-
1
-
-
0031890206
-
Immunologic and therapeutic evaluation of a synthetic peptide vaccine for the treatment of patients with metastatic melanoma
-
Rosenberg SA, Yang JC, Schwartzentruber DJ, Hwu P, Marincola FM, Topalian SL, Restifo NP, Dudley ME, Schwarz SL, Spiess PJ, et al: Immunologic and therapeutic evaluation of a synthetic peptide vaccine for the treatment of patients with metastatic melanoma. Nat Med 1998, 4(3):321-327.
-
(1998)
Nat Med
, vol.4
, Issue.3
, pp. 321-327
-
-
Rosenberg, S.A.1
Yang, J.C.2
Schwartzentruber, D.J.3
Hwu, P.4
Marincola, F.M.5
Topalian, S.L.6
Restifo, N.P.7
Dudley, M.E.8
Schwarz, S.L.9
Spiess, P.J.10
-
2
-
-
0033839990
-
Oral feeding of an immunodominant MHC donor-derived synthetic class I peptide prolongs graft survival of heterotopic cardiac allografts in a high-responder rat strain combination
-
Zavazava N, Fandrich F, Zhu X, Freese A, Behrens D, Yoo-Ott KA: Oral feeding of an immunodominant MHC donor-derived synthetic class I peptide prolongs graft survival of heterotopic cardiac allografts in a high-responder rat strain combination. J Leukoc Biol 2000, 67(6):793-800.
-
(2000)
J Leukoc Biol
, vol.67
, Issue.6
, pp. 793-800
-
-
Zavazava, N.1
Fandrich, F.2
Zhu, X.3
Freese, A.4
Behrens, D.5
Yoo-Ott, K.A.6
-
3
-
-
0030805065
-
Synthetic MHC class I peptide prolongs cardiac survival and attenuates transplant arteriosclerosis in the Lewis->Fischer 344 model of chronic allograft rejection
-
Murphy B, Kim KS, Buelow R, Sayegh MH, Hancock WW: Synthetic MHC class I peptide prolongs cardiac survival and attenuates transplant arteriosclerosis in the Lewis->Fischer 344 model of chronic allograft rejection. Transplantation 1997, 64(1):14-19.
-
(1997)
Transplantation
, vol.64
, Issue.1
, pp. 14-19
-
-
Murphy, B.1
Kim, K.S.2
Buelow, R.3
Sayegh, M.H.4
Hancock, W.W.5
-
4
-
-
0033301937
-
MHC class I molecules, structure and function
-
Natarajan K, Li H, Mariuzza RA, Margulies DH: MHC class I molecules, structure and function. Rev Immunogenet 1999, 1(1):32-46.
-
(1999)
Rev Immunogenet
, vol.1
, Issue.1
, pp. 32-46
-
-
Natarajan, K.1
Li, H.2
Mariuzza, R.A.3
Margulies, D.H.4
-
5
-
-
0026618817
-
Different length peptides bind to HLA-Aw68 similarly at their ends but bulge out in the middle
-
Guo HC, Jardetzky TS, Garrett TP, Lane WS, Strominger JL, Wiley DC: Different length peptides bind to HLA-Aw68 similarly at their ends but bulge out in the middle. Nature 1992, 360(6402):364-366.
-
(1992)
Nature
, vol.360
, Issue.6402
, pp. 364-366
-
-
Guo, H.C.1
Jardetzky, T.S.2
Garrett, T.P.3
Lane, W.S.4
Strominger, J.L.5
Wiley, D.C.6
-
6
-
-
0035126190
-
Two different, highly exposed, bulged structures for an unusually long peptide bound to rat MHC class I RT1-Aa
-
Speir JA, Stevens J, Joly E, Butcher GW, Wilson IA: Two different, highly exposed, bulged structures for an unusually long peptide bound to rat MHC class I RT1-Aa. Immunity 2001, 14(1):81-92.
-
(2001)
Immunity
, vol.14
, Issue.1
, pp. 81-92
-
-
Speir, J.A.1
Stevens, J.2
Joly, E.3
Butcher, G.W.4
Wilson, I.A.5
-
7
-
-
0025825696
-
Peptide selection by MHC class I molecules
-
Schumacher TN, De Bruijn ML, Vernie LN, Kast WM, Melief CJ, Neefjes JJ, Ploegh HL: Peptide selection by MHC class I molecules. Nature 1991, 350(6320):703-706.
