-
1
-
-
33745256005
-
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
-
Anisimova, M., and Gascuel, O. (2006). Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst. Biol. 55, 539-552.
-
(2006)
Syst. Biol.
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
2
-
-
80052014395
-
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
-
Anisimova, M., Gil, M., Dufayard, J.-F. C. D., and Gascue, O. (2011). Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes. Syst. Biol. 60, 685-699.
-
(2011)
Syst. Biol.
, vol.60
, pp. 685-699
-
-
Anisimova, M.1
Gil, M.2
Dufayard, J.-F.C.D.3
Gascue, O.4
-
3
-
-
34047264809
-
Life in acid: pH homeostasis in acidophiles
-
Baker-Austin, C., and Dopson, M. (2007). Life in acid: pH homeostasis in acidophiles. Trends Microbiol. 15, 165-171.
-
(2007)
Trends Microbiol.
, vol.15
, pp. 165-171
-
-
Baker-Austin, C.1
Dopson, M.2
-
4
-
-
33644821142
-
Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru
-
Biddle, J. F., Lipp, J. S., Lever, M. A., Lloyd, K. G., Sørensen, K. B., Anderson, R., et al. (2006). Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proc. Natl. Acad. Sci. U.S.A. 103, 3846-3851.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 3846-3851
-
-
Biddle, J.F.1
Lipp, J.S.2
Lever, M.A.3
Lloyd, K.G.4
Sørensen, K.B.5
Anderson, R.6
-
5
-
-
34447117719
-
Mineralogy influences structure and diversity of bacterial communities associated with geological substrata in a pristine aquifer
-
Boyd, E. S., Cummings, D. E., and Geesey, G. G. (2007a). Mineralogy influences structure and diversity of bacterial communities associated with geological substrata in a pristine aquifer. Microb. Ecol. 54, 170-182.
-
(2007)
Microb. Ecol.
, vol.54
, pp. 170-182
-
-
Boyd, E.S.1
Cummings, D.E.2
Geesey, G.G.3
-
6
-
-
35448932094
-
Isolation, characterization, and ecology of sulfur-respiring crenarchaea inhabiting acid-sulfate-chloride-containing geothermal springs in Yellowstone National Park
-
Boyd, E. S., Jackson, R. A., Encarnacion, G., Zahn, J. A., Beard, T., Leavitt, W. D., et al. (2007b). Isolation, characterization, and ecology of sulfur-respiring crenarchaea inhabiting acid-sulfate-chloride-containing geothermal springs in Yellowstone National Park. Appl. Environ. Microbiol. 73, 6669-6677.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6669-6677
-
-
Boyd, E.S.1
Jackson, R.A.2
Encarnacion, G.3
Zahn, J.A.4
Beard, T.5
Leavitt, W.D.6
-
7
-
-
78649448514
-
[FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism
-
Boyd, E. S., Hamilton, T. L., Spear, J. R., Lavin, M., and Peters, J. W. (2010). [FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism. ISME J. 4, 1485-1495.
-
(2010)
ISME J.
, vol.4
, pp. 1485-1495
-
-
Boyd, E.S.1
Hamilton, T.L.2
Spear, J.R.3
Lavin, M.4
Peters, J.W.5
-
8
-
-
79961093791
-
Diversity, abundance, and potential activity of nitrifying and nitrate-reducing microbial assemblages in a subglacial ecosystem
-
Boyd, E. S., Lange, R. K., Mitchell, A. C., Havig, J. R., Hamilton, T. L., Lafreniere, M. J., et al. (2011a). Diversity, abundance, and potential activity of nitrifying and nitrate-reducing microbial assemblages in a subglacial ecosystem. Appl. Environ. Microbiol. 77, 4778-4787.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 4778-4787
-
-
Boyd, E.S.1
Lange, R.K.2
Mitchell, A.C.3
Havig, J.R.4
Hamilton, T.L.5
Lafreniere, M.J.6
-
9
-
-
78651231125
-
Temperature and pH controls on glycerol dibiphytanyl glycerol tetraether lipid composition in the hyperthermophilic crenarchaeon Acidilobus sulfurireducens
-
Boyd, E. S., Pearson, A., Pi, Y., Li, W.-J., Zhang, Y., He, L., et al. (2011b). Temperature and pH controls on glycerol dibiphytanyl glycerol tetraether lipid composition in the hyperthermophilic crenarchaeon Acidilobus sulfurireducens. Extremophiles 15, 59-65.
