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Volumn 4, Issue 12, 2010, Pages 1485-1495

[FeFe]-hydrogenase in Yellowstone National Park: Evidence for dispersal limitation and phylogenetic niche conservatism

Author keywords

FeFe hydrogenase; dispersal limitation; HydA; niche conservatism; pH; Yellowstone National Park

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIOCHLOROPHYLL; HYDROGEN; HYDROGENASE; IRON HYDROGENASE; IRON SULFUR PROTEIN;

EID: 78649448514     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2010.76     Document Type: Article
Times cited : (66)

References (56)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D. (2005). ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 0001451404 scopus 로고
    • Formation and fate of fermentation products in hot spring cyanobacterial mats
    • Anderson KL, Tayne TA, Ward DM. (1987). Formation and fate of fermentation products in hot spring cyanobacterial mats. Appl Environ Microbiol 53:2343-2352.
    • (1987) Appl. Environ. Microbiol. , vol.53 , pp. 2343-2352
    • Anderson, K.L.1    Tayne, T.A.2    Ward, D.M.3
  • 3
    • 0027708952 scopus 로고
    • Energy gases of abiogenic origin in the Earth's crust. The future of energy gases
    • Apps JA, van de Kamp PC. (1993). Energy gases of abiogenic origin in the Earth's crust. The future of energy gases. US Geol Survey 1570:81-132.
    • (1993) US Geol. Survey , vol.1570 , pp. 81-132
    • Apps, J.A.1    Van De Kamp, P.C.2
  • 4
    • 35448932094 scopus 로고    scopus 로고
    • Isolation, characterization, and ecology of sulfur-respiring Crenarchaea inhabiting acid-sulfate-chloride geothermal springs in Yellowstone National Park
    • Boyd ES, Jackson RA, Encarnacion G, Zahn JA, Beard T, Leavitt WD. et al. (2007). Isolation, characterization, and ecology of sulfur-respiring Crenarchaea inhabiting acid-sulfate-chloride geothermal springs in Yellowstone National Park. Appl Environ Microbiol 73:6669-6677.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 6669-6677
    • Boyd, E.S.1    Jackson, R.A.2    Encarnacion, G.3    Zahn, J.A.4    Beard, T.5    Leavitt, W.D.6
  • 5
    • 67649582940 scopus 로고    scopus 로고
    • 2 uptake and fixation by a thermoacidophilic microbial community attached to precipitated sulfur in a geothermal spring
    • 2 uptake and fixation by a thermoacidophilic microbial community attached to precipitated sulfur in a geothermal spring. Appl Environ Microbiol 75:4289-4296.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4289-4296
    • Boyd, E.S.1    Leavitt, W.D.2    Geesey, G.G.3
  • 6
    • 67649621650 scopus 로고    scopus 로고
    • [FeFe]-hydrogenase genetic diversity provides insight into molecular adaptation in a saline microbial mat community
    • Boyd ES, Spear JR, Peters JW. (2009b). [FeFe]-hydrogenase genetic diversity provides insight into molecular adaptation in a saline microbial mat community. Appl Environ Microbiol 75:4620-4623.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4620-4623
    • Boyd, E.S.1    Spear, J.R.2    Peters, J.W.3
  • 7
    • 0027205389 scopus 로고
    • Early evolution of photosynthesis: Clues from nitrogenase and chlorophyll iron proteins
    • Burke DH, Hearst JE, Sidow A. (1993). Early evolution of photosynthesis: clues from nitrogenase and chlorophyll iron proteins. Proc Natl Acad Sci USA 90:7134-7138.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7134-7138
    • Burke, D.H.1    Hearst, J.E.2    Sidow, A.3
  • 8
    • 75449120370 scopus 로고    scopus 로고
    • Serpentinizing fluids craft microbial habitat
    • Cardace D, Hoehler TM. (2009). Serpentinizing fluids craft microbial habitat. Northeastern Naturalist 16:272-284.
    • (2009) Northeastern Naturalist , vol.16 , pp. 272-284
    • Cardace, D.1    Hoehler, T.M.2
  • 11
    • 0022348520 scopus 로고
