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Volumn 58, Issue 2, 2013, Pages 468-473

Evaluation of the Roche prototype 454 HIV-1 ultradeep sequencing drug resistance assay in a routine diagnostic laboratory

Author keywords

454; HIV; Resistance; UDS

Indexed keywords

ABACAVIR; DARUNAVIR; EFAVIRENZ; EMTRICITABINE; LAMIVUDINE; LAMIVUDINE PLUS ZIDOVUDINE; LOPINAVIR; RITONAVIR; RNA DIRECTED DNA POLYMERASE INHIBITOR; TENOFOVIR;

EID: 84884530557     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2013.07.009     Document Type: Article
Times cited : (6)

References (26)
  • 1
    • 0037169170 scopus 로고    scopus 로고
    • Clinical utility of HIV-1 genotyping and expert advice: the havana trial
    • Tural C., Ruiz L., Holtzer C., Schapiro J., Viciana P., Gonzalez J., et al. Clinical utility of HIV-1 genotyping and expert advice: the havana trial. AIDS 2002, 16:209-218.
    • (2002) AIDS , vol.16 , pp. 209-218
    • Tural, C.1    Ruiz, L.2    Holtzer, C.3    Schapiro, J.4    Viciana, P.5    Gonzalez, J.6
  • 2
    • 0033606540 scopus 로고    scopus 로고
    • Drug-resistance genotyping in HIV-1 therapy: the VIRADAPT randomized controlled trial
    • Durant J., Clevenbergh P., Halfon P., Delgiudice P., Porsin S., Simonet P., et al. Drug-resistance genotyping in HIV-1 therapy: the VIRADAPT randomized controlled trial. The Lancet 1999, 353:2195-2199.
    • (1999) The Lancet , vol.353 , pp. 2195-2199
    • Durant, J.1    Clevenbergh, P.2    Halfon, P.3    Delgiudice, P.4    Porsin, S.5    Simonet, P.6
  • 3
    • 0033920318 scopus 로고    scopus 로고
    • A randomized study of antiretroviral management based on plasma genotypic antiretroviral resistance testing in patients failing therapy
    • Baxter J.D., Mayers D.L., Wentworth D.N., Neaton J.D., Hoover M.L., Winters M.A., et al. A randomized study of antiretroviral management based on plasma genotypic antiretroviral resistance testing in patients failing therapy. AIDS 2000, 14:F83-F93.
    • (2000) AIDS , vol.14
    • Baxter, J.D.1    Mayers, D.L.2    Wentworth, D.N.3    Neaton, J.D.4    Hoover, M.L.5    Winters, M.A.6
  • 4
    • 83755225761 scopus 로고    scopus 로고
    • British HIV Association guidelines for the routine investigations and monitoring of adult HIV-1 infected individuals 2011
    • Asboe D., Aitken C., Boffito M., Booth C., Cane P., Fakoya A., et al. British HIV Association guidelines for the routine investigations and monitoring of adult HIV-1 infected individuals 2011. HIV Med 2012, 13:1-44.
    • (2012) HIV Med , vol.13 , pp. 1-44
    • Asboe, D.1    Aitken, C.2    Boffito, M.3    Booth, C.4    Cane, P.5    Fakoya, A.6
  • 5
    • 38949104111 scopus 로고    scopus 로고
    • European AIDS Clinical Society (EACS) guidelines for the clinical management and treatment of HIV-infected adults
    • the EACS Executive Committee
    • Clumeck N., Pozniak A., Raffi F., the EACS Executive Committee European AIDS Clinical Society (EACS) guidelines for the clinical management and treatment of HIV-infected adults. HIV Med 2008, 9:65-71.
    • (2008) HIV Med , vol.9 , pp. 65-71
    • Clumeck, N.1    Pozniak, A.2    Raffi, F.3
  • 6
    • 19944428265 scopus 로고    scopus 로고
    • Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotypes analysis
