-
1
-
-
84868574432
-
Pyrosequencing analysis of the bacterial communities in the guts of honey bees Apis cerana and Apis mellifera in Korea
-
AHN, J H; HONG, I P; BOK, J I; KIM, B Y; SONG, J; WEON, H Y (2012) Pyrosequencing analysis of the bacterial communities in the guts of honey bees Apis cerana and Apis mellifera in Korea. Journal of Microbiology 50(5):735-45. http://dx.doi.org/10.1007/s12275-012-2188-0
-
(2012)
Journal of Microbiology
, vol.50
, Issue.5
, pp. 735-745
-
-
Ahn, J.H.1
Hong, I.P.2
Bok, J.I.3
Kim, B.Y.4
Song, J.5
Weon, H.Y.6
-
2
-
-
0025183708
-
Basic local alignment search tool
-
ALTSCHUL, S F; GISH, W; MILLER, W; MYERS, E W; LIPMAN, D J (1990) Basic local alignment search tool. The Journal of Molecular Biology 215(3):403-410. http://dx.doi.org/10.1016/S0022-2836 (05) 80360-2
-
(1990)
The Journal of Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
42349093774
-
Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
-
AMANN, R; FUCHS, B M (2008) Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nature Reviews Microbiology 6(5):339-348. http://dx.doi.org/10.1038/nrmicro1888
-
(2008)
Nature Reviews Microbiology
, vol.6
, Issue.5
, pp. 339-348
-
-
Amann, R.1
Fuchs, B.M.2
-
4
-
-
78650161976
-
Quantifying microbial communities with 454 pyrosequencing: Does read abundance count?
-
AMEND, A S; SEIFERT, K A; BRUNS, T D (2010) Quantifying microbial communities with 454 pyrosequencing: does read abundance count? Molecular Ecology 19(24):5555-5565. http://dx.doi.org/10.1111/j.1365-294X.2010.04898.x
-
(2010)
Molecular Ecology
, vol.19
, Issue.24
, pp. 5555-5565
-
-
Amend, A.S.1
Seifert, K.A.2
Bruns, T.D.3
-
5
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
ANDERSON, M J (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecology 26(1):32-46. http://dx.doi.org/10.1111/j. 1442-9993.2001.01070.pp. x
-
(2001)
Austral Ecology
, vol.26
, Issue.1
, pp. 32-46
-
-
Anderson, M.J.1
-
6
-
-
33847748265
-
Bacterial community structures in honey bee intestines and their response to two insecticidal proteins
-
BABENDREIER, D; JOLLER, D; ROMEIS, J; BIGLER, F; WIDMER, F (2007) Bacterial community structures in honey bee intestines and their response to two insecticidal proteins. FEMS Microbiology Ecology 59(3):600-610. http://dx.doi.org/10.1111/j.1574-6941.2006.00249.x
-
(2007)
FEMS Microbiology Ecology
, vol.59
, Issue.3
, pp. 600-610
-
-
Babendreier, D.1
Joller, D.2
Romeis, J.3
Bigler, F.4
Widmer, F.5
-
8
-
-
0042529205
-
Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?
-
BEHRENS, S; FUCHS, B M; MUELLER, F; AMANN, R (2003) Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit? Applied and Environmental Microbiology 69(8):4935-4941. http://dx.doi.org/10.1128/AEM.69.8.4935-4941.2003
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.8
, pp. 4935-4941
-
-
Behrens, S.1
Fuchs, B.M.2
Mueller, F.3
Amann, R.4
-
9
-
-
0020466191
-
Electrophoretic patterns of proteins in the genus Bifidobacterium and proposal of four new species
-
BIAVATI, B; SCARDOVI, V; MOORE, W E C (1982) Electrophoretic patterns of proteins in the genus Bifidobacterium and proposal of four new species. International Journal of Systematic and Evolutionary Microbiology 32(3):358-373. http://dx.doi.org/10.1099/00207713-32-3-358
-
(1982)
International Journal of Systematic and Evolutionary Microbiology
, vol.32
, Issue.3
, pp. 358-373
-
-
Biavati, B.1
Scardovi, V.2
Moore, W.E.C.3
-
10
-
-
84866673240
-
Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut
-
BOTTACINI, F; MILANI, C; TURRON, I F; SÁNCHEZ, B; FORONI, E; DURANTI, S; SERAFINI, F; VIAPPIANI, A; STRATI, F; FERRARINI, A; DELLEDONNE, M; HENRISSAT, B; COUTINHO, P; FITZGERALD, G F; MARGOLLES, A; VAN SINDEREN, D; VENTURA, M (2012) Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One. 7(9):e44229. http://dx.doi.org/10.1371/journal.pone.0044229
-
(2012)
PLoS One.
, vol.7
, Issue.9
-
-
Bottacini, F.1
Milani, C.2
Turron, I.F.3
Sánchez, B.4
Foroni, E.5
Duranti, S.6
Serafini, F.7
Viappiani, A.8
Strati, F.9
Ferrarini, A.10
Delledonne, M.11
Henrissat, B.12
Coutinho, P.13
Fitzgerald, G.F.14
Margolles, A.15
Van Sinderen, D.16
Ventura, M.17
-
11
-
-
0000286531
-
An ordination of the upland forest communities of southern Wisconsin
-
BRAY, J R; CURTIS, J T (1957) An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs 27(4):325-349. http://dx.doi.org/10.2307/1942268
-
(1957)
Ecological Monographs
, vol.27
, Issue.4
, pp. 325-349
-
-
Bray, J.R.1
Curtis, J.T.2
-
12
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
BRULC, J M; ANTONOPOULOS, D A; BERG MILLER, M E; WILSON, M K; YANNARELL, A C (2009) Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proceedings of the National Academy of Science 106(6):1948-1953.