-
(1991)
Nature
, vol.350
, Issue.6320
, pp. 703-706
-
-
Schumacher, T.N.1
De Bruijn, M.L.2
Vernie, L.N.3
Kast, W.M.4
Melief, C.J.5
Neefjes, J.J.6
Ploegh, H.L.7
-
8
-
-
0033301287
-
Structural principles of MHC class II antigen presentation
-
Nelson CA, Fremont DH: Structural principles of MHC class II antigen presentation. Rev Immunogenet 1999, 1(1):47-59.
-
(1999)
Rev Immunogenet
, vol.1
, Issue.1
, pp. 47-59
-
-
Nelson, C.A.1
Fremont, D.H.2
-
9
-
-
0036467453
-
C-terminal anchoring of a peptide to class II MHC via the P10 residue is compatible with a peptide bulge
-
Yassai M, Afsari A, Garlie J, Gorski J: C-terminal anchoring of a peptide to class II MHC via the P10 residue is compatible with a peptide bulge. J Immunol 2002, 168(3):1281-1285.
-
(2002)
J Immunol
, vol.168
, Issue.3
, pp. 1281-1285
-
-
Yassai, M.1
Afsari, A.2
Garlie, J.3
Gorski, J.4
-
11
-
-
0035338992
-
Naturally processed HLA class II peptides reveal highly conserved immunogenic flanking region sequence preferences that reflect antigen processing rather than peptide-MHC interactions
-
Godkin AJ, Smith KJ, Willis A, Tejada-Simon MV, Zhang J, Elliott T, Hill AV: Naturally processed HLA class II peptides reveal highly conserved immunogenic flanking region sequence preferences that reflect antigen processing rather than peptide-MHC interactions. J Immunol 2001, 166(11):6720-6727.
-
(2001)
J Immunol
, vol.166
, Issue.11
, pp. 6720-6727
-
-
Godkin, A.J.1
Smith, K.J.2
Willis, A.3
Tejada-Simon, M.V.4
Zhang, J.5
Elliott, T.6
Hill, A.V.7
-
12
-
-
33645290018
-
MHC class II proteins and disease: a structural perspective
-
Jones EY, Fugger L, Strominger JL, Siebold C: MHC class II proteins and disease: a structural perspective. Nat Rev Immunol 2006, 6(4):271-282.
-
(2006)
Nat Rev Immunol
, vol.6
, Issue.4
, pp. 271-282
-
-
Jones, E.Y.1
Fugger, L.2
Strominger, J.L.3
Siebold, C.4
-
13
-
-
7944223046
-
Computational methods for prediction of T-cell epitopes-a framework for modelling, testing, and applications
-
Brusic V, Bajic VB, Petrovsky N: Computational methods for prediction of T-cell epitopes-a framework for modelling, testing, and applications. Methods 2004, 34(4):436-443.
-
(2004)
Methods
, vol.34
, Issue.4
, pp. 436-443
-
-
Brusic, V.1
Bajic, V.B.2
Petrovsky, N.3
-
17
-
-
34250196006
-
Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools
-
Trost B, Bickis M, Kusalik A: Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools. Immunome Res 2007, 3:5.
-
(2007)
Immunome Res
, vol.3
, pp. 5
-
-
Trost, B.1
Bickis, M.2
Kusalik, A.3
-
18
-
-
77953520516
-
MHC class II epitope predictive algorithms
-
Nielsen M, Lund O, Buus S, Lundegaard C: MHC class II epitope predictive algorithms. Immunology 2010, 130(3):319-328.
-
(2010)
Immunology
, vol.130
, Issue.3
, pp. 319-328
-
-
Nielsen, M.1
Lund, O.2
Buus, S.3
Lundegaard, C.4
-
19
-
-
42949139524
-
A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
-
Wang P, Sidney J, Dow C, Mothe B, Sette A, Peters B: A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach. PLoS Comput Biol 2008, 4(4):e1000048.
-
(2008)
PLoS Comput Biol
, vol.4
, Issue.4
-
-
Wang, P.1
Sidney, J.2
Dow, C.3
Mothe, B.4
Sette, A.5
Peters, B.6
-
20
-
-
0026728457
-
Emerging principles for the recognition of peptide antigens by MHC class I molecules
-
Matsumura M, Fremont DH, Peterson PA, Wilson IA: Emerging principles for the recognition of peptide antigens by MHC class I molecules. Science 1992, 257(5072):927-934.