-
(2011)
Extremophiles
, vol.15
, pp. 59-65
-
-
Boyd, E.S.1
Pearson, A.2
Pi, Y.3
Li, W.-J.4
Zhang, Y.5
He, L.6
-
10
-
-
0015275944
-
Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature
-
Brock, T., Brock, K., Belly, R., and Weiss, R. (1972). Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch. Mikrobiol. 84, 54-68.
-
(1972)
Arch. Mikrobiol.
, vol.84
, pp. 54-68
-
-
Brock, T.1
Brock, K.2
Belly, R.3
Weiss, R.4
-
12
-
-
67349175709
-
Microbiology and geochemistry of great boiling and mud hot springs in the United States Great Basin
-
Costa, K., Navarro, J., Shock, E., Zhang, C., Soukup, D., and Hedlund, B. (2009). Microbiology and geochemistry of great boiling and mud hot springs in the United States Great Basin. Extremophiles 13, 447-459.
-
(2009)
Extremophiles
, vol.13
, pp. 447-459
-
-
Costa, K.1
Navarro, J.2
Shock, E.3
Zhang, C.4
Soukup, D.5
Hedlund, B.6
-
13
-
-
0036795638
-
Crenarchaeol
-
Damsté, J. S. S., Schouten, S., Hopmans, E. C., Van Duin, A. C. T., and Geenevasen, J. A. J. (2002). Crenarchaeol. J. Lipid Res. 43, 1641-1651.
-
(2002)
J. Lipid Res.
, vol.43
, pp. 1641-1651
-
-
Damsté, J.S.S.1
Schouten, S.2
Hopmans, E.C.3
Van Duin, A.C.T.4
Geenevasen, J.A.J.5
-
14
-
-
0014963118
-
A thermophilic, acidophilic mycoplasma isolated from a coal refuse pile
-
Darland, G., Brock, T. D., Samsonoff, W., and Conti, S. F. (1970). A thermophilic, acidophilic mycoplasma isolated from a coal refuse pile. Science 70, 1416-1418.
-
(1970)
Science
, vol.70
, pp. 1416-1418
-
-
Darland, G.1
Brock, T.D.2
Samsonoff, W.3
Conti, S.F.4
-
15
-
-
84864453108
-
jModelTest 2: more models, new heuristics and parallel computing
-
Darriba, D., Taboada, G. L., Doallo, R., and Posada, D. (2012). jModelTest 2: more models, new heuristics and parallel computing. Nat. Methods 9, 772.
-
(2012)
Nat. Methods
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
16
-
-
38549131184
-
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol
-
de la Torre, J. R., Walker, C. B., Ingalls, A. E., Könneke, M., and Stahl, D. A. (2008). Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ. Microbiol. 10, 810-818.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 810-818
-
-
de la Torre, J.R.1
Walker, C.B.2
Ingalls, A.E.3
Könneke, M.4
Stahl, D.A.5
-
17
-
-
0001321655
-
Effects of temperature on the lipid composition of Caldariella acidophila
-
De Rosa, M., Esposito, E., Gambacorta, A., Nicolaus, B., and Bu'lock, J. D. (1980). Effects of temperature on the lipid composition of Caldariella acidophila. Phytochemistry 19, 827-831.
-
(1980)
Phytochemistry
, vol.19
, pp. 827-831
-
-
De Rosa, M.1
Esposito, E.2
Gambacorta, A.3
Nicolaus, B.4
Bu'lock, J.D.5
-
18
-
-
0024259139
-
The lipids of archaebacteria
-
De Rosa, M., and Gambacorta, A. (1988). The lipids of archaebacteria. Prog. Lipid Res. 27, 153-175.
-
(1988)
Prog. Lipid Res.
, vol.27
, pp. 153-175
-
-
De Rosa, M.1
Gambacorta, A.2
-
19
-
-
0022578265
-
Structure, biosynthesis, and physicochemical properties of archaebacterial lipids
-
De Rosa, M., Gambacorta, A., and Gliozzi, A. (1986). Structure, biosynthesis, and physicochemical properties of archaebacterial lipids. Microbiol. Rev. 50, 70-80.
-
(1986)
Microbiol. Rev.
, vol.50
, pp. 70-80
-
-
De Rosa, M.1
Gambacorta, A.2
Gliozzi, A.3
-
20
-
-
78650956795
-
Measuring nitrification, denitrification, and related biomarkers in continental geothermal ecosystems
-
Dodsworth, J. A., Hungate, B. A., De La Torre, J., Jiang, H., and Hedlund, B. P. (2011). Measuring nitrification, denitrification, and related biomarkers in continental geothermal ecosystems. Meth. Enzymol. 486, 171-203.