-
(2009)
Proceedings of the National Academy of Science
, vol.106
, Issue.6
, pp. 1948-1953
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Berg Miller, M.E.3
Wilson, M.K.4
Yannarell, A.C.5
-
13
-
-
84859231246
-
Estimating population diversity with CatchAll
-
BUNGE, J; WOODARD, L; BÖHNING, D; FOSTER, J A; CONNOLLY, S; ALLEN, H K (2012) Estimating population diversity with CatchAll. Bioinformatics 28(7):1045-1047. http://dx.doi.org/10.1093/bioinformatics/bts075
-
(2012)
Bioinformatics
, vol.28
, Issue.7
, pp. 1045-1047
-
-
Bunge, J.1
Woodard, L.2
Böhning, D.3
Foster, J.A.4
Connolly, S.5
Allen, H.K.6
-
14
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
CAPORASO, J G; BITTINGER, K; BUSHMAN, F D; DESANTIS, T Z; ANDERSEN, G L; KNIGHT, R (2010a) PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26(2):266-267. http://dx.doi.org/10.1093/ bioinformatics/btp636
-
(2010)
Bioinformatics
, vol.26
, Issue.2
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
Desantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
15
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
CAPORASO, J G; KUCZYNSKI, J; STOMBAUGH, J; BITTINGER, K; BUSHMAN, F D; COSTELLO, E K; FIERER, N; PEÑA, A G; GOODRICH, J K; GORDON, J I; HUTTLEY, G A; KELLEY, S T; KNIGHTS, D; KOENIG, J E; LEY, R E; LOZUPONE, C A; MCDONALD, D; MUEGGE, B D; PIRRUNG, M; REEDER, J; SEVINSKY, J R; TURNBAUGH, P J; WALTERS, W A; WIDMANN, J; YATSUNENKO, T; ZANEVELD, J; KNIGHT, R (2010b) QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7(5):335-336. http://dx.doi.org/10.1038/nmeth.f.303
-
(2010)
Nature Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
16
-
-
84875390095
-
Standard methods for Apis mellifera anatomy and dissection
-
V Dietemann; J D Ellis; P Neumann Eds
-
CARRECK, N L; ANDREE, M; BRENT, C S; COX-FOSTER, D; DADE, H A; ELLIS, J D; HATJINA, F; VANENGELSDORP, D (2013) Standard methods for Apis mellifera anatomy and dissection. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(4):http://dx.doi.org/10.3896/IBRA.1.52.4.03
-
(2013)
The COLOSS BEEBOOK, Volume I: Standard Methods for Apis Mellifera Research. Journal of Apicultural Research
, vol.52
, Issue.4
-
-
Carreck, N.L.1
Andree, M.2
Brent, C.S.3
Cox-Foster, D.4
Dade, H.A.5
Ellis, J.D.6
Hatjina, F.7
Vanengelsdorp, D.8
-
17
-
-
0001463548
-
Nonparametric estimation of the number of classes in a population
-
CHAO, A (1984) Nonparametric estimation of the number of classes in a population. Scandinavian Journal of Statistics 11(4):265-270. http://dx.doi.org/10.2307/4615964
-
(1984)
Scandinavian Journal of Statistics
, vol.11
, Issue.4
, pp. 265-270
-
-
Chao, A.1
-
18
-
-
84865172013
-
Pathogen webs in collapsing honey bee colonies
-
CORNMAN, R S; TARPY, D R; CHEN, Y; JEFFREYS, L; LOPEZ, D; PETTIS, J S; VANENGELSDORP, D; EVANS, J D (2012) Pathogen webs in collapsing honey bee colonies. PloS One 7(8):e43562. http://dx.doi.org/10.1371/journal.pone.0043562
-
(2012)
PloS One
, vol.7
, Issue.8
-
-
Cornman, R.S.1
Tarpy, D.R.2
Chen, Y.3
Jeffreys, L.4
Lopez, D.5
Pettis, J.S.6
Vanengelsdorp, D.7
Evans, J.D.8
-
19
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
COX-FOSTER, D L; CONLAN, S; HOLMES, E C; PALACIOS, G; EVANS, J D; MORAN, N A QUAN, P L; BRIESE, T; HORNIG, M; GEISER, D M; MARTINSON, V; VANENGELSDORP, D; KALKSTEIN, A L; DRYSDALE, A; HUI, J; ZHAI, J; CUI, L; HUTCHISON, S K; SIMONS, J F; EGHOLM, M; PETTIS, J S; LIPKIN, W I (2007) A metagenomic survey of microbes in honey bee colony collapse disorder. Science. 318(5848):283-287. http://dx.doi.org/10.1126/science.1146498
-
(2007)
Science.
, vol.318
, Issue.5848
, pp. 283-287
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
Palacios, G.4
Evans, J.D.5
Moran, N.A.6
Quan, P.L.7
Briese, T.8
Hornig, M.9
Geiser, D.M.10
Martinson, V.11
Vanengelsdorp, D.12
Kalkstein, A.L.13
Drysdale, A.14
Hui, J.15
Zhai, J.16
Cui, L.17
Hutchison, S.K.18
Simons, J.F.19
Egholm, M.20
Pettis, J.S.21
Lipkin, W.I.22
more..
-
20
-
-
84355163066
-
Illumina-based analysis of microbial community diversity
-
DEGNAN, P H; OCHMAN H (2012) Illumina-based analysis of microbial community diversity. The ISME Journal 6(1):183-194. http://dx.doi.org/10.1038/ ismej.2011.74
-
(2012)
The ISME Journal
, vol.6
, Issue.1
, pp. 183-194
-
-
Degnan, P.H.1
Ochman, H.2
-
21
-
-
84875391180
-
Standard methods for American foulbrood research
-
V Dietemann; J D Elis; P Neumann Eds
-
DE GRAAF, D C; ALIPPI, A M; ANTÚNEZ, K; ARONSTEIN, K A; BUDGE, G; DE KOKER, D; DE SMET, L; DINGMAN, D W; EVANS, J D; FOSTER, L J; FÜNFHAUS, A; GARCIA-GONZALEZ, E; GREGORC, A; HUMAN, H; MURRAY, K D; NGUYEN, B K; POPPINGA, L; SPIVAK, M; VANENGELSDORP, D; WILKINS, S; GENERSCH, E (2013) Standard methods for American foulbrood research. In V Dietemann; J D Elis; P Neumann (Eds) The COLOSS BEEBOOK, Volume II: standard methods for Apis mellifera pest and pathogen research. Journal of Apicultural Research 52(1):http://dx.doi.org/10.3896/IBRA. 1.52.1.11
-
(2013)
The COLOSS BEEBOOK, Volume II: Standard Methods for Apis Mellifera Pest and Pathogen Research. Journal of Apicultural Research
, vol.52
, Issue.1
-
-
De Graaf, D.C.1
Alippi, A.M.2
Antúnez, K.3
Aronstein, K.A.4
Budge, G.5
De Koker, D.6
De Smet, L.7
Dingman, D.W.8
Evans, J.D.9
Foster, L.J.10
Fünfhaus, A.11
Garcia-Gonzalez, E.12
Gregorc, A.13
Human, H.14
Murray, K.D.15
Nguyen, B.K.16
Poppinga, L.17
Spivak, M.18
Vanengelsdorp, D.19
Wilkins, S.20
Genersch, E.21
more..
-
22
-
-
84875393362
-
Standard methods for virus research in Apis mellifera
-
V Dietemann; J D Ellis; P Neumann Eds
-
DE MIRANDA, J R; BAILEY, L; BALL, B V; BLANCHARD, P; BUDGE, G; CHEJANOVSKY, N; CHEN, Y-P; GAUTHIER, L; GENERSCH, E; DE GRAAF, D; RIBIÈRE, M; RYABOV, E; DE SMET, L; VAN der STEEN, J J M (2013) Standard methods for virus research in Apis mellifera. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume II: standard methods for Apis mellifera pest and pathogen research. Journal of Apicultural Research 52(4):http://dx.doi.org/10.3896/IBRA.1.52.4.22
-
(2013)
The COLOSS BEEBOOK, Volume II: Standard Methods for Apis Mellifera Pest and Pathogen Research. Journal of Apicultural Research
, vol.52
, Issue.4
-
-
De Miranda, J.R.1
Bailey, L.2
Ball, B.V.3
Blanchard, P.4
Budge, G.5
Chejanovsky, N.6
Chen, Y.-P.7
Gauthier, L.8
Genersch, E.9
De Graaf, D.10
Ribière, M.11
Ryabov, E.12
De Smet, L.13
Van Der Steen, J.J.M.14
-
23
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
EDGAR, R C (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19):2460-2461. http://dx.doi.org/10.1093/ bioinformatics/btq461
-
(2010)
Bioinformatics
, vol.26
, Issue.19
, pp. 2460-2461
-
-
Edgar, R.C.1
-
24
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
EDGAR, R C; HAAS, B J; CLEMENTE, J C; QUINCE, C; KNIGHT, R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27(16):2194-2200. http://dx.doi.org/10.1093/bioinformatics/btr381
-
(2011)
Bioinformatics
, vol.27
, Issue.16
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
25
-
-
0031801913
-
Lactobacillus kunkeei sp
-
EDWARDS, C G; HAAG, K M; COLLINS, M D; HUTSON, R A; HUANG, Y C (1998) Lactobacillus kunkeei sp. nov.: a spoilage organism associated with grape juice fermentations. Journal of Applied Microbiology 84(5):698-702. http://dx.doi.org/10.1046/j.1365-2672.1998.00399.x
-
(1998)
Nov.: A Spoilage Organism Associated with Grape Juice Fermentations. Journal of Applied Microbiology
, vol.84
, Issue.5
, pp. 698-702
-
-
Edwards, C.G.1
Haag, K.M.2
Collins, M.D.3
Hutson, R.A.4
Huang, Y.C.5
-
26
-
-
0001765472
-
An antigenic analysis of Lactobacillus acidophilus
-
EFTHYMIOU, C; HANSEN, P A (1962) An antigenic analysis of Lactobacillus acidophilus. The Journal of Infectious Diseases 110(3):258-267. http://dx.doi.org/10.1093/infdis/110.3.258
-
(1962)
The Journal of Infectious Diseases
, vol.110
, Issue.3
, pp. 258-267
-
-
Efthymiou, C.1
Hansen, P.A.2
-
27
-
-
84884245135
-
Frischella perrara, gen. Nov., sp. Nov. A gammaproteobacterium isolated from the gut of Apis mellifera
-
press
-
ENGEL, P E; KWONG, W; MORAN, N A (2013) Frischella perrara, gen. nov., sp. nov. a gammaproteobacterium isolated from the gut of Apis mellifera. International Journal of Systematic and Evolutionary Microbiology (in press).