-
(1992)
Science
, vol.257
, Issue.5072
, pp. 927-934
-
-
Matsumura, M.1
Fremont, D.H.2
Peterson, P.A.3
Wilson, I.A.4
-
21
-
-
20944447214
-
The immune epitope database and analysis resource: from vision to blueprint
-
Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, Lund O, et al: The immune epitope database and analysis resource: from vision to blueprint. PLoS Biol 2005, 3(3):e91.
-
(2005)
PLoS Biol
, vol.3
, Issue.3
-
-
Peters, B.1
Sidney, J.2
Bourne, P.3
Bui, H.H.4
Buus, S.5
Doh, G.6
Fleri, W.7
Kronenberg, M.8
Kubo, R.9
Lund, O.10
-
22
-
-
33745584371
-
A community resource benchmarking predictions of peptide binding to MHC-I molecules
-
Peters B, Bui HH, Frankild S, Nielson M, Lundegaard C, Kostem E, Basch D, Lamberth K, Harndahl M, Fleri W, et al: A community resource benchmarking predictions of peptide binding to MHC-I molecules. PLoS Comput Biol 2006, 2(6):e65.
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.6
-
-
Peters, B.1
Bui, H.H.2
Frankild, S.3
Nielson, M.4
Lundegaard, C.5
Kostem, E.6
Basch, D.7
Lamberth, K.8
Harndahl, M.9
Fleri, W.10
-
23
-
-
78549266517
-
Peptide binding predictions for HLA DR, DP and DQ molecules
-
Wang P, Sidney J, Kim Y, Sette A, Lund O, Nielsen M, Peters B: Peptide binding predictions for HLA DR, DP and DQ molecules. BMC Bioinformatics 2010, 11:568.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 568
-
-
Wang, P.1
Sidney, J.2
Kim, Y.3
Sette, A.4
Lund, O.5
Nielsen, M.6
Peters, B.7
-
27
-
-
0002140903
-
A bibliography of temporal, spatial and spatiotemporal data mining research
-
Roddick JF, Spiliopoulou M: A bibliography of temporal, spatial and spatiotemporal data mining research. SIGKDD Explor Newsl 1999, 1(1):34-38.
-
(1999)
SIGKDD Explor Newsl
, vol.1
, Issue.1
, pp. 34-38
-
-
Roddick, J.F.1
Spiliopoulou, M.2
-
29
-
-
33744538137
-
Structural definition of the H-2Kd peptidebinding motif
-
Mitaksov V, Fremont DH: Structural definition of the H-2Kd peptidebinding motif. J Biol Chem 2006, 281(15):10618-10625.
-
(2006)
J Biol Chem
, vol.281
, Issue.15
, pp. 10618-10625
-
-
Mitaksov, V.1
Fremont, D.H.2
-
30
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
Nielsen M, Lundegaard C, Worning P, Lauemoller SL, Lamberth K, Buus S, Brunak S, Lund O: Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci 2003, 12(5):1007-1017.
-
(2003)
Protein Sci
, vol.12
, Issue.5
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Lauemoller, S.L.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
31
-
-
34547778364
-
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method
-
Nielsen M, Lundegaard C, Lund O: Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method. BMC Bioinformatics 2007, 8:238.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 238
-
-
Nielsen, M.1
Lundegaard, C.2
Lund, O.3
-
32
-
-
21344466799
-
Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications
-
Bui HH, Sidney J, Peters B, Sathiamurthy M, Sinichi A, Purton KA, Mothe BR, Chisari FV, Watkins DI, Sette A: Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications. Immunogenetics 2005, 57(5):304-314.
-
(2005)
Immunogenetics
, vol.57
, Issue.5
, pp. 304-314
-
-
Bui, H.H.1
Sidney, J.2
Peters, B.3
Sathiamurthy, M.4
Sinichi, A.5
Purton, K.A.6
Mothe, B.R.7
Chisari, F.V.8
Watkins, D.I.9
Sette, A.10
-
34
-
-
0033594995
-
Conformational variants of class II MHC/peptide complexes induced by N- and Cterminal extensions of minimal peptide epitopes
-
Rotzschke O, Falk K, Mack J, Lau JM, Jung G, Strominger JL: Conformational variants of class II MHC/peptide complexes induced by N- and Cterminal extensions of minimal peptide epitopes. Proc Natl Acad Sci USA 1999, 96(13):7445-7450.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.13
, pp. 7445-7450
-
-
Rotzschke, O.1
Falk, K.2
Mack, J.3
Lau, J.M.4
Jung, G.5
Strominger, J.L.6
-
35
-
-
44349146151
-
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
-
Lundegaard C, Lund O, Nielsen M: Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers. Bioinformatics 2008, 24(11):1397-1398.