-
(2011)
Meth. Enzymol.
, vol.486
, pp. 171-203
-
-
Dodsworth, J.A.1
Hungate, B.A.2
De La Torre, J.3
Jiang, H.4
Hedlund, B.P.5
-
21
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
doi:10.1093/bioinformatics/btr381
-
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., and Knight, R. (2011). UCHIME improves sensitivity and speed of chimera detection. Bioinformatics doi:10.1093/bioinformatics/btr381
-
(2011)
Bioinformatics
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
22
-
-
0028141820
-
Stability and proton-permeability of liposomes composed of archaeal tetraether lipids
-
Elferink, M. G. L., De Wit, J. G., Driessen, A. J. M., and Konings, W. N. (1994). Stability and proton-permeability of liposomes composed of archaeal tetraether lipids. Biochim. Biophys. Acta 1193, 247-254.
-
(1994)
Biochim. Biophys. Acta
, vol.1193
, pp. 247-254
-
-
Elferink, M.G.L.1
De Wit, J.G.2
Driessen, A.J.M.3
Konings, W.N.4
-
23
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis, C. A., Roberts, K. J., Beman, J. M., Santoro, A. E., and Oakley, B. B. (2005). Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. U.S.A. 102, 14683-14688.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
24
-
-
0343280008
-
Molecular modeling of archaebacterial bipolar tetraether lipid membranes
-
Gabriel, J. L., and Chong, P. L. G. (2000). Molecular modeling of archaebacterial bipolar tetraether lipid membranes. Chem. Phys. Lipids 105, 193-200.
-
(2000)
Chem. Phys. Lipids
, vol.105
, pp. 193-200
-
-
Gabriel, J.L.1
Chong, P.L.G.2
-
25
-
-
0000869403
-
Effect of isoprenoid cyclization on the transition temperature of lipids in thermophilic archaebacteria
-
Gliozzi, A., Paoli, G., De Rosa, M., and Gambacorta, A. (1983). Effect of isoprenoid cyclization on the transition temperature of lipids in thermophilic archaebacteria. Biochim. Biophys. Acta 735, 234-242.
-
(1983)
Biochim. Biophys. Acta
, vol.735
, pp. 234-242
-
-
Gliozzi, A.1
Paoli, G.2
De Rosa, M.3
Gambacorta, A.4
-
26
-
-
37649025929
-
The ecodist package for dissimilarity-based analysis of ecological data
-
Goslee, S. C., and Urban, D. L. (2007). The ecodist package for dissimilarity-based analysis of ecological data. J. Stat. Softw. 22, 1-19.
-
(2007)
J. Stat. Softw.
, vol.22
, pp. 1-19
-
-
Goslee, S.C.1
Urban, D.L.2
-
27
-
-
79957518365
-
Environmental constraints underpin the distribution and phylogenetic diversity of nifH in the Yellowstone geothermal complex
-
Hamilton, T. L., Boyd, E. S., and Peters, J. W. (2011). Environmental constraints underpin the distribution and phylogenetic diversity of nifH in the Yellowstone geothermal complex. Microb. Ecol. 61, 860-870.
-
(2011)
Microb. Ecol.
, vol.61
, pp. 860-870
-
-
Hamilton, T.L.1
Boyd, E.S.2
Peters, J.W.3
-
28
-
-
84860281795
-
Distribution of glycerol dialkyl glycerol tetraethers in Tibetan hot springs
-
He, L., Zhang, C. L., Dong, H., Fang, B., and Wang, G. (2012). Distribution of glycerol dialkyl glycerol tetraethers in Tibetan hot springs. Geosci. Front. 3, 289-300.
-
(2012)
Geosci. Front.
, vol.3
, pp. 289-300
-
-
He, L.1
Zhang, C.L.2
Dong, H.3
Fang, B.4
Wang, G.5
-
29
-
-
37749049449
-
An energy balance concept for habitability
-
Hoehler, T. M. (2007). An energy balance concept for habitability. Astrobiology 6, 824-838.
-
(2007)
Astrobiology
, vol.6
, pp. 824-838
-
-
Hoehler, T.M.1
-
30
-
-
77955791211
-
Comparison of extraction methods for quantitative analysis of core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in environmental samples
-
Huguet, C., Martens-Habbena, W., Urakawa, H., Stahl, D. A., and Ingalls, A. E. (2006). Comparison of extraction methods for quantitative analysis of core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in environmental samples. Limnol. Oceangr. Methods 8, 127-145.