-
(2013)
International Journal of Systematic and Evolutionary Microbiology
-
-
Engel, P.E.1
Kwong, W.2
Moran, N.A.3
-
29
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
ENGELBREKTSON, A; KUNIN, V; WRIGHTON, K C; ZVENIGORODSKY, N; CHEN, F; OCHMAN, H; HUGENHOLTZ, P (2010) Experimental factors affecting PCR-based estimates of microbial species richness and evenness. The ISME Journal 4(5):642-647. http://dx.doi.org/10.1038/ismej.2009.153
-
(2010)
The ISME Journal
, vol.4
, Issue.5
, pp. 642-647
-
-
Engelbrektson, A.1
Kunin, V.2
Wrighton, K.C.3
Zvenigorodsky, N.4
Chen, F.5
Ochman, H.6
Hugenholtz, P.7
-
30
-
-
33744481284
-
Antagonistic interactions between honey bee bacterial symbionts and implications for disease
-
EVANS, J D; ARMSTRONG, T N (2006) Antagonistic interactions between honey bee bacterial symbionts and implications for disease. BMC Ecology 6:4. http://dx.doi.org/10.1186/1472-6785-6-4
-
(2006)
BMC Ecology
, vol.6
, pp. 4
-
-
Evans, J.D.1
Armstrong, T.N.2
-
31
-
-
84875401177
-
Standard methodologies for molecular research in Apis mellifera
-
V Dietemann; J D Ellis; P Neumann Eds
-
EVANS, J D; SCHWARZ, R S; CHEN, Y P; BUDGE, G; CORNMAN, R S; DE LA RUA, P; DE MIRANDA, J R; FORET, S; FOSTER, L; GAUTHIER, L; GENERSCH, E; GISDER, S; JAROSCH, A; KUCHARSKI, R; LOPEZ, D; LUN, C M; MORITZ, R F A; MALESZKA, R; MUÑOZ, I; PINTO, M A (2013) Standard methodologies for molecular research in Apis mellifera. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK, Volume I: standard methods for Apis mellifera research. Journal of Apicultural Research 52(4):http://dx.doi.org/10.3896/IBRA.1.52.4.11
-
(2013)
The COLOSS BEEBOOK, Volume I: Standard Methods for Apis Mellifera Research. Journal of Apicultural Research
, vol.52
, Issue.4
-
-
Evans, J.D.1
Schwarz, R.S.2
Chen, Y.P.3
Budge, G.4
Cornman, R.S.5
De La Rua, P.6
De Miranda, J.R.7
Foret, S.8
Foster, L.9
Gauthier, L.10
Genersch, E.11
Gisder, S.12
Jarosch, A.13
Kucharski, R.14
Lopez, D.15
Lun, C.M.16
Moritz, R.F.A.17
Maleszka, R.18
Muñoz, I.19
Pinto, M.A.20
more..
-
32
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
-
EXCOFFIER, L; SMOUSE, P E; QUATTRO, J M (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131(2):479-491.
-
(1992)
Genetics
, vol.131
, Issue.2
, pp. 479-491
-
-
Excoffier, L.1
Smouse, P.E.2
Quattro, J.M.3
-
34
-
-
73449086690
-
Novel lactic acid bacteria inhibiting Paenibacillus larvae in honey bee larvae
-
FORSGREN, E; OLOFSSON, T C; VÁSQUEZ, A; FRIES, I (2010) Novel lactic acid bacteria inhibiting Paenibacillus larvae in honey bee larvae. Apidologie 41(1):99-108. http://dx.doi.org/10.1051/apido/2009065
-
(2010)
Apidologie
, vol.41
, Issue.1
, pp. 99-108
-
-
Forsgren, E.1
Olofsson, T.C.2
Vásquez, A.3
Fries, I.4
-
35
-
-
84875403219
-
Standard methods for Nosema research
-
V Dietemann; J D Ellis; P Neumann Eds
-
FRIES, I; CHAUZAT, M-P; CHEN, Y-P; DOUBLET, V; GENERSCH, E; GISDER, S; HIGES, M; MCMAHON, D P; MARTÍN-HERNÁNDEZ, R; NATSOPOULOU, M; PAXTON, R J; TANNER, G; WEBSTER, T C; WILLIAMS, G R (2013) Standard methods for Nosema research. In V Dietemann; J D Ellis; P Neumann (Eds) The COLOSS BEEBOOK: Volume II: Standard methods for Apis mellifera pest and pathogen research. Journal of Apicultural Research 52(1):http://dx.doi.org/10.3896/IBRA.1.52.1.14
-
(2013)
The COLOSS BEEBOOK: Volume II: Standard Methods for Apis Mellifera Pest and Pathogen Research. Journal of Apicultural Research
, vol.52
, Issue.1
-
-
Fries, I.1
Chauzat, M.-P.2
Chen, Y.-P.3
Doublet, V.4
Genersch, E.5
Gisder, S.6
Higes, M.7
McMahon, D.P.8
Martín-Hernández, R.9
Natsopoulou, M.10
Paxton, R.J.11
Tanner, G.12
Webster, T.C.13
Williams, G.R.14
-
36
-
-
0031789907
-
Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labelled oligonucleotide probes
-
FUCHS, B M; WALLNER, G; BEISKER, W; SCHWIPPL, I; LUDWIG, W; AMANN, R (1998) Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labelled oligonucleotide probes. Applied and Environmental Microbiology 64(12):4973-4982. http://dx.doi.org/10.1128/AEM.67.2. 961-968.2001
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.12
, pp. 4973-4982
-
-
Fuchs, B.M.1
Wallner, G.2
Beisker, W.3
Schwippl, I.4
Ludwig, W.5
Amann, R.6
-
37
-
-
0033227444
-
Acetone preservation: A practical technique for molecular analysis
-
FUKATSU, T (1999) Acetone preservation: a practical technique for molecular analysis. Molecular Ecology 8(11):1935-1945. http://dx.doi.org/10. 1046/j.1365-294x.1999.00795.x
-
(1999)
Molecular Ecology
, vol.8
, Issue.11
, pp. 1935-1945
-
-
Fukatsu, T.1
-
38
-
-
0032286008
-
Specific detection of intracellular symbiotic bacteria of aphids by oligonucleotideprobed in situ hybridization
-
FUKATSU, T; WATANABE, K; SEKIGUCHI, Y (1998) Specific detection of intracellular symbiotic bacteria of aphids by oligonucleotideprobed in situ hybridization. Applied Entomology and Zoology. 33(3):461-472.
-
(1998)
Applied Entomology and Zoology.
