Soil fungal communities and enzyme activities in a sandy, highly weathered tropical soil treated with biochemically contrasting organic inputs

Biology and Fertility of Soils

Volumn 49, Issue 7, 2013, Pages 905-917

  Kamolmanit, Bhanudacha ^a,b   Vityakon, Patma ^a   Kaewpradit, Wanwipa ^a   Cadisch, Georg ^b   Rasche, Frank ^b  

^a KHON KAEN UNIVERSITY   (Thailand)

^b UNIVERSITY OF HOHENHEIM   (Germany)

Author keywords

Decomposition; Enzyme activities; Fungal abundance and community structure; Organic input quality; Soil organic matter

Indexed keywords

ABUNDANCE; BIODEGRADATION; CHEMICAL WEATHERING; DECOMPOSITION; ENZYME ACTIVITY; FUNGUS; LEAF LITTER; LEGUME; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; NUTRIENT AVAILABILITY; PLANT RESIDUE; SOIL AMENDMENT; SOIL MICROORGANISM; SOIL NITROGEN; SOIL ORGANIC MATTER; TROPICAL SOIL; TURNOVER;

ANGUILLOSPORA LONGISSIMA; ARACHIS HYPOGAEA; ASPERGILLUS FUMIGATUS; ASPERGILLUS VERSICOLOR; BACTERIA (MICROORGANISMS); CORYNASCUS HETEROTHALLICUS; FUNGI; FUSARIUM OXYSPORUM; PROTOZOA; TAMARINDUS INDICA;

EID: 84884208201     PISSN: 01782762     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00374-013-0785-7     Document Type: Article

References (74)