-
(2006)
Limnol. Oceangr. Methods
, vol.8
, pp. 127-145
-
-
Huguet, C.1
Martens-Habbena, W.2
Urakawa, H.3
Stahl, D.A.4
Ingalls, A.E.5
-
31
-
-
33644822529
-
On the energetics of chemolithotrophy in nonequilibrium systems: case studies of geothermal springs in Yellowstone National Park
-
Inskeep, W. P., Ackerman, G. G., Taylor, W. P., Kozubal, M., Korf, S., and Macur, R. E. (2005). On the energetics of chemolithotrophy in nonequilibrium systems: case studies of geothermal springs in Yellowstone National Park. Geobiology 3, 297-317.
-
(2005)
Geobiology
, vol.3
, pp. 297-317
-
-
Inskeep, W.P.1
Ackerman, G.G.2
Taylor, W.P.3
Kozubal, M.4
Korf, S.5
Macur, R.E.6
-
32
-
-
78149423315
-
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function
-
doi:10.1371/journal.pone.0009773
-
Inskeep, W. P., Rusch, D. B., Jay, Z., Herrgard, M. J., Kozubal, M. A., Richardson, T. H., et al. (2010). Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function. PLoS ONE 5:e9773. doi:10.1371/journal.pone.0009773
-
(2010)
PLoS ONE
, vol.5
-
-
Inskeep, W.P.1
Rusch, D.B.2
Jay, Z.3
Herrgard, M.J.4
Kozubal, M.A.5
Richardson, T.H.6
-
33
-
-
0036022418
-
Vulcanisaeta distributa gen. nov., sp. nov., and Vulcanisaeta souniana sp. nov., novel hyperthermophilic, rod-shaped crenarchaeotes isolated from hot springs in Japan.
-
Itoh, T., Suzuki, K.-I., and Nakase, T. (2002). Vulcanisaeta distributa gen. nov., sp. nov., and Vulcanisaeta souniana sp. nov., novel hyperthermophilic, rod-shaped crenarchaeotes isolated from hot springs in Japan. Int. J. Syst. Evol. Microbiol. 52, 1097-1104.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1097-1104
-
-
Itoh, T.1
Suzuki, K.-I.2
Nakase, T.3
-
34
-
-
1242296549
-
Model selection in ecology and evolution
-
Johnson, J. B., and Omland, K. S. (2004). Model selection in ecology and evolution. Trends Ecol. Evol. 19, 101-108.
-
(2004)
Trends Ecol. Evol.
, vol.19
, pp. 101-108
-
-
Johnson, J.B.1
Omland, K.S.2
-
35
-
-
67649659941
-
Toward a general theory of adaptive radiation: insights from microbial experimental evolution
-
Kassen, R. (2009). Toward a general theory of adaptive radiation: insights from microbial experimental evolution. Ann. N. Y. Acad. Sci. 168, 3-22.
-
(2009)
Ann. N. Y. Acad. Sci.
, vol.168
, pp. 3-22
-
-
Kassen, R.1
-
36
-
-
0032488652
-
Low permeability of liposomal membranes composed of bipolar tetraether lipids from thermoacidophilic archaebacterium Sulfolobus acidocaldarius
-
Komatsu, H., and Chong, P. L.-G. (1998). Low permeability of liposomal membranes composed of bipolar tetraether lipids from thermoacidophilic archaebacterium Sulfolobus acidocaldarius. Biochemistry 37, 107-115.
-
(1998)
Biochemistry
, vol.37
, pp. 107-115
-
-
Komatsu, H.1
Chong, P.L.-G.2
-
37
-
-
39649108861
-
Isolation and distribution of a novel iron-oxidizing crenarchaeon from acidic geothermal springs in Yellowstone National Park
-
Kozubal, M., Macur, R. E., Korf, S., Taylor, W. P., Ackerman, G. G., Nagy, A., et al. (2008). Isolation and distribution of a novel iron-oxidizing crenarchaeon from acidic geothermal springs in Yellowstone National Park. Appl. Environ. Microbiol. 74, 942-949.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 942-949
-
-
Kozubal, M.1
Macur, R.E.2
Korf, S.3
Taylor, W.P.4
Ackerman, G.G.5
Nagy, A.6
-
38
-
-
77952063432
-
Adaptive radiation, ecological opportunity, and evolutionary determinism
-
Losos, J. B. (2010). Adaptive radiation, ecological opportunity, and evolutionary determinism. Am. Nat. 175, 623-639.
-
(2010)
Am. Nat.