, vol.33
, Issue.3
, pp. 461-472
-
-
Fukatsu, T.1
Watanabe, K.2
Sekiguchi, Y.3
-
39
-
-
0017963940
-
Bacteria belonging to the genus Bacillus isolated from selected organs of queen honey bees, Apis mellifera
-
GILLIAM, M (1978) Bacteria belonging to the genus Bacillus isolated from selected organs of queen honey bees, Apis mellifera. Journal of Invertebrate Pathology 31(3):389-391. http://dx.doi.org/10.1016/0022-2011 (78) 90235-5
-
(1978)
Journal of Invertebrate Pathology
, vol.31
, Issue.3
, pp. 389-391
-
-
Gilliam, M.1
-
40
-
-
0000963292
-
Fungi isolated from the intestinal contents of foraging worker honey bees, Apis mellifera
-
GILLIAM, M; PREST, D B (1972) Fungi isolated from the intestinal contents of foraging worker honey bees, Apis mellifera. Journal of Invertebrate Pathology 20(1):101-103. http://dx.doi.org/10.1016/0022-2011 (72) 90087-0
-
(1972)
Journal of Invertebrate Pathology
, vol.20
, Issue.1
, pp. 101-103
-
-
Gilliam, M.1
Prest, D.B.2
-
41
-
-
38249036498
-
Microbiology of faeces of the larval honey bee, Apis mellifera
-
GILLIAM, M; PREST, D B (1987) Microbiology of faeces of the larval honey bee, Apis mellifera. Journal of Invertebrate Pathology 49(1):70-75. http://dx.doi.org/10.1016/0022-2011 (87) 90127-3
-
(1987)
Journal of Invertebrate Pathology
, vol.49
, Issue.1
, pp. 70-75
-
-
Gilliam, M.1
Prest, D.B.2
-
42
-
-
0015958009
-
Enterobacteriaceae isolated from foraging worker honey bees, Apis mellifera
-
GILLIAM, M; VALENTINE, D K (1974) Enterobacteriaceae isolated from foraging worker honey bees, Apis mellifera. Journal of Invertebrate Pathology 23(1):38-41. http://dx.doi.org/10.1016/0022-2011 (74) 90069-X
-
(1974)
Journal of Invertebrate Pathology
, vol.23
, Issue.1
, pp. 38-41
-
-
Gilliam, M.1
Valentine, D.K.2
-
43
-
-
0016259576
-
Yeasts isolated from honey bees, Apis mellifera, fed 2, 4-D and antibiotics
-
GILLIAM, M; WICKERHAM, L J; MORTON, H L; MARTIN, R D (1974) Yeasts isolated from honey bees, Apis mellifera, fed 2, 4-D and antibiotics. Journal of Invertebrate Pathology 24(3):349-356. http://dx.doi.org/10.1016/0022-2011 (74) 90143-8
-
(1974)
Journal of Invertebrate Pathology
, vol.24
, Issue.3
, pp. 349-356
-
-
Gilliam, M.1
Wickerham, L.J.2
Morton, H.L.3
Martin, R.D.4
-
44
-
-
0004093430
-
-
4th Ed.. Sinauer Associates, Inc.; Sunderland, Massachusetts, USA
-
GOTELLI, N J (2008) A primer of ecology (4th Ed.). Sinauer Associates, Inc.; Sunderland, Massachusetts, USA. 290 pp.
-
(2008)
A Primer of Ecology
, pp. 290
-
-
Gotelli, N.J.1
-
45
-
-
0034870192
-
Quantifying biodiversity: Procedures and pitfalls in the measurement and comparison of species richness
-
GOTELLI, N J; COLWELL, R K (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecology Letters 4(4):379-391. http://dx.doi.org/10.1046/j.1461-0248.2001.00230.x
-
(2001)
Ecology Letters
, vol.4
, Issue.4
, pp. 379-391
-
-
Gotelli, N.J.1
Colwell, R.K.2
-
46
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
HAAS, B J; GEVERS, D; EARL, A M; FELDGARDEN, M; WARD, D V; GIANNOUKOS, G; CIULLA, D; TABBAA, D; HIGHLANDER, S K; SODERGREN, E; METHÉ, B; DESANTIS, T Z; HUMAN MICROBIOME CONSORTIUM; PETROSINO, J F; KNIGHT, R; BIRREN, B W (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Research 21(3):494-504. http://dx.doi.org/10.1101/gr.112730.110
-
(2011)
Genome Research
, vol.21
, Issue.3
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
Ciulla, D.7
Tabbaa, D.8
Highlander, S.K.9
Sodergren, E.10
Methé, B.11
Desantis, T.Z.12
Petrosino, J.F.13
Knight, R.14
Birren, B.W.15
-
47
-
-
73449128271
-
Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
HAMADY, M; LOZUPONE, C; KNIGHT, R (2009) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. The ISME Journal 4(1):17-27. http://dx.doi.org/10.1038/ismej.2009.97
-
(2009)
The ISME Journal
, vol.4
, Issue.1
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
48
-
-
77956618909
-
Genus Lactobacillus Beijerinck 1901, 212AL
-
P De Vos; G M Garrity; D Jones; N R Krieg; W Ludwig; F A Rainey; K Schleifer; W B Whitman Eds, 2nd Ed., The Firmicutes. Springer; New York, USA
-
HAMMES, W P; HERTEL, C (2009) Genus Lactobacillus Beijerinck 1901, 212AL. In P De Vos; G M Garrity; D Jones; N R Krieg; W Ludwig; F A Rainey; K Schleifer; W B Whitman (Eds). Bergey's manual of systematic bacteriology (2nd Ed.). Vol. 3, The Firmicutes. Springer; New York, USA. pp 465-490.
-
(2009)
Bergey's Manual of Systematic Bacteriology
, vol.3
, pp. 465-490
-
-
Hammes, W.P.1
Hertel, C.2
-
49
-
-
10344227692
-
Metagenomics: Application of genomics to uncultured microorganisms
-
HANDELSMAN, J (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiology and Molecular Biology Reviews 68(4):669-685. http://dx.doi.org/10.1128/MMBR.68.4.669-685.2004
-
(2004)
Microbiology and Molecular Biology Reviews
, vol.68
, Issue.4
, pp. 669-685
-
-
Handelsman, J.1
-
50
-
-
77949601825
-
CD-HIT Suite: A web server for clustering and comparing biological sequences
-
HUANG, Y; NIU, B; GAO, Y; FU, L; LI, W (2010) CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 26(5):680-682. http://dx.doi.org/10.1093/bioinformatics/btq003
-
(2010)
Bioinformatics
, vol.26
, Issue.5
, pp. 680-682
-
-
Huang, Y.1
Niu, B.2
Gao, Y.3
Fu, L.4
Li, W.5
-
51
-
-
0000752502
-
The nonconcept of species diversity: A critique and alternative parameters
-
HURLBERT, S H (1971) The nonconcept of species diversity: a critique and alternative parameters. Ecology 52(4):577-586. http://dx.doi.org/10.2307/1934145
-
(1971)
Ecology
, vol.52
, Issue.4
, pp. 577-586
-
-
Hurlbert, S.H.1
-
52
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
HUSE, S; HUBER, J; MORRISON, H (2007) Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology 8(7):R143. http://dx.doi.org/10. 1186/genomebiology.com/2007/8/7/R143
-
(2007)
Genome Biology
, vol.8
, Issue.7
-
-
Huse, S.1