    • Aerobic and anaerobic microbial consumption of hydrogen in geothermal spring water
    • Conrad R, Bonjour F, Aragno M. (1985). Aerobic and anaerobic microbial consumption of hydrogen in geothermal spring water. FEMS Microbiol Lett 29:201-205.
    • (1985) FEMS Microbiol. Lett. , vol.29 , pp. 201-205
    • Conrad, R.1    Bonjour, F.2    Aragno, M.3
  • 13
    • 77149148775 scopus 로고    scopus 로고
    • Relative roles of niche and neutral processes in structuring a soil microbial community
    • Dumbrell AJ, Nelson M, Helgason T, Dytham C, Fitter AH. (2010). Relative roles of niche and neutral processes in structuring a soil microbial community. ISME J 4:337-345.
    • (2010) ISME J. , vol.4 , pp. 337-345
    • Dumbrell, A.J.1    Nelson, M.2    Helgason, T.3    Dytham, C.4    Fitter, A.H.5
  • 14
    • 58349112131 scopus 로고    scopus 로고
    • Geochemistry and dynamics of the yellowstone national park hydrothermal system
    • Inskeep WP, McDermott TR eds, Montana State University: Bozeman
    • Fournier RO. (2005). Geochemistry and dynamics of the Yellowstone National Park Hydrothermal System. In: Inskeep WP, McDermott TR (eds). Geothermal Biology and Geochemistry in Yellowstone National Park. Montana State University: Bozeman, pp 143-162.
    • (2005) Geothermal Biology and Geochemistry in Yellowstone National Park , pp. 143-162
    • Fournier, R.O.1
  • 15
    • 0036523377 scopus 로고    scopus 로고
    • Hydrogenases: Hydrogen-activating enzymes
    • Frey M. (2002). Hydrogenases: hydrogen-activating enzymes. Chembiochem 3:153-160.
    • (2002) Chembiochem , vol.3 , pp. 153-160
    • Frey, M.1
  • 16
    • 0026780910 scopus 로고
    • The deep, hot biosphere
    • Gold T. (1992). The deep, hot biosphere. Proc Natl Acad Sci USA 89:6045-6049.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 6045-6049
    • Gold, T.1
  • 17
    • 37649025929 scopus 로고    scopus 로고
    • The ecodist package for dissimilarity-based analysis of ecological data
    • Goslee SC, Urban DL. (2007). The ecodist package for dissimilarity-based analysis of ecological data. J Stat Softw 22:1-19.
    • (2007) J. Stat. Softw , vol.22 , pp. 1-19
    • Goslee, S.C.1    Urban, D.L.2
  • 19
    • 0035913370 scopus 로고    scopus 로고
    • The role of microbial mats in the production of reduced gases on the early Earth
    • Hoehler TM, Bebout BM, Des Marais DJ. (2001). The role of microbial mats in the production of reduced gases on the early Earth. Nature 412:324-327.
    • (2001) Nature , vol.412 , pp. 324-327
    • Hoehler, T.M.1    Bebout, B.M.2    Des Marais, D.J.3
  • 21
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • Huelsenbeck JP, Ronquist R. (2001). MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, R.2
  • 22
    • 33644821952 scopus 로고    scopus 로고
    • Geomicrobiology of acid-sulfate-chloride springs in Yellowstone National Park
    • Inskeep WP, McDermott TR eds, Montana State University: Bozeman
    • Inskeep WP, McDermott TR. (2005). Geomicrobiology of acid-sulfate- chloride springs in Yellowstone National Park. In: Inskeep WP, McDermott TR (eds). Geothermal Biology and Geochemistry in Yellowstone National Park. Montana State University: Bozeman, pp 143-162.
    • (2005) Geothermal Biology and Geochemistry in Yellowstone National Park , pp. 143-162
    • Inskeep, W.P.1    McDermott, T.R.2
  • 23
    • 0022197949 scopus 로고
    • Geomicrobiology of deepsea hydrothermal vents
    • Jannasch HW, Mottl MJ. (1985). Geomicrobiology of deepsea hydrothermal vents. Science 229:717-725.
    • (1985) Science , vol.229 , pp. 717-725
    • Jannasch, H.W.1    Mottl, M.J.2
  • 24
    • 1242296549 scopus 로고    scopus 로고
    • Model selection in ecology and evolution
    • Johnson JB, Omland KS. (2004). Model selection in ecology and evolution. Trends Ecol Evol 19:101-108.