    • Palmer S., Kearney M., Malderelli F., Halvas E.K., Bixby C.J., Bazmi H., et al. Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotypes analysis. J Clin Microbiol 2005, 43:406-413.
    • (2005) J Clin Microbiol , vol.43 , pp. 406-413
    • Palmer, S.1    Kearney, M.2    Malderelli, F.3    Halvas, E.K.4    Bixby, C.J.5    Bazmi, H.6
  • 7
    • 48749086685 scopus 로고    scopus 로고
    • Minority HIV-1 drug resistance mutations are present in antiretroviral treatment naive populations and associated with reduced treatment efficacy
    • Johnson J.A., Li J.F., Wei X., Lipscomb J., Irlbeck D., Craig C., et al. Minority HIV-1 drug resistance mutations are present in antiretroviral treatment naive populations and associated with reduced treatment efficacy. PLoS Med 2008, 5:e158.
    • (2008) PLoS Med , vol.5
    • Johnson, J.A.1    Li, J.F.2    Wei, X.3    Lipscomb, J.4    Irlbeck, D.5    Craig, C.6
  • 8
    • 58749087348 scopus 로고    scopus 로고
    • Minority quasispecies of drug resistant HIV-1 that lead to early therapy failure in treatment-naive and-adherence patients
    • Metzner K.J., Giulieri S.G., Knoepfel S.A., Rauch P., Burgisser P., Yerly S., et al. Minority quasispecies of drug resistant HIV-1 that lead to early therapy failure in treatment-naive and-adherence patients. Clin Infect Dis 2009, 48:239-247.
    • (2009) Clin Infect Dis , vol.48 , pp. 239-247
    • Metzner, K.J.1    Giulieri, S.G.2    Knoepfel, S.A.3    Rauch, P.4    Burgisser, P.5    Yerly, S.6
  • 9
    • 73349116621 scopus 로고    scopus 로고
    • Low-frequency K103N strengthens the impact of transmitted drug resistance on virologic responses to first-line efavirenz or nevirapine-based highly active antiretroviral therapy
    • Geretti A.M., Fox Z.V., Booth C.L., Smith C.J., Phillips A.J., Johnson M., et al. Low-frequency K103N strengthens the impact of transmitted drug resistance on virologic responses to first-line efavirenz or nevirapine-based highly active antiretroviral therapy. J Acquir Immune Defic Syndr 2009, 52:569-573.
    • (2009) J Acquir Immune Defic Syndr , vol.52 , pp. 569-573
    • Geretti, A.M.1    Fox, Z.V.2    Booth, C.L.3    Smith, C.J.4    Phillips, A.J.5    Johnson, M.6
  • 10
    • 79953745195 scopus 로고    scopus 로고
    • Low-frequency HIV-1 drug resistance mutations and risk of NNRTI-based antiretroviral treatment failure: a systematic review and pooled analysis
    • Li J.Z., Paredes R., Ribaudo H.J., Svaroskaia E.S., Metzner K.J., Kozal M.J., et al. Low-frequency HIV-1 drug resistance mutations and risk of NNRTI-based antiretroviral treatment failure: a systematic review and pooled analysis. JAMA 2011, 305:1327-1335.
    • (2011) JAMA , vol.305 , pp. 1327-1335
    • Li, J.Z.1    Paredes, R.2    Ribaudo, H.J.3    Svaroskaia, E.S.4    Metzner, K.J.5    Kozal, M.J.6
  • 11
    • 34547643929 scopus 로고    scopus 로고
    • Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance
    • Wang C., Mitsuya Y., Gharizadeh B., Ronaghi M., Shafer R.W. Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res 2007, 17(8):1195-1201.
    • (2007) Genome Res , vol.17 , Issue.8 , pp. 1195-1201
    • Wang, C.1    Mitsuya, Y.2    Gharizadeh, B.3    Ronaghi, M.4    Shafer, R.W.5
  • 12
  • 13
    • 82255181690 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies to diagnostic virology
