A novel method to predict regulatory regions based on histone mark landscapes in macrophages

Immunobiology

Volumn 218, Issue 11, 2013, Pages 1416-1427

  Nagy, Gergely ^a   Dániel, Bence ^a   Jónás, Dávid ^a   Nagy, László ^a   Barta, Endre ^a  

^a UNIVERSITY OF DEBRECEN   (Hungary)

Author keywords

Enhancer; Histone modification; Macrophage; Nucleosome free region; Promoter; PU.1

Indexed keywords

CCAAT ENHANCER BINDING PROTEIN; DNA BINDING PROTEIN; HISTONE; MYOCYTE ENHANCER FACTOR 2; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP 1; TRANSCRIPTION FACTOR PU 1; TRANSCRIPTION FACTOR RUNX;

ANIMAL CELL; ARTICLE; BINDING SITE; CELL DIFFERENTIATION; CELL TYPE; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DIMERIZATION; DNA BINDING; ENRICHMENT CULTURE; GRANULOCYTE; HISTONE MODIFICATION; MACROPHAGE; MALE; MOUSE; NONHUMAN; NUCLEOSOME; NUCLEOSOME FREE REGION; PHAGOCYTOSIS; PREDICTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN INTERACTION; PROTEIN MOTIF; SEQUENCE ANALYSIS;

BASIC LEUCINE ZIPPER; BURROWS-WHEELER ALIGNMENT TOOL; BWA; BZIP; CAMP RESPONSE ELEMENT; CHIP; CHROMATIN IMMUNOPRECIPITATION; CRE; DMEM; DULBECCO'S MODIFIED EAGLE'S MEDIUM; ENCODE; ENCYCLOPEDIA OF DNA ELEMENTS; ENHANCER; FAIRE; FORMALDEHYDE-ASSISTED ISOLATION OF REGULATORY ELEMENTS; HELIX-LOOP-HELIX; HELIX-TURN-HELIX; HISTONE MODIFICATION; HLH; HOMER; HTH; HYPERGEOMETRIC OPTIMIZATION OF MOTIF ENRICHMENT; IGV; INTEGRATIVE GENOMICS VIEWER; MACROPHAGE; NFR; NOR; NUCLEOSOME OCCUPIED REGION; NUCLEOSOME-FREE REGION; PROMOTER; PU.1; SEQUENCE READ ARCHIVE; SRA; TRANSCRIPTION START SITE; TSS;

ANIMALS; BASE SEQUENCE; BINDING SITES; BONE MARROW CELLS; CELL DIFFERENTIATION; CHROMOSOME MAPPING; CORE BINDING FACTOR ALPHA SUBUNITS; DNA-BINDING PROTEINS; HISTONES; MACROPHAGES; MALE; MEF2 TRANSCRIPTION FACTORS; MICE; MICE, INBRED C57BL; MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR; NUCLEOSOMES; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTOR AP-1; TRANSCRIPTIONAL ACTIVATION;

EID: 84884153740     PISSN: 01712985     EISSN: 18783279     Source Type: Journal    
DOI: 10.1016/j.imbio.2013.07.006     Document Type: Article

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