Huber, J.2
Morrison, H.3
-
53
-
-
84875401444
-
Standard methods for fungal brood disease research
-
V Dietemann; J D Ellis, P Neumann Eds
-
JENSEN, A B; ARONSTEIN, K; FLORES, J M; VOJVODIC, S; PALACIO, M A; SPIVAK, M (2013) Standard methods for fungal brood disease research. In V Dietemann; J D Ellis, P Neumann (Eds) The COLOSS BEEBOOK: Volume II: Standard methods for Apis mellifera pest and pathogen research. Journal of Apicultural Research 52(1):http://dx.doi.org/10.3896/IBRA.1.52.1.13
-
(2013)
The COLOSS BEEBOOK: Volume II: Standard Methods for Apis Mellifera Pest and Pathogen Research. Journal of Apicultural Research
, vol.52
, Issue.1
-
-
Jensen, A.B.1
Aronstein, K.2
Flores, J.M.3
Vojvodic, S.4
Palacio, M.A.5
Spivak, M.6
-
54
-
-
0345392567
-
Bacterial diversity in worker adults of Apis mellifera capensis and Apis mellifera scutellata (Insecta: Hymenoptera) assessed using 16S rRNA sequences
-
JEYAPRAKASH, A; HOY, M A; ALLSOPP, M H (2003) Bacterial diversity in worker adults of Apis mellifera capensis and Apis mellifera scutellata (Insecta: Hymenoptera) assessed using 16S rRNA sequences. Journal of Invertebrate Pathology 84(2):96-103. http://dx.doi.org/10.1016/j.jip. 2003.08.007
-
(2003)
Journal of Invertebrate Pathology
, vol.84
, Issue.2
, pp. 96-103
-
-
Jeyaprakash, A.1
Hoy, M.A.2
Allsopp, M.H.3
-
55
-
-
84868094960
-
Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance
-
KEMBEL, S W; WU, M; EISEN, J A; GREEN, J L (2012) Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. PLoS Computational Biology 8(10):e1002743. http://dx.doi.org/10.1371/jounnal. pcbi.1002743
-
(2012)
PLoS Computational Biology
, vol.8
, Issue.10
-
-
Kembel, S.W.1
Wu, M.2
Eisen, J.A.3
Green, J.L.4
-
56
-
-
79958240247
-
Bifidobacterium actinocoloniiforme sp. Nov. And Bifidobacterium Bohemicum Sp. Nov
-
KILLER, J; KOPECNÝ, J; MRÁZEK, J; KOPPOVÁ, I; HAVLÍK, J; BENADA, O; KOTT, T (2011) Bifidobacterium actinocoloniiforme sp. nov. and Bifidobacterium bohemicum sp. nov., from the bumble bee digestive tract. International Journal of Systematic and Evolutionary Microbiology 61(6):1315-1321. http://dx.doi.org/10.1099/ijs.0.022525-0
-
(2011)
Bumble Bee Digestive Tract. International Journal of Systematic and Evolutionary Microbiology
, vol.61
, Issue.6
, pp. 1315-1321
-
-
Killer, J.1
Kopecný, J.2
Mrázek, J.3
Koppová, I.4
Havlík, J.5
Benada, O.6
Kott, T.7
-
57
-
-
70349544153
-
Probiotic and gut lactobacilli and bifidobacteria: Molecular approaches to study diversity and activity
-
KLEEREBEZEM, M; VAUGHAN, E E (2009) Probiotic and gut lactobacilli and bifidobacteria: molecular approaches to study diversity and activity. Annual Review of Microbiology 63:269-290. http://dx.doi.org/10.1146/annurev. micro.091208.073341
-
(2009)
Annual Review of Microbiology
, vol.63
, pp. 269-290
-
-
Kleerebezem, M.1
Vaughan, E.E.2
-
58
-
-
84875368053
-
Diversity and evolutionary patterns of bacterial gut associates of corbiculate bees
-
KOCH, H; ABROL, D P; LI, J; SCHMID-HEMPEL, P (2013) Diversity and evolutionary patterns of bacterial gut associates of corbiculate bees. Molecular Ecology 22(7):2028-2044. http://dx.doi.org/10.1111/mec.12209
-
(2013)
Molecular Ecology
, vol.22
, Issue.7
, pp. 2028-2044
-
-
Koch, H.1
Abrol, D.P.2
Li, J.3
Schmid-Hempel, P.4
-
59
-
-
84868214714
-
Ecological effects on gut bacterial communities in wild bumble bee colonies
-
KOCH, H; CISAROVSKY, G; SCHMID-HEMPEL, P (2012) Ecological effects on gut bacterial communities in wild bumble bee colonies. Journal of Animal Ecology 81(6):1202-1210. http://dx.doi.org/10.1111/j.1365-2656.2012.02004.x
-
(2012)
Journal of Animal Ecology
, vol.81
, Issue.6
, pp. 1202-1210
-
-
Koch, H.1
Cisarovsky, G.2
Schmid-Hempel, P.3
-
60
-
-
79960597239
-
Bacterial communities in central European bumble bees: Low diversity and high specificity
-
KOCH, H; SCHMID-HEMPEL, P (2011) Bacterial communities in central European bumble bees: low diversity and high specificity. Molecular Ecology 62(1):121-133. http://dx.doi.org/10.1007/s00248-011-9854-3
-
(2011)
Molecular Ecology
, vol.62
, Issue.1
, pp. 121-133
-
-
Koch, H.1
Schmid-Hempel, P.2
-
61
-
-
84931749015
-
Gut microbiota instead of host genotype drive the specificity in the interaction of a natural hostparasite system
-
KOCH, H; SCHMID-HEMPEL, P (2012) Gut microbiota instead of host genotype drive the specificity in the interaction of a natural hostparasite system. Ecology Letters 15(10):1095-1103. http://dx.doi.org/10.1111/j.1461-0248.2012. 01831.x
-
(2012)
Ecology Letters
, vol.15
, Issue.10
, pp. 1095-1103
-
-
Koch, H.1
Schmid-Hempel, P.2
-
62
-
-
68349096330
-
Quenching autofluorescence of insect tissues for in situ detection of endosymbionts
-
KOGA, R; TSUCHIDA, T; FUKATSU, T (2009) Quenching autofluorescence of insect tissues for in situ detection of endosymbionts. Applied Entomology and Zoology 44(2):281-291. http://dx.doi.org/10.1303/aez.2009.281
-
(2009)
Applied Entomology and Zoology
, vol.44
, Issue.2
, pp. 281-291
-
-
Koga, R.1
Tsuchida, T.2
Fukatsu, T.3
-
63
-
-
84857596874
-
Using QIIME to analyse 16S rRNA gene sequences from microbial communities
-
KUCZYNSKI, J; STOMBAUGH, J; WALTERS, W A; GONZÁLEZ, A; CAPORASO, J G; KNIGHT, R (2011) Using QIIME to analyse 16S rRNA gene sequences from microbial communities. Current Protocols in Bioinformatics Unit 10. 7:1-20. http://dx.doi.org/10.1002/0471250953.bi1007s36
-
(2011)
Current Protocols in Bioinformatics Unit
, vol.10
, Issue.7
, pp. 1-20
-
-
Kuczynski, J.1
Stombaugh, J.2
Walters, W.A.3
González, A.4
Caporaso, J.G.5
Knight, R.6
-
64
-
-
77955094123
-
PyroTagger: A fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data
-
KUNIN, V; HUGENHOLTZ, P (2010) PyroTagger: A fast, accurate pipeline for analysis of rRNA amplicon pyrosequence data. The Open Journal 1:1-8.
