In silico and experimental methods revealed highly diverse bacteria with quorum sensing and aromatics biodegradation systems - A potential broad application on bioremediation

Bioresource Technology

Volumn 148, Issue , 2013, Pages 311-316

  Huang, Yili ^a   Zeng, Yanhua ^a   Yu, Zhiliang ^b   Zhang, Jing ^a   Feng, Hao ^a   Lin, Xiuchun ^c  

^a ZHEJIANG UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY OF TECHNOLOGY   (China)

^c PUTIAN UNIVERSITY   (China)

Author keywords

Acyl homoserine lactone; Aromatic compounds; Biodegradation; In silico; Quorum sensing

Indexed keywords

AROMATIC COMPOUNDS; AROMATIZATION; BACTERIA; BIOREMEDIATION; BIOTECHNOLOGY; ESTERS; GAS CHROMATOGRAPHY; GENES; MICROBIOLOGY;

ACYL HOMOSERINE LACTONES; BIO-DEGRADATION SYSTEM; BIOREMEDIATION TECHNOLOGIES; BROAD APPLICATION; EXPERIMENTAL METHODS; HORIZONTAL TRANSFER; IN-SILICO; QUORUM-SENSING;

BIODEGRADATION;

N ACYLHOMOSERINE LACTONE; PHENANTHRENE;

AROMATIC HYDROCARBON; BACTERIUM; BIODEGRADATION; BIOREMEDIATION; DATABASE; ENZYME ACTIVITY; EXPERIMENTAL STUDY; GAS CHROMATOGRAPHY; GENOME; MOLECULAR ANALYSIS; PHYLOGENETICS; PYRENE; SPECIES DIVERSITY;

ARTICLE; BACTERIAL GENOME; BACTERIUM CULTURE; BETAPROTEOBACTERIA; BIODEGRADATION; BIOREMEDIATION; BURKHOLDERIACEAE; CHROMATOGRAPHY; COMPUTER MODEL; GAMMAPROTEOBACTERIA; HORIZONTAL GENE TRANSFER; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PSEUDOMONADACEAE; QUORUM SENSING; REGULATORY MECHANISM; RHIZOBIACEAE; RHIZOBIALES; RHODOBACTERACEAE; SPHINGOMONADACEAE; SPHINGOMONADALES; THIN LAYER CHROMATOGRAPHY;

RHIZOBIALES; SPHINGOMONADALES;

ACYL HOMOSERINE LACTONE; AROMATIC COMPOUNDS; BIODEGRADATION; IN SILICO; QUORUM SENSING;

4-BUTYROLACTONE; BACTERIA; BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; BIODIVERSITY; CHROMATOGRAPHY, THIN LAYER; COMPUTER SIMULATION; GENES, BACTERIAL; HYDROCARBONS, AROMATIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYCYCLIC HYDROCARBONS, AROMATIC; QUORUM SENSING; REFERENCE STANDARDS; RNA, RIBOSOMAL, 16S;

EID: 84884388012     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2013.08.155     Document Type: Article

References (24)