1. Abdullah SK, Taj-Aldeen SJ (1989) Extracellular enzymatic activity of aquatic and aero-aquatic conidial fungi. Hydrobiologia 174: 217-223.
2. Abro S, Tian X, You D, Ba Y, Li M, Wu F (2011) Influence of microbial inoculants on soil response to properties with and without straw under different temperature regimes. Afr J Microbiol Res 4: 3054-3061.
3. Aciego Pietri JC, Brookes PC (2009) Substrate inputs and pH as factors controlling microbial biomass, activity and community structure in an arable soil. Soil Biol Biochem 41: 1396-1405.
4. Alef K, Nannipieri P (1995) B-glucosidase activity. In: Alef K, Nannipieri P (eds) Methods in applied soil microbiology and biochemistry. Academic Press, London, pp 350-352.
5. Anderson IC, Campbell CD, Prosser JI (2003) Potential bias on fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ Microbiol 5: 36-47.
6. Babot ED, Rico A, Rencoret J, Kalum L, Lund H, Romero J, del Río JC, Martínez AT, Gutiérrez A (2011) Towards industrially-feasible delignification and pitch removal by treating paper pulp with Myceliopthora thermophila laccase and a phenol mediator. Bioresour Technol 102: 6717-6722.
7. Bastida F, Jindo K, Moreno JL, Hernández T, Garcia C (2012) Effects of organic amendments on soil carbon fractions, enzyme activity and humus-enzyme complexes under semi-arid conditions. Eur J Soil Biol 53: 94-102.
8. Bierke A, Kaiser K, Guggenberger G (2008) Crop residue management effects on organic matter in paddy soils-the lignin component. Geoderma 146: 48-57.
9. Bissett A, Richardson AE, Baker G, Thrall PH (2011) Long-term land use effects on soil microbial community structure and function. Appl Soil Ecol 51: 66-78.
10. Caesar-TonThat TC (2002) Soil binding properties of mucilage produced by a basidiomycete fungus in a model system. Mycol Res 106: 930-937.
11. Caesar-TonThat TC, Cochran VL (2001) Role of saprophytic basidiomycete soil fungus in aggregate stability. In: Stott DE, Mohtar RH, Steinhardt GC (eds) Sustaining the global forum, 10th International Soil Conservation Organisation Symposium on Soil Erosion Research. Pardue University, West Lafayette, pp 575-579.
12. Carreiro MM, Sinsabaugh RL, Repert DA, Parkhurst DF (2000) Microbial enzyme shifts explain litter decay responses to simulated nitrogen deposition. Ecology 81: 2359-2365.
13. Chaparro JM, Sheflin AM, Manter DK, Vivanco JM (2012) Manipulating the soil microbiome to increase soil health and plant fertility. Biol Fertil Soils 48: 489-499.
14. Chemidlin Prévost-Bouré N, Christen R, Dequiedt S, Mougel C, Lelièvre M, Jolivet C, Shahbazkia HR, Guillou L, Arrouays D, Ranjard L (2011) Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR. PLoS One 6: e24166. doi: 10. 1371/journal. pone. 0024166.
15. Chigineva NI, Aleksandrova AV, Tiunov AV (2009) The addition of labile carbon alters litter fungal communities and decreases litter decomposition rates. Appl Soil Ecol 42: 264-270.
16. Clark KR, Warwick RM (2001) Change in marine communities: an approach to statistical analysis and interpretation, 2nd edn. Primer-E, Plymouth.
17. Clarke KR, Green RH (1988) Statistical design and analysis of a biological effect study. Mar Ecol Prog Ser 46: 213-226.
18. Debosz K, Rasmussen PH, Pedersen AR (1999) Temporal variations in microbial biomass C and cellulolytic enzyme activity in arable soils: effects of organic matter input. Appl Soil Ecol 13: 209-218.
19. Dunbar J, Ticknor LO, Kuske CR (2000) Assessment of microbial diversity in four Southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl Environ Microbiol 66: 2943-2950.
20. Edwards IP, Zak DR, Kellner H, Eisenlord SD, Pregitzer KS (2011) Simulated atmospheric N deposition alters fungal community composition and suppresses ligninolytic gene expression in a northern hardwood forest. PLoS One 6(6): e20421. doi: 10. 1371/journal. pone. 0020421.
21. 15N-DNA stable isotope probing. Fungal Ecol 4: 115-119.
22. Fonseca A, Boekhout T, Fell JW (2011) Cryptococcus Vuillemin (1901). In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomy study, vol. 5. Elsevier, London, pp 1661-1737.
23. Ghahfarokhi MS, Fazal A, Lotfi A, Abyaneh MR (2004) Cellobiose dehydrogenase production by the genus Cladosporium. Iran Biomed J 8: 107-111.
24. Hadas A, Kautsky L, Goek M, Kara EE (2004) Rates of decomposition of plant residues and available nitrogen in soil, related to residue composition through simulation of carbon and nitrogen turnover. Soil Biol Biochem 36: 255-266.
25. Hagn A, Pritsch K, Ludwig W, Schloter M (2003) Theoretical and practical approaches to evaluate suitable primer sets for the analysis of soil fungal communities. Acta Biotechnol 23: 373-381.