-
(2010)
The Open Journal
, vol.1
, pp. 1-8
-
-
Kunin, V.1
Hugenholtz, P.2
-
65
-
-
84878887226
-
Cultivation and characterization of the gut symbionts of honey bees and bumble bees: Snodgrassella alvi gen. nov., sp. nov., a member of the Neisseriaceae family of the Betaproteobacteria; and Gilliamella apicola gen. nov., sp. nov., a member of Orbaceae fam. nov., Orbales ord. nov., a sister taxon to the Enterobacteriales order of the Gammaproteobacteria
-
KWONG, W K; MORAN, N A (2013) Cultivation and characterization of the gut symbionts of honey bees and bumble bees: Snodgrassella alvi gen. nov., sp. nov., a member of the Neisseriaceae family of the Betaproteobacteria; and Gilliamella apicola gen. nov., sp. nov., a member of Orbaceae fam. nov., Orbales ord. nov., a sister taxon to the Enterobacteriales order of the Gammaproteobacteria. International Journal of Systematic and Evolutionary Microbiology 62:2008-2018. http://dx.doi.org/10.1099/ijs.0.044875-0
-
(2013)
International Journal of Systematic and Evolutionary Microbiology
, vol.62
, pp. 2008-2018
-
-
Kwong, W.K.1
Moran, N.A.2
-
66
-
-
84868682035
-
The prevalence of parasites and pathogens in Asian honey bees Apis cerana in China
-
LI, J; QIN, H; WU, J; SADD, B M; WANG, X; EVANS, J D; PENG, W; CHEN, Y (2012) The prevalence of parasites and pathogens in Asian honey bees Apis cerana in China. PloS one 7(11):e47955. http://dx.doi.org/10.1371/journal.pone.0047955
-
(2012)
PloS One
, vol.7
, Issue.11
-
-
Li, J.1
Qin, H.2
Wu, J.3
Sadd, B.M.4
Wang, X.5
Evans, J.D.6
Peng, W.7
Chen, Y.8
-
67
-
-
60749092312
-
Typing of Pantoea agglomerans isolated from colonies of honey bees (Apis mellifera) and culturability of selected strains from honey
-
LONCARIC, I; HEIGL, H; LICEK, E; MOOSBECKHOFER, R; BUSSE, H J; ROSENGARTEN, R (2009) Typing of Pantoea agglomerans isolated from colonies of honey bees (Apis mellifera) and culturability of selected strains from honey. Apidologie 40(1):40-54. http://dx.doi.org/10.1051/apido/2008062
-
(2009)
Apidologie
, vol.40
, Issue.1
, pp. 40-54
-
-
Loncaric, I.1
Heigl, H.2
Licek, E.3
Moosbeckhofer, R.4
Busse, H.J.5
Rosengarten, R.6
-
68
-
-
33846102841
-
ProbeBase-an online resource for rRNA-targeted oligonucleotide probes: New features 2007
-
LOY, A; MAIXNER, F; WAGNER, M; HORN, M (2007) probeBase-an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Research 35(suppl 1):D800-4. http://dx.doi.org/10.1093/nar/gkl856
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Loy, A.1
Maixner, F.2
Wagner, M.3
Horn, M.4
-
69
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
LOZUPONE, C; KNIGHT, R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 71(12):8228-8235. http://dx.doi.org/10.1128/AEM.71.12.8228-8235.2005
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
70
-
-
1942453481
-
-
Blackwell Publishing; Malden, Massachusetts, USA
-
MAGURRAN, A E (2004) Measuring biological diversity. Blackwell Publishing; Malden, Massachusetts, USA. 264 pp.
-
(2004)
Measuring Biological Diversity
, pp. 264
-
-
Magurran, A.E.1
-
71
-
-
85010439719
-
A procedure for the isolation of deoxyribonucleic acid from micro-organisms
-
MARMUR, J (1961) A procedure for the isolation of deoxyribonucleic acid from micro-organisms. Journal of Molecular Biology 3(2):208-218. http://dx.doi.org/10.1016/S0022-2836 (61) 80047-8
-
(1961)
Journal of Molecular Biology
, vol.3
, Issue.2
, pp. 208-218
-
-
Marmur, J.1
-
72
-
-
78751670451
-
A simple and distinctive microbiota associated with honey bees and bumble bees
-
MARTINSON, V G; DANFORTH, B N; MINCKLEY, R L; RUEPPELL, O; TINGEK, S; MORAN, N A (2011) A simple and distinctive microbiota associated with honey bees and bumble bees. Molecular Ecology 20(3):619-628. http://dx.doi.org/10.1111/j. 1365-294X.2010.04959.x
-
(2011)
Molecular Ecology
, vol.20
, Issue.3
, pp. 619-628
-
-
Martinson, V.G.1
Danforth, B.N.2
Minckley, R.L.3
Rueppell, O.4
Tingek, S.5
Moran, N.A.6
-
73
-
-
84860462269
-
Establishment of characteristic gut bacteria during development of the honey bee worker
-
MARTINSON, V G; MOY, J; MORAN, N A (2012) Establishment of characteristic gut bacteria during development of the honey bee worker. Applied and Environmental Microbiology 78(8):2830-2840. http://dx.doi.org/10.1128/AEM.07810- 11
-
(2012)
Applied and Environmental Microbiology
, vol.78
, Issue.8
, pp. 2830-2840
-
-
Martinson, V.G.1
Moy, J.2
Moran, N.A.3
-
74
-
-
84858039964
-
Characterization of the active microbiotas associated with honey bees reveals healthier and broader communities when colonies are genetically diverse
-
MATTILA, H R; RIOS, D; WALKER-SPERLING, V E; ROESELERS, G; NEWTON, I L (2012) Characterization of the active microbiotas associated with honey bees reveals healthier and broader communities when colonies are genetically diverse. PLoS One 7(3):e32962. http://dx.doi.org/10.1371/journal.pone.0032962
-
(2012)
PLoS One
, vol.7
, Issue.3
-
-
Mattila, H.R.1
Rios, D.2
Walker-Sperling, V.E.3
Roeselers, G.4
Newton, I.L.5
-
75
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of Bacteria and Archaea
-
MCDONALD, D; PRICE, M N; GOODRICH, J; NAWROCKI, E P; DESANTIS, T Z; PROBST, A; ANDERSEN, G L; KNIGHT, R; HUGENHOLTZ, P (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of Bacteria and Archaea. The ISME Journal 6(3):610-618. http://dx.doi.org/10.1038/ ismej.2011.139
-
(2012)
The ISME Journal
, vol.6
, Issue.3
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
Desantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
76
-
-
84859101601
-
Environment or kin: Whence do bees obtain acidophilic bacteria?
-
MCFREDERICK, Q S; WCISLO, W T; TAYLOR, D R; ISHAK, H D; DOWD, S E; MUELLER, U G (2012) Environment or kin: whence do bees obtain acidophilic bacteria? Molecular Ecology 21(7):1754-1768. http://dx.doi.org/10.1111/j.1365- 294X.2012.05496.x
-
(2012)
Molecular Ecology
, vol.21
, Issue.7
, pp. 1754-1768
-
-
McFrederick, Q.S.1
Wcislo, W.T.2
Taylor, D.R.3
Ishak, H.D.4
Dowd, S.E.5
Mueller, U.G.6
-
77
-
-
84874813177
-
Host specificity between Hymenoptera and Lactobacilli is the exception rather than the rule
-
MCFREDERICK, Q S; CANNONE, J J; GUTELL, R R; KELLNER, K; PLOWES, R M; MUELLER, U G (2013) Host specificity between Hymenoptera and Lactobacilli is the exception rather than the rule. Applied and Environmental Microbiology 79(6):1803-1812.
