquée 1858, p. 2. PI. VIII, I.
52. Montes C., Cardona A., MacFadden R., Moron S.E., Silva C.A., Restrepo-Moreno S., Ramirez D.A., Wilson J., Farris D., Bayona G.A., Jaramillo C., Valencia V., Flores J.A. Evidence for middle Eocene and younger emergence in Central Panama: implications for Isthmus closure. Geological Society of America Bulletin 2012, 120:780-799.
53. Mooi R., Martínez S., Parma S.G. Phylogenetic systematics of Tertiary monophorasterid sand dollars (Clypeasteroida: Echinoidea) from South America. Journal of Paleontology 2000, 74:263-281.
54. Mooi R., Peterson D. A new species of Leodia (Clypeasteroida: Echinoidea) from the Neogene of Venezuela and its importance in the phylogeny of mellitid sand dollars. Journal of Paleontology 2000, 74:1083-1092.
55. Mortensen, T., 1948. A Monograph of the Echinoidea. IV, 2. Clypeasteroida. Clypeasteridæ, Arachnoidæ, Fibulariidæ, Laganidæ and Scutellidæ. CA Reitzel; Copenhagen. 471 pp.
56. O'Dea A., Jackson J.B.C., Fortunato H., Smith J.T., D'Croz L., Johnson K.G., Todd J.A. Environmental change preceded Caribbean extinction by 2 million years. Proceeding of the National Academy of Science of the United States of America 2007, 104:5501-5506.
57. Palumbi S.R., Lessios H.A. Evolutionary animation: How do molecular phylogenies compare to Mayr's reconstruction of speciation patterns in the sea?. Proceedings of the National Academy of Sciences of the United States of America 2005, 102(Suppl. 1):6566-6572.
58. Petuch E.J. Geographical heterochrony: contemporaneous coexistence of Neogene and Recent molluscan faunas in the Americas. Palaeogeography, Palaeoclimatology Palaeoecology 1982, 37:277-312.
59. Petuch E.J. Cenozoic Seas: the View From North America 2004, CRC Press, Boca Raton, Fl, 308 pp.
60. Rambaut, A., Drummond, A.J., 2007. Tracer v1.4. http://beast.bio.ed.ac.uk/Tracer.
61. Ravenel E. Description of two new Scutella from South Carolina. Proceedings of the Academy of Natural Sciences of Philadelphia 1841, 1:81-82.
62. Ronquist F., Huelsenbeck J.P. MrBayes version 3.0: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
63. Smith J.T., Jackson J.B.C. Ecology of extreme faunal turnover of tropical American scallops. Paleobiology 2009, 35:77-93.
64. Swofford, D.L., 2002.PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
65. Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 1993, 10:512-526.
66. Tavare S. Some probabilistic and statistical problems in the analysis of DNA sequences. Lectures on Mathematics in the Life Sciences (American Mathematical Society) 1986, 17:57-86.
67. Telford M., Mooi R. Resource partitioning by sand dollars in carbonate and siliceous sediments: evidence from podial and particle dimensions. Biological Bulletin 1986, 171:197-207.
68. Vermeij G.J. One-way traffic in the western Atlantic: causes and consequences of Miocene to early Pliocene molluscan invasions in Florida and the Caribbean. Paleobiology 2005, 31:624-642.
69. Ward R.D., Holmes B.H., O'Hara T.D. DNA barcoding discriminates echinoderm species. Molecular Ecology Resources 2008, 8:1202-1211.
70. Webb S.D. Mammalian faunal dynamics of the great American interchange. Paleobiology 1976, 2:220-234.
71. Xia X., Xie Z., Salemi M., Chen L., Wang Y. An index of substitution saturation and its application. Molecular Phylogenetics and Evolution 2003, 26:1-7.
72. Xia X., Lemey P. Assessing substitution saturation with DAMBE. The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny 2009, 615-630. Cambridge University Press. second ed. P. Lemey, M. Salemi, A.M. Vandamme (Eds.).
73. Zigler K.S., Lessios H.A. Speciation on the coasts of the new world: phylogeography and the evolution of bindin in the sea urchin genus Lytechinus. Evolution 2004, 58:1225-1241.
74. Zwickl, D.J., 2006. Genetic Algorithm Approaches for the Phylogenetic Analysis of Large Biological Sequence Datasets Under the Maximum Likelihood Criterion. Ph.D. Dissertation, The University of Texas at Austin.