    • (2004) Trends Ecol. Evol. , vol.19 , pp. 101-108
    • Johnson, J.B.1    Omland, K.S.2
  • 26
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber CL, Hamady M, Knight R, Fierer N. (2009). Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75:5111-5120.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 27
    • 33846907008 scopus 로고    scopus 로고
    • Cyanidia (Cyanidiales) population diversity and dynamics in an acid-sulfatechloride spring in Yellowstone National Park
    • Lehr CR, Frank SD, Norris TB, D'Imperio S, Kalinin AV, Toplin JA et al. (2007). Cyanidia (Cyanidiales) population diversity and dynamics in an acid-sulfatechloride spring in Yellowstone National Park. J Phycol 43:3-14.
    • (2007) J. Phycol. , vol.43 , pp. 3-14
    • Lehr, C.R.1    Frank, S.D.2    Norris, T.B.3    D'Imperio, S.4    Kalinin, A.V.5    Toplin, J.A.6
  • 31
    • 0034636310 scopus 로고    scopus 로고
    • The diversity-stability debate
    • McCann KS. (2000). The diversity-stability debate. Nature 405:228-233.
    • (2000) Nature , vol.405 , pp. 228-233
    • McCann, K.S.1
  • 32
    • 0342368876 scopus 로고    scopus 로고
    • 2 the universal energy source for long-term survival?
    • 2 the universal energy source for long-term survival? Microbiol Ecol 38:307-320.
    • (2000) Microbiol. Ecol. , vol.38 , pp. 307-320
    • Morita, R.Y.1
  • 34
    • 33644831513 scopus 로고    scopus 로고
    • Ground water to surface water: Chemistry of thermal outflows in Yellowstone National Park
    • Inskeep WP, McDermott TR eds, Montana State University: Bozeman
    • Nordstrom DK, Ball JW, McCleskey RB. (2005). Ground water to surface water: chemistry of thermal outflows in Yellowstone National Park. In: Inskeep WP, McDermott TR (eds). Geothermal Biology and Geochemistry in Yellowstone National Park. Montana State University: Bozeman, pp 143-162.
    • (2005) Geothermal Biology and Geochemistry in Yellowstone National Park , pp. 143-162
    • Nordstrom, D.K.1    Ball, J.W.2    McCleskey, R.B.3
  • 35
    • 22544456596 scopus 로고    scopus 로고
    • Have olivine, will gas: Serpentinization and the abiogenic production of methane on Mars
    • Oze C, Sharma M. (2005). Have olivine, will gas: serpentinization and the abiogenic production of methane on Mars. Geophys Res Lett 32:L10203.
    • (2005) Geophys Res. Lett. , vol.32
    • Oze, C.1    Sharma, M.2
  • 36
    • 33846336152 scopus 로고    scopus 로고
    • 2 in planetary surfaces
    • 2 in planetary surfaces. Icarus 186:557-561.
    • (2007) Icarus , vol.186 , pp. 557-561
    • Oze, C.1    Sharma, M.2
  • 38
    • 32444450670 scopus 로고    scopus 로고
    • Vienna, Austria
    • R Development Core Team (2010). R Foundation for Statistical Computing: Vienna, Austria. http://www.r-project.org/contributors.html.
    • (2010) R Foundation for Statistical Computing
  • 39
    • 0001030739 scopus 로고
    • Microelectrode studies of interstitial water chemistry and photosynthetic activity in a hot spring microbial mat
    • Revsbech NP, Ward DM. (1984). Microelectrode studies of interstitial water chemistry and photosynthetic activity in a hot spring microbial mat. Appl Environ Microbiol 48:270-275.
    • (1984) Appl. Environ. Microbiol. , vol.48 , pp. 270-275
    • Revsbech, N.P.1    Ward, D.M.2
  • 40
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
    • Sanderson MJ. (2002). Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol Biol Evol 19:101-109.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 101-109
    • Sanderson, M.J.1
  • 41
    • 0030871461 scopus 로고    scopus 로고
    • Energetics of syntrophic cooperation in methanogenic degradation
    • Schink B. (1997). Energetics of syntrophic cooperation in methanogenic degradation. Microbiol Mol Biol Rev 61:262-280.