-
(2013)
Applied and Environmental Microbiology
, vol.79
, Issue.6
, pp. 1803-1812
-
-
McFrederick, Q.S.1
Cannone, J.J.2
Gutell, R.R.3
Kellner, K.4
Plowes, R.M.5
Mueller, U.G.6
-
78
-
-
33644861392
-
Diversity and phylotype consistency of bacteria in the guts of three bee species (Apoidea) at an oilseed rape field
-
MOHR, K I; TEBBE, C C (2006) Diversity and phylotype consistency of bacteria in the guts of three bee species (Apoidea) at an oilseed rape field. Environmental Microbiology 8(2):258-272. http://dx.doi.org/10.1111/j.1462-2920. 2005.00893.x
-
(2006)
Environmental Microbiology
, vol.8
, Issue.2
, pp. 258-272
-
-
Mohr, K.I.1
Tebbe, C.C.2
-
79
-
-
34248663507
-
Field study results on the probability and risk of a horizontal gene transfer from transgenic herbicideresistant oilseed rape pollen to gut bacteria of bees
-
MOHR, K I; TEBBE, C C (2007) Field study results on the probability and risk of a horizontal gene transfer from transgenic herbicideresistant oilseed rape pollen to gut bacteria of bees. Applied Microbiology and Biotechnology 75(3):573-82. http://dx.doi.org/10.1007/s00253-007-0846-7
-
(2007)
Applied Microbiology and Biotechnology
, vol.75
, Issue.3
, pp. 573-582
-
-
Mohr, K.I.1
Tebbe, C.C.2
-
80
-
-
84860486227
-
Distinctive gut microbiota of honey bees assessed using deep sampling from individual worker bees
-
MORAN, N A; HANSEN, A K; POWELL, J E; SABREE, Z L (2012) Distinctive gut microbiota of honey bees assessed using deep sampling from individual worker bees. PLoS One 7(4):e36393. http://dx.doi.org/10.1371/journal.pone.0036393
-
(2012)
PLoS One
, vol.7
, Issue.4
-
-
Moran, N.A.1
Hansen, A.K.2
Powell, J.E.3
Sabree, Z.L.4
-
81
-
-
84867684328
-
Fructophilic Lactobacillus kunkeei and Lactobacillus brevis isolated from fresh flowers, bees and bee-hives
-
NEVELING, D P; ENDO, A; DICKS, L M (2012) Fructophilic Lactobacillus kunkeei and Lactobacillus brevis isolated from fresh flowers, bees and bee-hives. Current Microbiology 65(5):507-15. http://dx.doi.org/10.1007/s00284- 012-0186-4
-
(2012)
Current Microbiology
, vol.65
, Issue.5
, pp. 507-515
-
-
Neveling, D.P.1
Endo, A.2
Dicks, L.M.3
-
82
-
-
84866563099
-
The effect of training set on the classification of honey bee gut microbiota using the Naïve Bayesian Classifier
-
NEWTON, I L; ROESELERS, G (2012) The effect of training set on the classification of honey bee gut microbiota using the Naïve Bayesian Classifier. BMC Microbiology 12:221. http://dx.doi.org/10.1186/1471-2180-12-221
-
(2012)
BMC Microbiology
, vol.12
, pp. 221
-
-
Newton, I.L.1
Roeselers, G.2
-
83
-
-
78649978358
-
Evolutionary relationships of wild hominids recapitulated by gut microbial communities
-
OCHMAN, H; WOROBEY, M; KUO, C H; NDJANGO, J B N; PEETERS, M; HAHN, B H; HUGENHOLTZ, P (2010) Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biology 8(11):e1000546. http://dx.doi.org/10. 1371/journal.pbio.1000546
-
(2010)
PLoS Biology
, vol.8
, Issue.11
-
-
Ochman, H.1
Worobey, M.2
Kuo, C.H.3
Ndjango, J.B.N.4
Peeters, M.5
Hahn, B.H.6
Hugenholtz, P.7
-
84
-
-
50249182791
-
Detection and identification of a novel lactic acid bacterial flora within the honey stomach of the honey bee Apis mellifera
-
OLOFSSON, T C; VÁSQUEZ, A (2008) Detection and identification of a novel lactic acid bacterial flora within the honey stomach of the honey bee Apis mellifera. Current Microbiology 57(4):356-363. http://dx.doi.org/10.1007/ s00284-008-9202-0
-
(2008)
Current Microbiology
, vol.57
, Issue.4
, pp. 356-363
-
-
Olofsson, T.C.1
Vásquez, A.2
-
85
-
-
0003692320
-
-
5th Ed., Johns Hopkins University Press; Baltimore, USA
-
PRESNELL, J K; SCHREIBMAN, M P; HUMASON, G L (1997) Humason's animal tissue techniques (5th Ed.). Johns Hopkins University Press; Baltimore, USA. 572 pp
-
(1997)
Humason's Animal Tissue Techniques
, pp. 572
-
-
Presnell, J.K.1
Schreibman, M.P.2
Humason, G.L.3
-
86
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
QUAST, C; PRUESSE, E; YILMAZ, P; GERKEN, J; SCHWEER, T; YARZA, P; PEPLIES, J; GLÖCKNER, F O (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research 41(D1):D590-D596. http://dx.doi.org/10.1093/nar/gks1219
-
(2013)
Nucleic Acids Research
, vol.41
, Issue.D1
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
Peplies, J.7
Glöckner, F.O.8
-
88
-
-
35348933745
-
Multivariate analyses in microbial ecology
-
RAMETTE, A (2007) Multivariate analyses in microbial ecology. FEMS Microbiology Ecology 62(2):142-160. http://dx.doi.org/10.1111/j.1574-6941.2007. 00375.x
-
(2007)
FEMS Microbiology Ecology
, vol.62
, Issue.2
, pp. 142-160
-
-
Ramette, A.1
-
89
-
-
0242523909
-
The uncultured microbial majority
-
RAPPÉ, M S; GIOVANNONI, S J (2003) The uncultured microbial majority. Annual Review of Microbiology 57:369-394. http://dx.doi.org/10.1146/ annurev. micro.57.030502.090759
-
(2003)
Annual Review of Microbiology
, vol.57
, pp. 369-394
-
-
Rappé, M.S.1
Giovannoni, S.J.2
-
90
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
ROZEN, S; SKALETSKY, H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology 132:365-386. http://dx.doi.org/10.1385/1-59259-192-2:365
-
(2000)
Methods in Molecular Biology
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
91
-
-
84864058226
-
Independent studies using deep sequencing resolve the same set of core bacterial species dominating gut communities of honey bees
-
SABREE, Z L; HANSEN, A K; MORAN, N A (2012) Independent studies using deep sequencing resolve the same set of core bacterial species dominating gut communities of honey bees. PloS One 7(7):e41250. http://dx.doi.org/10.1371/ journal.pone.0041250
-
(2012)
PloS One
, vol.7
, Issue.7
-
-
Sabree, Z.L.1
Hansen, A.K.2
Moran, N.A.3
-
92
-
-
0014636059
-
New species of bifid bacteria from Apis mellifera L and Apis indica F. A contribution to the taxonomy and biochemistry of the genus Bifidobacterium
-
SCARDOVI, V; TROVATELLI, L D (1969) New species of bifid bacteria from Apis mellifera L. and Apis indica F. A contribution to the taxonomy and biochemistry of the genus Bifidobacterium. Zentralblatt fur Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene. 123:64-88.
-
(1969)
Zentralblatt fur Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene.
, vol.123
, pp. 64-88
-
-
Scardovi, V.1
Trovatelli, L.D.2
-
93
-
-
40249113895
-
Evaluating different approaches that test whether microbial communities have the same structure
-
SCHLOSS, P D (2008) Evaluating different approaches that test whether microbial communities have the same structure. The ISME Journal 2(3):265-275. http://dx.doi.org/10.1038/ismej.2008.5
-
(2008)
The ISME Journal
, vol.2
, Issue.3
, pp. 265-275
-
-
Schloss, P.D.1
-
94
-
-
77949495216
-
A high-throughput DNA sequence aligner for microbial ecology studies
-
SCHLOSS, P D (2009) A high-throughput DNA sequence aligner for microbial ecology studies. PLoS One 4(12):e8230. http://dx.doi.org/10.1371/journal.pone. 0008230
-
(2009)
PLoS One
, vol.4
, Issue.12
-
-
Schloss, P.D.1
-
95
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
SCHLOSS, P D; GEVERS, D; WESTCOTT, S L (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6(12):e27310. http://dx.doi.org/10.1371/journal.pone.0027310
-
(2011)
PLoS One
, vol.6
, Issue.12
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
96
-
-
79958196766
-
Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis
-
SCHLOSS, P D; WESTCOTT, S L (2011) Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Applied and Environmental Microbiology 77(10):3219-3226. http://dx.doi.org/10.1128/AEM.02810-10
-
(2011)
Applied and Environmental Microbiology
, vol.77
, Issue.10
, pp. 3219-3226
-
-
Schloss, P.D.1
Westcott, S.L.2
-
97
-
-
72949107142
-
Introducing mothur: Opensource, platform-independent, community-supported software for describing and comparing microbial communities
-
SCHLOSS, P D; WESTCOTT, S L; RYABIN, T; HALL, J R; HARTMANN, M; HOLLISTER, E B; LESNIEWSKI, R A; OAKLEY, B B; PARKS, D H; ROBINSON, C J; SAHL, J W; STRES, B; THALLINGER, G G; VAN HORN, D J; WEBER, C F (2009) Introducing mothur: opensource, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 75(23):7537-7541. http://dx.doi.org/10.1128/AEM.01541-09
-
(2009)
Applied and Environmental Microbiology
, vol.75
, Issue.23
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
98
-
-
84856043672
-
A mathematical theory of communication
-
SHANNON, C E (1948) A mathematical theory of communication. The Bell System Technical Journal, 27:379-423, 623-656.