26. Hendel B, Sinsabaugh RL, Marxsen J (2005) Lignin-degrading enzymes: phenoloxidase and peroxidase. In: Graça MAS, Bärlocher F, Gessner MO (eds) Methods to study litter decomposition: a practical guide. Springer, Dordrecht, pp 273-278.
27. Hoshino YT, Matsumoto N (2007) Changes in fungal community structure in bulk soil and spinach rhizosphere soil after chemical fumigation as revealed by 18S rDNA PCR-DGGE. Soil Sci Plant Nutr 53: 40-55.
28. Keeler BL, Hobbie SE, Kellog LE (2009) Effects of long-term nitrogen addition on microbial enzyme activity in eight forested and grassland sites: implications for litter and soil organic matter decomposition. Ecosystems 12: 1-15.
29. 2. Appl Environ Microbiol 76: 4950-4959.
30. Kuikman PJ, Jansen AG, van Veen JA, Zehnder AJB (1990) Protozoan predation and the turnover of soil organic carbon and nitrogen in the presence of plants. Biol Fertil Soils 10: 22-28.
31. 15N-nitrogen mineralization from bacteria by protozoan grazing at different soil moisture regimes. Soil Biol Biochem 23: 193-200.
32. Kuzyakov Y, Bol R (2006) Sources and mechanisms of priming effect induced in two grassland soils amended with slurry and sugar. Soil Biol Biochem 38: 747-758.
33. Lagomarsino A, Grego S, Kandeler E (2012) Soil organic carbon distribution drives microbial activity and functional diversity in particle and aggregate-size fractions. Pedobiologia 55: 101-110.
34. Legendre P, Legendre L (1998) Numerical ecology, 2nd English edn. Elsevier, Amsterdam.
35. Liao JD, Boutton TW, Jastrow JD (2006) Storage and dynamics of carbon and nitrogen in soil physical fractions following woody plant invasion of grassland. Soil Biol Biochem 38: 3184-3196.
36. Lucas RW, Casper BB, Jackson JK, Balser TC (2007) Soil microbial communities and extracellular enzyme activity in the New Jersey Pinelands. Soil Biol Biochem 39: 2508-2519.
37. Luxhøi J, Magid J, Tscherko D, Kandaler E (2002) Dynamics of invertase, xylanase and coupled quality indices of decomposing green and brown plant residues. Soil Biol Biochem 34: 501-508.
38. Moscatelli MC, Lagomarsino A, Garzillo AMV, Pignataro A, Grego S (2012) β-glucosidase kinetic parameters as indicators of soil quality under conventional and organic cropping systems applying two analytical approaches. Ecol Indic 13: 322-327.
39. Murase J, Shibata M, Lee CG, Watanabe T, Asakawa S, Kimura M (2012) Incorporation of plant residue-derived carbon into the microeukaryotic community in a rice field soil revealed by DNA stable-isotope probing. FEMS Microbiol Ecol 79: 371-379.
40. Mutabaruka R, Hairiah K, Cadisch G (2007) Microbial degradation of hydrolysable and condensed tannin polyphenol-protein complexes in soils from different land-use histories. Soil Biol Biochem 39: 1479-1492.
41. Nannipieri P, Ascher J, Ceccherini MT, Landi L, Pietramellara G, Renella G (2003) Microbial diversity and soil functions. Eur J Soil Sci 54: 655-670.
42. Nannipieri P, Giagnoni L, Renella G, Puglisi E, Ceccanti B, Masciandaro G, Fornasier F, Moscatelli MC, Marinari S (2012) Soil enzymology: classical and molecular approaches. Biol Fertil Soils 48: 743-762.
43. Nicolardot B, Bouziri L, Bastian F, Ranjard L (2007) A microcosm experiment to evaluate the influence of location and quality of plant residues on residue decomposition and genetic structure of soil microbial communities. Soil Biol Biochem 39: 1631-1644.
44. Palm CA, Gachengo CN, Delve RJ, Cadisch G, Giller KE (2001) Organic inputs for soil fertility management in tropical agroecosystems: application of an organic resource base. Agric Ecosyst Environ 83: 27-42.
45. Puttaso A, Vityakon P, Saenjan P, Trelo-ges V, Cadisch G (2011a) Relationship between residue quality, decomposition patterns, and soil organic matter accumulation in a tropical sandy soil after 13 years. Nutr Cycl Agroecosyst 89: 159-174.
46. Puttaso A, Vityakon P, Trelo-ges V, Saenjan P, Cadisch G (2011b) Effect of long-term (13 years) application of different quality plant residues on soil organic carbon and soil properties of a sandy soil of Northeast Thailand. KKU Res J 16: 359-370.
47. Qin S, Hu C, He X, Dong W, Cui J, Wang Y (2010) Soil organic carbon, nutrients and relevant enzyme activities in particle-size fractions under conservational versus traditional agricultural management. Appl Soil Ecol 45: 152-159.
48. Rasche F, Cadisch G (2013) The molecular microbial perspective of organic matter turnover and nutrient cycling in tropical agroecosystems-what do we know? Biol Fertil Soils. doi: 10. 1007/s00374-013-0775-9.
49. Roldán A, Salinas-García JR, Alguacil MM, Díaz E, Caravaca F (2005) Soil enzyme activities suggest advantages of conservation tillage practices in sorghum cultivation under subtropical conditions. Geoderma 129: 178-185.
50. Rousk J, Brookes PC, Bååth E (2010) Investigating the mechanisms for the opposing pH relationships of fungal and bacterial growth in soil. Soil Biol Biochem 42: 926-934.