, vol.175
, pp. 623-639
-
-
Losos, J.B.1
-
39
-
-
8744242152
-
Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid
-
Macalady, J. L., Vestling, M. M., Baumler, D., Boekelheide, N., Kasper, C. W., and Banfield, J. F. (2004). Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid. Extremophiles 8, 411-419.
-
(2004)
Extremophiles
, vol.8
, pp. 411-419
-
-
Macalady, J.L.1
Vestling, M.M.2
Baumler, D.3
Boekelheide, N.4
Kasper, C.W.5
Banfield, J.F.6
-
40
-
-
84870900427
-
Microbial community structure and sulfur biogeochemistry in mildly-acidic sulfidic geothermal springs in Yellowstone National Park
-
Macur, R. E., Jay, Z. J., Taylor, W. P., Kozubal, M. A., Kocar, B. D., and Inskeep, W. P. (2013). Microbial community structure and sulfur biogeochemistry in mildly-acidic sulfidic geothermal springs in Yellowstone National Park. Geobiology 11, 86-99.
-
(2013)
Geobiology
, vol.11
, pp. 86-99
-
-
Macur, R.E.1
Jay, Z.J.2
Taylor, W.P.3
Kozubal, M.A.4
Kocar, B.D.5
Inskeep, W.P.6
-
41
-
-
0035920239
-
Molecular mechanisms of water and solute transport across archaebacterial lipid membranes
-
Mathai, J. C., Sprott, G. D., and Zeidel, M. L. (2001). Molecular mechanisms of water and solute transport across archaebacterial lipid membranes. J. Biol. Chem. 276, 27266-27271.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 27266-27271
-
-
Mathai, J.C.1
Sprott, G.D.2
Zeidel, M.L.3
-
42
-
-
33644829921
-
Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park
-
Meyer-Dombard, D. R., Shock, E. L., and Amend, J. P. (2005). Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park. Geobiology 3, 211-227.
-
(2005)
Geobiology
, vol.3
, pp. 211-227
-
-
Meyer-Dombard, D.R.1
Shock, E.L.2
Amend, J.P.3
-
43
-
-
4644234044
-
Nonmarine crenarchaeol in Nevada hot springs
-
Pearson, A., Huang, Z., Ingalls, A. E., Romanek, C. S., Wiegel, J., Freeman, K. H., et al. (2004). Nonmarine crenarchaeol in Nevada hot springs. Appl. Environ. Microbiol. 70, 5229-5237.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 5229-5237
-
-
Pearson, A.1
Huang, Z.2
Ingalls, A.E.3
Romanek, C.S.4
Wiegel, J.5
Freeman, K.H.6
-
44
-
-
44949100503
-
Factors controlling the distribution of archaeal tetraethers in terrestrial hot springs
-
Pearson, A., Pi, Y., Zhao, W., Li, W., Li, Y., Inskeep, W., et al. (2008). Factors controlling the distribution of archaeal tetraethers in terrestrial hot springs. Appl. Environ. Microbiol. 74, 3523-3532.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 3523-3532
-
-
Pearson, A.1
Pi, Y.2
Zhao, W.3
Li, W.4
Li, Y.5
Inskeep, W.6
-
45
-
-
67649624726
-
In situ production of crenarchaeol in two California hot springs
-
Pitcher, P., Schouten, S., and Sinninghe Damsté, J. S. (2009). In situ production of crenarchaeol in two California hot springs. Appl. Environ. Microbiol. 75, 4443-4451.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 4443-4451
-
-
Pitcher, P.1
Schouten, S.2
Sinninghe Damsté, J.S.3
-
46
-
-
3242738486
-
Crenarchaeotal lipids in lake sediments: a new paleotemperature proxy for continental paleoclimate reconstruction?
-
Powers, L. A., Werne, J. P., Johnson, T. C., Hopmans, E. C., and Sinninghe Damsté, J. S. (2004). Crenarchaeotal lipids in lake sediments: a new paleotemperature proxy for continental paleoclimate reconstruction?. Geology 32, 613-616.
-
(2004)
Geology
, vol.32
, pp. 613-616
-
-
Powers, L.A.1
Werne, J.P.2
Johnson, T.C.3
Hopmans, E.C.4
Sinninghe Damsté, J.S.5
-
47
-
-
42149138713
-
Nitrification in terrestrial hot springs of Iceland and Kamchatka
-
Reigstad, L. J., Richter, A., Daims, H., Urich, T., Schwark, L., and Schleper, C. (2008). Nitrification in terrestrial hot springs of Iceland and Kamchatka. FEMS Microbol. Ecol. 64, 167-174.