    • Barzon L., Lavezzo E., Militello V., Toppo S., Palu G. Applications of next-generation sequencing technologies to diagnostic virology. Int J Mol Sci 2011, 12:7861-7884.
    • (2011) Int J Mol Sci , vol.12 , pp. 7861-7884
    • Barzon, L.1    Lavezzo, E.2    Militello, V.3    Toppo, S.4    Palu, G.5
  • 14
    • 84875803298 scopus 로고    scopus 로고
    • Comparative evaluation of the Artus HIV-1 QS-RGQ assay and the Abbott RealTime HIV-1 assay for the quantification of HIV-1 RNA in plasma
    • Garcia-Diaz A., Labbett W., Clewley G.S., Guerrero-Ramos, Geretti A.M. Comparative evaluation of the Artus HIV-1 QS-RGQ assay and the Abbott RealTime HIV-1 assay for the quantification of HIV-1 RNA in plasma. J Clin Virol 2013, 57(1):66-69.
    • (2013) J Clin Virol , vol.57 , Issue.1 , pp. 66-69
    • Garcia-Diaz, A.1    Labbett, W.2    Clewley, G.S.3    Guerrero-Ramos4    Geretti, A.M.5
  • 16
    • 84874069503 scopus 로고    scopus 로고
    • Evaluation of a benchtop HIV ultradeep pyrosequencing drug resistance assay in the clinical laboratory
    • Boaz A., Girshengorn S., Matus N., Hadass T., Achsanov S., Zeldis I., et al. Evaluation of a benchtop HIV ultradeep pyrosequencing drug resistance assay in the clinical laboratory. J Clin Microbiol 2013, 51(3):880-886.
    • (2013) J Clin Microbiol , vol.51 , Issue.3 , pp. 880-886
    • Boaz, A.1    Girshengorn, S.2    Matus, N.3    Hadass, T.4    Achsanov, S.5    Zeldis, I.6
  • 17
    • 80955144081 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 drug resistance testing: evaluation of a new ultra-deep sequencing-based protocol and comparison with TRUGENE HIV-1 Genityping Kit
    • Stelz E., Proll J., Bizon B., Niklas N., Danzer M., Hackl C., et al. Human immunodeficiency virus type 1 drug resistance testing: evaluation of a new ultra-deep sequencing-based protocol and comparison with TRUGENE HIV-1 Genityping Kit. J Virol Methods 2011 Dec, 178:94-97.
    • (2011) J Virol Methods , vol.178 , pp. 94-97
    • Stelz, E.1    Proll, J.2    Bizon, B.3    Niklas, N.4    Danzer, M.5    Hackl, C.6
  • 18
    • 2442670063 scopus 로고    scopus 로고
    • Detection of HIV-1 antiretroviral drug resistance from patients with persistently low but detectable viremia
    • Mackie E.N., Dustans S., McClure M.J., Weber J.N., Clartre J.R. Detection of HIV-1 antiretroviral drug resistance from patients with persistently low but detectable viremia. J Virol Methods 2004, 119:73-81.
    • (2004) J Virol Methods , vol.119 , pp. 73-81
    • Mackie, E.N.1    Dustans, S.2    McClure, M.J.3    Weber, J.N.4    Clartre, J.R.5
  • 19
    • 77950923702 scopus 로고    scopus 로고
    • Antiretroviral drug resistance in HIV-1infected patients at low-level viremia
    • on behalf of the UK HIV drug resistance database and the UK collaborative HIV cohort study
    • Mackie E.N., Phillips A.N., Kaye S., Booth C., Geretti A.M., on behalf of the UK HIV drug resistance database and the UK collaborative HIV cohort study Antiretroviral drug resistance in HIV-1infected patients at low-level viremia. J Infect Dis 2010, 201:1303-1307.
    • (2010) J Infect Dis , vol.201 , pp. 1303-1307
    • Mackie, E.N.1    Phillips, A.N.2    Kaye, S.3    Booth, C.4    Geretti, A.M.5
  • 21
    • 77956204474 scopus 로고    scopus 로고