51. Roy SK, Raha SK, Dey SK, Chakrabarty SL (1989) Immobilization of β-glucosidase from Myceliopthora thermophila D-14. Enzym Microb Technol 11: 431-435.
52. Řzáčová V, Baldrian P, Hrselova H, Larsen J, Gryndler M (2007) Influence of mineral and organic fertilization on soil fungi, enzyme activities and humic substances in a long-term field experiment. Folia Microbiol 52: 415-421.
53. Saiya-Cork KR, Sinsabaugh RL, Zak DR (2002) The effects of long term nitrogen deposition on extracellular enzyme activity in an Acer Saccharum forest soil. Soil Biol Biochem 34: 1309-1315.
54. Sajjad MH, Lodhi A, Azam F (2002) Changes in enzyme activity during the decomposition of plant residues in soil. Pak J Biol Sci 5: 952-955.
55. Samahadthai P, Vityakon P, Saenjan P (2010) Effects of different quality plant residues on soil carbon accumulation and aggregation formation in a tropical sandy soil in Northeast Thailand as revealed by a 10-year field experiment. Land Degrad Dev 21: 463-473.
56. Sampredo I, D'Annibale A, Ocampo JA, Stazi SR, García-Romera I (2007) Solid-state cultures of Fusarium oxysporum transform aromatic components of olive-mill dry residue and reduce its phytotoxicity. Bioresour Technol 98: 3547-3554.
57. Schinner F, von Mersi W (1990) Xylanase-, CM-cellulase-, and invertase activity in soil: an improved method. Soil Biol Biochem 22: 511-515.
58. Schutter ME, Dick RP (2001) Shifts in substrate utilization potential and structure of soil microbial communities in response to carbon substrates. Soil Biol Biochem 33: 1481-1491.
59. Sinsabaugh RL, Gallo ME, Lauber C, Waldrop M, Zak DR (2005) Extracellular enzyme activities and soil carbon dynamics for northern hardwood forests receiving simulated nitrogen deposition. Biogeochemistry 75: 201-215.
60. Six J, Feller C, Denef K, Ogle SM, de Moraes Sa JC, Albrecht A (2002) Soil organic matter, biota and aggregation in temperate and tropical soils-effects of no-tillage. Agronomie 22: 755-775.
61. Sjöberg G, Nilsson SI, Persson T, Karlsson P (2004) Degradation of hemicellulose, cellulose and lignin in decomposing spruce needle litter in relation to N. Soil Biol Biochem 36: 1761-1768.
62. Soil Survey Staff (2006) Key to soil taxonomy, 10th edn. USDA Natural Resources Conservation Service, Washington.
63. Stemmer M, Gerzabek MH, Kandeler E (1999) Invertase and xylanase activity of bulk soil and particles-size fractions during maize straw decomposition. Soil Biol Biochem 31: 9-18.
64. Swift MJ, Heal OW, Anderson JM (1979) Influence of the physico-chemical environment on decomposition process. In: Anderson DJ, Greig-Smith P, Pitelka FA (eds) Decomposition in terrestrial ecosystems. Studio in ecology, vol. 5. University of California Press, Berkeley, pp 220-266.
65. Vanio EJ, Hantula J (2000) Direct analysis of wood-inhibiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA. Mycol Res 104: 927-936.
66. Verchot LV, Dutaur L, Shepherd KD, Albrecht A (2011) Organic matter stabilization in soil aggregates: understanding the biogeochemical mechanisms that determine the fate of carbon inputs in soils. Geoderma 161: 182-193.
67. Vityakon P (2007) Degradation and restoration of sandy soils under different agricultural land uses in northeast Thailand: a review. Land Degrad Dev 18: 567-577.
68. Vityakon P, Dangthaisong N (2005) Environmental influences on nitrogen transformation of different quality tree litter under submerged and aerobic conditions. Agrofor Syst 63: 225-236.
69. Vityakon P, Meepech S, Cadisch G, Toomsan B (2000) Soil organic matter and nitrogen transformation mediated by plant residues of different qualities in sandy acid upland and paddy soils. Neth J Agric Sci 48: 75-90.
70. Wardle DA, Giller KE (1996) The quest for a contemporary ecological dimension to soil biology. Soil Biol Biochem 28: 1549-1554.
71. Wardle DA, Yeates GW, Nicholson KS, Bonner KI, Watson RN (1999) Response of soil microbial biomass dynamics, activity and plant litter decomposition to agricultural intensification over a seven-year period. Soil Biol Biochem 31: 1707-1720.
72. Wu L, Feinstein LM, Valverde-Barrantes O, Kershner MW, Leff LG, Blackwood CB (2011) Placing the effects of leaf litter diversity on saprophytic microorganisms in the context of leaf type and habitat. Microb Ecol 61: 399-409.
73. Yuste JC, Penuelas J, Estiarte M, Garcia-Mas J, Mattana S, Ogaya R, Pujol M, Sardans J (2011) Drought-resistant fungi control soil organic matter decomposition and its response to temperature. Glob Chang Biol 17: 1475-1486.
74. Zhao Y, Li W, Zhou Z, Wang L, Pan Y, Zhao L (2005) Dynamics of microbial community structure and cellulolytic activity in agricultural soil amended with two biofertilizers. Eur J Soil Biol 41: 21-29.