Estimating population diversity with CatchAll

Bioinformatics

Volumn 28, Issue 7, 2012, Pages 1045-1047

  Bunge, John ^a   Woodard, Linda ^a   B̈hning, Dankmar ^b   Foster, James A ^c   Connolly, Sean ^d   Allen, Heather K ^e  

^a Department of Obstetrics Gynecology   (United States)

^b UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^c UNIVERSITY OF IDAHO   (United States)

^d CHARLES RIVER ASSOCIATES   (United States)

^e NATIONAL ANIMAL DISEASE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BACTERIOPHAGE; BIOLOGY; COMPUTER PROGRAM; GENETICS; METHODOLOGY; POPULATION GENETICS; STATISTICAL MODEL; STATISTICS;

ALGORITHMS; BACTERIOPHAGES; COMPUTATIONAL BIOLOGY; GENETICS, POPULATION; LIKELIHOOD FUNCTIONS; LINEAR MODELS; MODELS, STATISTICAL; SOFTWARE;

EID: 84859231246     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts075     Document Type: Article

References (8)

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2. Behnke, A. et al. (2011) Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions. Envrion. Microbiol., 13, 340-349.
3. Bunge, J. (2011) Estimating the number of species with CatchAll. In Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011. World Scientific Publishing, Hackensack, New Jersey, USA.
4. Bunge, J. and Barger, J. (2008) Parametric models for estimating the number of classes. Biometr. J., 50, 971-982.
5. Bunge, J. et al. (2012) Estimating population diversity with unreliable low frequency counts. In: Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 2-6 January 2012. World Scientific Publishing, Hackensack, New Jersey, USA.
6. Chao, A. and Lee, S.M. (1992) Estimating the number of classes via sample coverage. J. Am. Stat. Associ., 87, 210-217.
7. Rocchetti, I. et al. (2011) Population size estimation based upon ratios of recapture probabilities. Ann. Appl. Stat., 5, 1512-1533. doi:10.1214/10-AOAS436.
8. Sun, S. et al. (2011) Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Res., 39, D546-D551.