-
(2008)
FEMS Microbol. Ecol.
, vol.64
, pp. 167-174
-
-
Reigstad, L.J.1
Richter, A.2
Daims, H.3
Urich, T.4
Schwark, L.5
Schleper, C.6
-
48
-
-
66649087973
-
Biogeography of the Sulfolobus islandicus pan-genome
-
Reno, M. L., Held, N. L., Fields, C. J., Burke, P. V., and Whitaker, R. J. (2009). Biogeography of the Sulfolobus islandicus pan-genome. Proc. Natl. Acad. Sci. U.S.A. 106, 8605-8610.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 8605-8610
-
-
Reno, M.L.1
Held, N.L.2
Fields, C.J.3
Burke, P.V.4
Whitaker, R.J.5
-
49
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., et al. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
50
-
-
0037202665
-
Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures? Earth Planet
-
Schouten, S., Hopmans, E. C., Forster, A., Van Breugal, Y., Kuypers, M. M. M., and Sinninghe Damsté, J. S. (2002). Distributional variations in marine crenarchaeotal membrane lipids: a new tool for reconstructing ancient sea water temperatures? Earth Planet. Sci. Lett. 204, 265-274.
-
(2002)
Sci. Lett.
, vol.204
, pp. 265-274
-
-
Schouten, S.1
Hopmans, E.C.2
Forster, A.3
Van Breugal, Y.4
Kuypers, M.M.M.5
Sinninghe Damsté, J.S.6
-
51
-
-
0034687586
-
Widespread occurence of structurally diverse tetraether membrane lipids: evidence for the ubiquitous presence of low-temperature relatives of hyperthermophiles
-
Schouten, S., Hopmans, E. C., Pancost, R. D., and Sinninghe Damsté, J. S. (2000). Widespread occurence of structurally diverse tetraether membrane lipids: evidence for the ubiquitous presence of low-temperature relatives of hyperthermophiles. Proc. Natl. Acad. Sci. U.S.A. 97, 14421-14426.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 14421-14426
-
-
Schouten, S.1
Hopmans, E.C.2
Pancost, R.D.3
Sinninghe Damsté, J.S.4
-
52
-
-
35148864420
-
Archaeal and bacterial glycerol dialkyl glycerol tetraether lipids in hot springs of Yellowstone National Park
-
Schouten, S., Van Der Meer, M. T. J., Hopmans, E. C., Rijpstra, W. I. C., Reysenbach, A.-L., Ward, D. M., et al. (2007). Archaeal and bacterial glycerol dialkyl glycerol tetraether lipids in hot springs of Yellowstone National Park. Appl. Environ. Microbiol. 73, 6181-6191.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6181-6191
-
-
Schouten, S.1
Van Der Meer, M.T.J.2
Hopmans, E.C.3
Rijpstra, W.I.C.4
Reysenbach, A.-L.5
Ward, D.M.6
-
53
-
-
0344837843
-
Biogeochemical evidence that thermophilic archaea mediate the anaerobic oxidation of methane
-
Schouten, S., Wakeham, S. G., Hopmans, E. C., and Sinninghe Damsté, J. S. (2003). Biogeochemical evidence that thermophilic archaea mediate the anaerobic oxidation of methane. Appl. Environ. Microbiol. 69, 1680-1686.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1680-1686
-
-
Schouten, S.1
Wakeham, S.G.2
Hopmans, E.C.3
Sinninghe Damsté, J.S.4
-
54
-
-
70349677472
-
Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea
-
Schubotz, F., Wakeham, S. G., Lipp, J. S., Fredricks, H. F., and Hinrichs, K.-U. (2009). Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea. Environ. Microbiol. 11, 2720-2734.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2720-2734
-
-
Schubotz, F.1
Wakeham, S.G.2
Lipp, J.S.3
Fredricks, H.F.4
Hinrichs, K.-U.5
-
55
-
-
77953684302
-
Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA
-
Shock, E. L., Holland, M., Meyer-Dombard, D., Amend, J. P., Osburn, G. R., and Fischer, T. P. (2010). Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA. Geochim. Cosmochim. Acta 74, 4005-4043.