-
(2008)
Bioinformatics
, vol.24
, Issue.11
, pp. 1397-1398
-
-
Lundegaard, C.1
Lund, O.2
Nielsen, M.3
-
36
-
-
0032033678
-
Crystal structures of two I-Adpeptide complexes reveal that high affinity can be achieved without large anchor residues
-
Scott CA, Peterson PA, Teyton L, Wilson IA: Crystal structures of two I-Adpeptide complexes reveal that high affinity can be achieved without large anchor residues. Immunity 1998, 8(3):319-329.
-
(1998)
Immunity
, vol.8
, Issue.3
, pp. 319-329
-
-
Scott, C.A.1
Peterson, P.A.2
Teyton, L.3
Wilson, I.A.4
-
37
-
-
0029798722
-
New ligands binding to the human leukocyte antigen class II molecule DRB1*0101 based on the activity pattern of an undecapeptide library
-
Fleckenstein B, Kalbacher H, Muller CP, Stoll D, Halder T, Jung G, Wiesmuller KH: New ligands binding to the human leukocyte antigen class II molecule DRB1*0101 based on the activity pattern of an undecapeptide library. Eur J Biochem 1996, 240(1):71-77.
-
(1996)
Eur J Biochem
, vol.240
, Issue.1
, pp. 71-77
-
-
Fleckenstein, B.1
Kalbacher, H.2
Muller, C.P.3
Stoll, D.4
Halder, T.5
Jung, G.6
Wiesmuller, K.H.7
-
38
-
-
0026517868
-
Self-peptide released from class II HLA-DR1 exhibits a hydrophobic tworesidue contact motif
-
Kropshofer H, Max H, Muller CA, Hesse F, Stevanovic S, Jung G, Kalbacher H: Self-peptide released from class II HLA-DR1 exhibits a hydrophobic tworesidue contact motif. J Exp Med 1992, 175(6):1799-1803.
-
(1992)
J Exp Med
, vol.175
, Issue.6
, pp. 1799-1803
-
-
Kropshofer, H.1
Max, H.2
Muller, C.A.3
Hesse, F.4
Stevanovic, S.5
Jung, G.6
Kalbacher, H.7
-
39
-
-
0032547858
-
Crystal structure of HLA-DR2 (DRA*0101, DRB1*1501) complexed with a peptide from human myelin basic protein
-
Smith KJ, Pyrdol J, Gauthier L, Wiley DC, Wucherpfennig KW: Crystal structure of HLA-DR2 (DRA*0101, DRB1*1501) complexed with a peptide from human myelin basic protein. J Exp Med 1998, 188(8):1511-1520.
-
(1998)
J Exp Med
, vol.188
, Issue.8
, pp. 1511-1520
-
-
Smith, K.J.1
Pyrdol, J.2
Gauthier, L.3
Wiley, D.C.4
Wucherpfennig, K.W.5
-
40
-
-
0033570373
-
Identification of three HLA-A*0201- restricted cytotoxic T cell epitopes in the cytomegalovirus protein pp65 that are conserved between eight strains of the virus
-
Solache A, Morgan CL, Dodi AI, Morte C, Scott I, Baboonian C, Zal B, Goldman J, Grundy JE, Madrigal JA: Identification of three HLA-A*0201- restricted cytotoxic T cell epitopes in the cytomegalovirus protein pp65 that are conserved between eight strains of the virus. J Immunol 1999, 163(10):5512-5518.
-
(1999)
J Immunol
, vol.163
, Issue.10
, pp. 5512-5518
-
-
Solache, A.1
Morgan, C.L.2
Dodi, A.I.3
Morte, C.4
Scott, I.5
Baboonian, C.6
Zal, B.7
Goldman, J.8
Grundy, J.E.9
Madrigal, J.A.10
|