    • (1997) Microbiol. Mol. Biol. Rev. , vol.61 , pp. 262-280
    • Schink, B.1
  • 42
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J. (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71:1501-1506.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 43
    • 37749014722 scopus 로고    scopus 로고
    • Quantitative habitability
    • Shock EL, Holland ME. (2007). Quantitative habitability. Astrobiology 7:839-851.
    • (2007) Astrobiology , vol.7 , pp. 839-851
    • Shock, E.L.1    Holland, M.E.2
  • 45
    • 0028972702 scopus 로고
    • Lithoautotrophic microbia, ecosystems in deep basalt aquifers
    • Stevens TO, McKinley JP. (1995). Lithoautotrophic microbia, ecosystems in deep basalt aquifers. Science 270:450-454.
    • (1995) Science , vol.270 , pp. 450-454
    • Stevens, T.O.1    McKinley, J.P.2
  • 46
    • 0034050531 scopus 로고    scopus 로고
    • 2 production from basalt-water reactions and implications for aquifer biogeochemistry
    • 2 production from basalt-water reactions and implications for aquifer biogeochemistry. Environ Sci Technol 34:826-831.
    • (2000) Environ. Sci. Technol. , vol.34 , pp. 826-831
    • Stevens, T.O.1    McKinley, J.P.2
  • 48
    • 0030881030 scopus 로고    scopus 로고
    • The influence of functional diversity and composition on ecosystem processes
    • Tilman D, Knops J, Wedin D, Reich P, Ritchie M, Siemann E. (1997). The influence of functional diversity and composition on ecosystem processes. Science 277:1300-1302.
    • (1997) Science , vol.277 , pp. 1300-1302
    • Tilman, D.1    Knops, J.2    Wedin, D.3    Reich, P.4    Ritchie, M.5    Siemann, E.6
  • 50
    • 36549000721 scopus 로고    scopus 로고
    • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
    • Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT et al. (2007). Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450:560-565.
    • (2007) Nature , vol.450 , pp. 560-565
    • Warnecke, F.1    Luginbuhl, P.2    Ivanova, N.3    Ghassemian, M.4    Richardson, T.H.5    Stege, J.T.6
  • 51
    • 0033929368 scopus 로고    scopus 로고
    • Exploring the phylogenetic structure of ecological communities: An example for rain forest trees
    • Webb CO. (2000). Exploring the phylogenetic structure of ecological communities: an example for rain forest trees. Am Naturalist 156:145-155.
    • (2000) Am. Naturalist , vol.156 , pp. 145-155
    • Webb, C.O.1
  • 52
    • 51749095104 scopus 로고    scopus 로고
    • Phylocom: Software for the analysis of phylogenetic community structure and character evolution
    • Webb CO, Ackerly DD, Kembel SW. (2008). Phylocom: software for the analysis of phylogenetic community structure and character evolution. Bioinformatics 24:2098-2100.
    • (2008) Bioinformatics , vol.24 , pp. 2098-2100
    • Webb, C.O.1    Ackerly, D.D.2    Kembel, S.W.3
  • 53
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic Archaea
    • Whitaker RJ, Grogan DW, Taylor JW. (2003). Geographic barriers isolate endemic populations of hyperthermophilic Archaea. Science 301:976-978.
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3
  • 54
    • 1642281351 scopus 로고    scopus 로고
    • Speciation and ecology revisited: Phylogenetic niche conservatism and the origin of species
    • Wiens JJ. (2004). Speciation and ecology revisited: phylogenetic niche conservatism and the origin of species. Evolution 58:193-197.
    • (2004) Evolution , vol.58 , pp. 193-197
    • Wiens, J.J.1
  • 55
    • 0001279474 scopus 로고
    • Bull AT, Slater JH eds, Academic Press: London, England
    • Wolin MJ. (1982) In: Bull AT, Slater JH (eds). Microbial Interactions and Communities, Vol. 1. Academic Press: London, England, pp 323-356.
    • (1982) Microbial. Interactions and Communities , vol.1 , pp. 323-356
    • Wolin, M.J.1


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