-
(2010)
Geochim. Cosmochim. Acta
, vol.74
, pp. 4005-4043
-
-
Shock, E.L.1
Holland, M.2
Meyer-Dombard, D.3
Amend, J.P.4
Osburn, G.R.5
Fischer, T.P.6
-
56
-
-
0036271744
-
Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian Sea
-
Sinninghe Damsté, J. S., Rijpstra, W. I. C., Hopmans, E. C., Prahl, F. G., Wakeham, S. G., and Schouten, S. (2002). Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian Sea. Appl. Environ. Microbiol. 68, 2997-3002.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2997-3002
-
-
Sinninghe Damsté, J.S.1
Rijpstra, W.I.C.2
Hopmans, E.C.3
Prahl, F.G.4
Wakeham, S.G.5
Schouten, S.6
-
57
-
-
14044264258
-
Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem
-
Spear, J. R., Walker, J. J., Mccollom, T. M., and Pace, N. R. (2005). Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem. Proc. Natl. Acad. Sci. U.S.A. 102, 2555-2560.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 2555-2560
-
-
Spear, J.R.1
Walker, J.J.2
Mccollom, T.M.3
Pace, N.R.4
-
58
-
-
1842533021
-
Intact polar membrane lipids in prokaryotes and sediments deciphered by high-performance liquid chromatography/electrospray ionization multistage mass spectrometry - new biomarkers for biogeochemistry and microbial ecology
-
Sturt, H. F., Summons, R. E., Smith, K., Elvert, M., and Hinrichs, K.-U. (2004). Intact polar membrane lipids in prokaryotes and sediments deciphered by high-performance liquid chromatography/electrospray ionization multistage mass spectrometry - new biomarkers for biogeochemistry and microbial ecology. Rapid Commun. Mass Spectrom. 18, 617-628.
-
(2004)
Rapid Commun. Mass Spectrom.
, vol.18
, pp. 617-628
-
-
Sturt, H.F.1
Summons, R.E.2
Smith, K.3
Elvert, M.4
Hinrichs, K.-U.5
-
60
-
-
0000545467
-
Tetraether bolaform amphiphiles as models of archaebacterial membrane lipids: Raman spectroscopy, 31P NMR, X-ray scattering, and electron microscopy
-
Thompson, D. H., Wong, K. F., Humphry-Baker, R., Wheeler, J. J., Kim, J.-M., and Rannanavare, S. B. (1992). Tetraether bolaform amphiphiles as models of archaebacterial membrane lipids: Raman spectroscopy, 31P NMR, X-ray scattering, and electron microscopy. J. Am. Chem. Soc. 114, 9035-9042.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 9035-9042
-
-
Thompson, D.H.1
Wong, K.F.2
Humphry-Baker, R.3
Wheeler, J.J.4
Kim, J.-M.5
Rannanavare, S.B.6
-
61
-
-
79957684288
-
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
-
Tourna, M., Stieglmeier, M., Spang, A., Könneke, M., Schintlmeister, A., Urich, T., et al. (2011). Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc. Natl. Acad. Sci. U.S.A. 108, 8420-8425.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 8420-8425
-
-
Tourna, M.1
Stieglmeier, M.2
Spang, A.3
Könneke, M.4
Schintlmeister, A.5
Urich, T.6
-
62
-
-
0035110198
-
Variation in molecular species of polar lipids from Thermoplasma acidophilum depends on growth temperature
-
Uda, I., Sugai, A., Itoh, Y. H., and Itoh, T. (2001). Variation in molecular species of polar lipids from Thermoplasma acidophilum depends on growth temperature. Lipids 36, 103-105.
-
(2001)
Lipids
, vol.36
, pp. 103-105
-
-
Uda, I.1
Sugai, A.2
Itoh, Y.H.3
Itoh, T.4
-
63
-
-
33947380915
-
Adaptations to energy stress dictate the ecology and evolution of the Archaea
-
Valentine, D. L. (2007). Adaptations to energy stress dictate the ecology and evolution of the Archaea. Nat. Rev. Microbiol. 5, 316-323.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 316-323
-
-
Valentine, D.L.1
-
64
-
-
0032142866
-
The essence of being extremophilic: the role of the unique archaeal membrane lipids
-
van de Vossenberg, J. L. C. M., Driessen, A. J. M., and Konings, W. N. (1998). The essence of being extremophilic: the role of the unique archaeal membrane lipids. Extremophiles 2, 163-170.
-
(1998)
Extremophiles
, vol.2
, pp. 163-170
-
-
van de Vossenberg, J.L.C.M.1
Driessen, A.J.M.2
Konings, W.N.3
-
65
-
-
80255139949
-
Environmental conditions constrain the distribution and diversity of archaeal merA in Yellowstone National Park, Wyoming, U.S.A.