    • Nucleic acid template and the risk of a PCR-induced HIV-1 drug resistance mutation
    • doi: 10.1371/journal.pone.0010992
    • Varghese V., Wang E., Babrzadeh F., Bachman M.H., Shahriar R., et al. Nucleic acid template and the risk of a PCR-induced HIV-1 drug resistance mutation. Plos One 2010, 5. doi: 10.1371/journal.pone.0010992.
    • (2010) Plos One , vol.5
    • Varghese, V.1    Wang, E.2    Babrzadeh, F.3    Bachman, M.H.4    Shahriar, R.5
  • 22
    • 79956044149 scopus 로고    scopus 로고
    • Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing
    • Gilles A., Meglecz E., Pech N., Ferreira S., Malausa T., et al. Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing. BMC Genomics 2011, 12:245.
    • (2011) BMC Genomics , vol.12 , pp. 245
    • Gilles, A.1    Meglecz, E.2    Pech, N.3    Ferreira, S.4    Malausa, T.5
  • 23
    • 84875002547 scopus 로고    scopus 로고
    • Analysis of 454 sequencing error rate, error sources, and artefact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA
    • Shao W., Boltz V.F., Spindler J.E., Keraney M.F., Maldarelli F., et al. Analysis of 454 sequencing error rate, error sources, and artefact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA. Retrovirology 2013 Feb 13, 18:10.
    • (2013) Retrovirology , vol.18 , pp. 10
    • Shao, W.1    Boltz, V.F.2    Spindler, J.E.3    Keraney, M.F.4    Maldarelli, F.5
  • 24
    • 61849172898 scopus 로고    scopus 로고
    • Low-abundance drug-resistant viral variants in chronically HIV-infected antiretroviral-naïve patients significantly impact treatment outcomes
    • Simen B.B., Simons J.F., Hullsiek K.H., Novak R.M., Macarthur R.D., et al. Low-abundance drug-resistant viral variants in chronically HIV-infected antiretroviral-naïve patients significantly impact treatment outcomes. J Infect Dis 2009 Mar 1, 199(5):693-701.
    • (2009) J Infect Dis , vol.199 , Issue.5 , pp. 693-701
    • Simen, B.B.1    Simons, J.F.2    Hullsiek, K.H.3    Novak, R.M.4    Macarthur, R.D.5
  • 25
    • 84884530848 scopus 로고    scopus 로고
    • Preexisting minority drug-resistant HIV-1 variants, adherence and risk of antiretroviral treatment-naive patients significantly impact treatment outcomes
    • Paredes R., Lalama C.M., Ribaudo H.J., Schackman B.R., Shikuma C., Giguel F., et al. Preexisting minority drug-resistant HIV-1 variants, adherence and risk of antiretroviral treatment-naive patients significantly impact treatment outcomes. J Infect Dis 2010, 50:566-573.
    • (2010) J Infect Dis , vol.50 , pp. 566-573
    • Paredes, R.1    Lalama, C.M.2    Ribaudo, H.J.3    Schackman, B.R.4    Shikuma, C.5    Giguel, F.6
  • 26
    • 84874253319 scopus 로고    scopus 로고
    • Impact of minorit nonnucleoside reverse transcriptase inhibitor resistance mutations on resistance genotype after virologic failure
    • Li J.Z., Paredes R., Ribaudo H.J., Kozal M.J., Svarovskaia E.S., Johnson J.A., et al. Impact of minorit nonnucleoside reverse transcriptase inhibitor resistance mutations on resistance genotype after virologic failure. J Infect Dis 2013, 207:893-897.
    • (2013) J Infect Dis , vol.207 , pp. 893-897
    • Li, J.Z.1    Paredes, R.2    Ribaudo, H.J.3    Kozal, M.J.4    Svarovskaia, E.S.5    Johnson, J.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.