1. Basta T., Keck A., Klein J., Stolz A. Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains. J. Bacteriol. 2004, 186:3862-3872.
2. Case R.J., Labbate M., Kjelleberg S. AHL-driven quorum-sensing circuits: their frequency and function among the Proteobacteria. ISME J. 2008, 2:345-349.
3. Cataldi T.R.I., Bianco G., Frommberger M., Schmitt-Kopplin P. Direct analysis of selected N-acyl-l-homoserine lactones by gas chromatography/mass spectrometry. Rapid. Commun. Mass Spectrom. 2004, 18:1341-1344.
4. DeBruyn J.M., Mead T.J., Sayler G.S. Horizontal transfer of PAH catabolism genes in Mycobacterium: evidence from comparative genomics and isolated Pyrene-degrading bacteria. Environ. Sci. Technol. 2012, 46:99-106.
5. Fuqua C., Winans S.C., Greenberg E.P. Census and consensus in bacterial ecosystems: the LuxR-LuxI family of quorum-sensing transcriptional regulators. Annu. Rev. Microbiol. 1996, 50:727-751.
6. Gan H.M., Buckley L., Szegedi E., Hudson A.O., Savka M.A. Identification of an rsh gene from a Novosphingobium sp. necessary for quorum-sensing signal accumulation. J. Bacteriol. 2009, 191:2551-2560.
7. Haritash A.K., Kaushik C.P. Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review. J. Hazard. Mater. 2009, 169:1-15.
8. Hilyard E.J., Jones-Meehan J.M., Spargo B.J., Hill R.T. Enrichment, isolation, and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth River sediments. Appl. Environ. Microbiol. 2008, 74:1176-1182.
9. Huang Y.L., Ki J.S., Case R.J., Qian P.Y. Diversity and acyl-homoserine lactone production among subtidal biofilm-forming bacteria. Aquat. Microbiol. Ecol. 2008, 52:185-193.
10. Huang Y.L., Zhang J., Yu Z.L., Zeng Y.H., Chen Y.Q. Isolation and characterization of acyl homoserine lactone-producing bacteria during an urban river biofilm formation. Arch. Microbiol. 2012, 194:1043-1048.
11. Huang Y.L., Zeng Y.H., Yu Z.L., Zhang J. Distribution and diversity of acyl homoserine lactone producing bacteria from four different soils. Curr. Microbiol. 2013, 66:10-15.
12. Huang Y.L., Zhang J., Zhu L.Z. Evaluation of the application potential of bentonites in phenanthrene bioremediation by characterizing the biofilm community. Bioresour. Technol. 2013, 134:17-23.
13. Iwai S., Johnson T.A., Chai B.L., Hashsham S.A., Tiedje J.M. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Appl. Environ. Microbiol. 2011, 77:3551-3557.
14. Juhas M., van der Meer J.R., Gaillard M., Harding R.M., Hood D.W., Crook D.W. Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol. Rev. 2009, 33:376-393.
15. Kiyohara H., Nagao K., Yana K. Rapid screen for bacteria degrading water insoluble, solid hydrocarbons on agar plates. Appl. Environ. Microbiol. 1982, 43:454-457.
16. Ma Y.F., Wang L., Shao Z.Z. Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer. Environ. Microbiol. 2006, 8:455-465.
17. Peng R.H., Xiong A.S., Xue Y., Fu X.Y., Gao F., Zhao W., Tian Y.S., Yao Q.H. Microbial biodegradation of polyaromatic hydrocarbons. FEMS Microbiol. Rev. 2008, 32:927-955.
18. Samanta S.K., Singh O.V., Jain R.K. Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation. Trends Biotechnol. 2002, 20:243-248.
19. Shrout J.D., Nerenberg R. Monitoring bacterial twitter: does quorum sensing determine the behavior of water and wastewater treatment biofilms?. Environ. Sci. Technol. 2012, 46:1995-2005.
20. Stolz A. Molecular characteristics of xenobiotic-degrading sphingomonads. Appl. Microbiol. Biotechnol. 2009, 81:793-811.
21. Waters C.M., Bassler B.L. Quorum sensing: cell-to-cell communication in bacteria. in annual review of cell and developmental biology. Annu. Rev.: Palo Alto 2005, 21:319-346.
22. Whitehead N.A., Barnard A.M.L., Slater H., Simpson N.J.L., Salmond G.P.C. Quorum-sensing in gram-negative bacteria. FEMS Microbiol. Rev. 2001, 25:365-404.
23. Yeon K.M., Cheong W.S., Oh H.S., Lee W.N., Hwang B.K., Lee C.H., Beyenal H., Lewandowski Z. Quorum sensing: a new biofouling control paradigm in a membrane bioreactor for advanced wastewater treatment. Environ. Sci. Technol. 2009, 43:380-385.
24. Yong Y.C., Zhong J.J. Regulation of aromatics biodegradation by rhl quorum sensing system through induction of catechol meta-cleavage pathway. Bioresour. Technol. 2013, 136:761-765.