-
Wang, Y., Boyd, E., Crane, S., Lu-Irving, P., Krabbenhoft, D., King, S., et al. (2011). Environmental conditions constrain the distribution and diversity of archaeal merA in Yellowstone National Park, Wyoming, U.S.A. Microb. Ecol. 62, 739-752.
-
(2011)
Microb. Ecol.
, vol.62
, pp. 739-752
-
-
Wang, Y.1
Boyd, E.2
Crane, S.3
Lu-Irving, P.4
Krabbenhoft, D.5
King, S.6
-
66
-
-
51749095104
-
Phylocom: software for the analysis of phylogenetic community structure and trait evolution
-
Webb, C. O., Ackerly, D. D., and Kembel, S. W. (2008). Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 24, 2098-2100.
-
(2008)
Bioinformatics
, vol.24
, pp. 2098-2100
-
-
Webb, C.O.1
Ackerly, D.D.2
Kembel, S.W.3
-
67
-
-
83155178478
-
Spatial variations in archaeal lipids of surface water and core-top sediments in the South China Sea and their implications for paleoclimate studies
-
Wei, Y., Wang, J., Liu, J., Dong, L., Li, L., Wang, H., et al. (2011). Spatial variations in archaeal lipids of surface water and core-top sediments in the South China Sea and their implications for paleoclimate studies. Appl. Environ. Microbiol. 77, 7479-7489.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 7479-7489
-
-
Wei, Y.1
Wang, J.2
Liu, J.3
Dong, L.4
Li, L.5
Wang, H.6
-
68
-
-
33645384503
-
Determination of the sedimentary microbial biomass by extractable lipid phosphate
-
White, D. C., Davis, W. M., Nickels, J. S., King, J. D., and Bobbie, R. J. (1979). Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 40, 51-62.
-
(1979)
Oecologia
, vol.40
, pp. 51-62
-
-
White, D.C.1
Davis, W.M.2
Nickels, J.S.3
King, J.D.4
Bobbie, R.J.5
-
69
-
-
0027405875
-
Archaebacterial lipids: highly proton-impermeable membranes from 1,2-diphytanyl-sn-glycero-3-phosphocholine
-
Yamauchi, K., Doi, K., Yoshida, Y., and Kinoshita, M. (1993). Archaebacterial lipids: highly proton-impermeable membranes from 1,2-diphytanyl-sn-glycero-3-phosphocholine. Biochim. Biophys. Acta 1146, 178-182.
-
(1993)
Biochim. Biophys. Acta
, vol.1146
, pp. 178-182
-
-
Yamauchi, K.1
Doi, K.2
Yoshida, Y.3
Kinoshita, M.4
-
70
-
-
33745161041
-
Thermophilic temperature optimum for Crenarchaeol synthesis and its implication for archaeal evolution
-
Zhang, C. L., Pearson, A., Li, Y.-L., Mills, G., and Wiegel, J. (2006). Thermophilic temperature optimum for Crenarchaeol synthesis and its implication for archaeal evolution. Appl. Environ. Microbiol. 72, 4419-4422.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 4419-4422
-
-
Zhang, C.L.1
Pearson, A.2
Li, Y.-L.3
Mills, G.4
Wiegel, J.5
-
71
-
-
84870799586
-
Production of branched tetraether lipids in the lower Pearl River and estuary: effects of extraction methods and impact on bGDGT proxies
-
doi:10.3389/fmicb.2011.00274
-
Zhang, C. L., Wang, J., Wei, Y., Zhu, C., Huang, L., and Dong, H. (2012). Production of branched tetraether lipids in the lower Pearl River and estuary: effects of extraction methods and impact on bGDGT proxies. Front. Microbiol. 2:274. doi:10.3389/fmicb.2011.00274
-
(2012)
Front. Microbiol.
, vol.2
, pp. 274
-
-
Zhang, C.L.1
Wang, J.2
Wei, Y.3
Zhu, C.4
Huang, L.5
Dong, H.6
-
72
-
-
0019806068
-
Thermoproteales: a novel type of extremely thermoacidophilic anaerobic archaebacteria isolated from Icelandic solfataras
-
Zillig, W., Stetter, K. O., Schäfer, W., Janekovic, D., Wunderl, S., Holz, I., et al. (1981). Thermoproteales: a novel type of extremely thermoacidophilic anaerobic archaebacteria isolated from Icelandic solfataras. Syst. Appl. Microbiol. 2, 205-227.
-
(1981)
Syst. Appl. Microbiol.
, vol.2
, pp. 205-227
-
-
Zillig, W.1
Stetter, K.O.2
Schäfer, W.3
Janekovic, D.4
Wunderl, S.5
Holz, I.6
|