-
(1948)
The Bell System Technical Journal
, vol.27
, Issue.379-423
, pp. 623-656
-
-
Shannon, C.E.1
-
99
-
-
33344464667
-
Measurement of diversity
-
SIMPSON, E H (1949) Measurement of diversity. Nature 163:688. http://dx.doi.org/10.1038/163688a0
-
(1949)
Nature
, vol.163
, pp. 688
-
-
Simpson, E.H.1
-
100
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
SOGIN, M L; MORRISON, H G; HUBER, J A; MARK WELCH, D; HUSE, S M; NEAL, P R; ARRIETA, J M; HERNDL, G J (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere". Proceedings of the National Academy of Sciences of the United States of America 103(32):12115-12120. http://dx.doi.org/10.1073/pnas.0605127103
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.32
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Mark Welch, D.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
101
-
-
0000825481
-
A statistical method for evaluating systematic relationships
-
SOKAL, R R; MICHENER, C (1958) A statistical method for evaluating systematic relationships. The University of Kansas Science Bulletin 38(2):1409-1438.
-
(1958)
The University of Kansas Science Bulletin
, vol.38
, Issue.2
, pp. 1409-1438
-
-
Sokal, R.R.1
Michener, C.2
-
102
-
-
0021779934
-
Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
-
STALEY, J T; KONOPKA, A (1985) Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annual Review of Microbiology 39:321-346. http://dx.doi.org/10.1146/annurev. mi.39.100185.001541
-
(1985)
Annual Review of Microbiology
, vol.39
, pp. 321-346
-
-
Staley, J.T.1
Konopka, A.2
-
103
-
-
4143084055
-
New strategies for cultivation and detection of previously uncultured microbes
-
STEVENSON, B S; EICHORST, S A; WERTZ, J T; SCHMIDT, T M; BREZNAK, J A (2004) New strategies for cultivation and detection of previously uncultured microbes. Applied and Environmental Microbiology 70(4):4748-4755. http://dx.doi.org/10.1128/AEM.70.8.4748-4755.2004
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.4
, pp. 4748-4755
-
-
Stevenson, B.S.1
Eichorst, S.A.2
Wertz, J.T.3
Schmidt, T.M.4
Breznak, J.A.5
-
104
-
-
80054693082
-
Detection and identification of Lactobacillus bacteria found in the honey stomach of the giant honey bee Apis dorsata
-
TAJABADI, N; MARDAN, M; ABDUL MANAP, M Y; SHUHAIMI, M; MEIMANDIPOUR, A; NATEGHI, L (2011) Detection and identification of Lactobacillus bacteria found in the honey stomach of the giant honey bee Apis dorsata. Apidologie 42(5):642-649. http://dx.doi.org/10.1007/s13592-011-0069-x
-
(2011)
Apidologie
, vol.42
, Issue.5
, pp. 642-649
-
-
Tajabadi, N.1
Mardan, M.2
Abdul Manap, M.Y.3
Shuhaimi, M.4
Meimandipour, A.5
Nateghi, L.6
-
105
-
-
84872164313
-
Long-term exposure to antibiotics has caused accumulation of resistance determinants in the gut microbiota of honey bees
-
TIAN, B; FADHIL, N H; POWELL, J E; KWONG, W K; MORAN, N A. (2012) Long-term exposure to antibiotics has caused accumulation of resistance determinants in the gut microbiota of honey bees. mBio 3(6):e00377-12. http://dx.doi.org/10.1128/mBio.00377-12
-
(2012)
MBio
, vol.3
, Issue.6
-
-
Tian, B.1
Fadhil, N.H.2
Powell, J.E.3
Kwong, W.K.4
Moran, N.A.5
-
106
-
-
84920629237
-
A renaissance for the pioneering 16S rRNA gene
-
TRINGE, S G; HUGENHOLTZ, P (2008) A renaissance for the pioneering 16S rRNA gene. Current Opinions in Microbiology 11(5):442-446. http://dx.doi.org/10. 1016/j.mib.2008.09.011
-
(2008)
Current Opinions in Microbiology
, vol.11
, Issue.5
, pp. 442-446
-
-
Tringe, S.G.1
Hugenholtz, P.2
-
107
-
-
79952769971
-
Systems-level analysis of microbial community organization through combinatorial labelling and spectral imaging
-
VALM, A M; MARK WELCH, J L; RIEKEN, C W; HASEGAWA, Y; SOGIN, M L; OLDENBOURG, R; DEWHIRST, F E; BORISY, G G (2011) Systems-level analysis of microbial community organization through combinatorial labelling and spectral imaging. Proceedings of the National Academy of Sciences of the United States of America 108(10):4152-4157. http://dx.doi.org/10.1073/pnas.1101134108
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, Issue.10
, pp. 4152-4157
-
-
Valm, A.M.1
Mark Welch, J.L.2
Rieken, C.W.3
Hasegawa, Y.4
Sogin, M.L.5
Oldenbourg, R.6
Dewhirst, F.E.7
Borisy, G.G.8
-
108
-
-
84858050440
-
Symbionts as major modulators of insect health: Lactic acid bacteria and honey bees
-
VÁSQUEZ, A; FORSGREN, E; FRIES, I; PAXTON, R J; FLABERG, E; SZEKELY, L; OLOFSSON, T C (2012) Symbionts as major modulators of insect health: lactic acid bacteria and honey bees. PLoS One. 7(3):e33188. http://dx.doi.org/10.1371/journal.pone.0033188
-
(2012)
PLoS One.
, vol.7
, Issue.3
-
-
Vásquez, A.1
Forsgren, E.2
Fries, I.3
Paxton, R.J.4
Flaberg, E.5
Szekely, L.6
Olofsson, T.C.7
-
109
-
-
0038265129
-
Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes
-
WAGNER, M; HORN, M; DAIMS, H (2003) Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes. Current Opinion in Microbiology 6(3):302-309. http://dx.doi.org/10.1016/S1369-5274 (03) 00054-7
-
(2003)
Current Opinion in Microbiology
, vol.6
, Issue.3
, pp. 302-309
-
-
Wagner, M.1
Horn, M.2
Daims, H.3
-
110
-
-
34548293679
-
Naïve Bayesian Classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
WANG, Q; GARRITY, G M; TIEDJE, J M; COLE, J R (2007) Naïve Bayesian Classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 73(16):5261-5267. http://dx.doi.org/10.1128/AEM.00062-07
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.16
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
111
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
WARNECKE, F; LUGINBUHL, P; IVANOVA, N; GHASSEMIAN, M; RICHARDSON, T H (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450(7169):560-565.
-
(2007)
Nature
, vol.450
, Issue.7169
, pp. 560-565
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
-
112
-
-
0000594195
-
Evolution and measurement of species diversity
-
WHITTAKER, R H (1972) Evolution and measurement of species diversity. Taxon 21(2/3):213-251.
-
(1972)
Taxon
, vol.21
, Issue.2-3
, pp. 213-251
-
-
Whittaker, R.H.1
-
113
-
-
33644856670
-
Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides
-
YILMAZ, L S; ÖKTEN, H E; NOGUERA D R (2006) Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides. Applied and Environmental Microbiology 72(1):733-744. http://dx.doi.org/10.1128/ AEM/72.1.733-744.2006
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.1
, pp. 733-744
-
-
Yilmaz, L.S.1
Ökten, H.E.2
Noguera, D.R.3
|