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Volumn 12, Issue 11, 2013, Pages 3123-3134

Multi-dimensional co-separation analysis reveals protein-protein interactions defining plasma lipoprotein subspecies

Author keywords

[No Author keywords available]

Indexed keywords

LIPOPROTEIN; PHOSPHOLIPID;

EID: 84884148830     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M113.028134     Document Type: Article
Times cited : (61)

References (43)
  • 2
    • 84862542056 scopus 로고    scopus 로고
    • The antioxidant properties of high-density lipoproteins in atherosclerosis
    • Mackness, B., and Mackness, M. (2012) The antioxidant properties of high-density lipoproteins in atherosclerosis. Panminerva Med. 54, 83-90.
    • (2012) Panminerva Med. , vol.54 , pp. 83-90
    • Mackness, B.1    Mackness, M.2
  • 3
    • 84861226904 scopus 로고    scopus 로고
    • High-density lipoprotein and atherosclerosis: The role of antioxidant activity
    • Bandeali, S., and Farmer, J. (2012) High-density lipoprotein and atherosclerosis: The role of antioxidant activity. Curr. Atheroscler. Rep. 14, 101-107.
    • (2012) Curr. Atheroscler. Rep. , vol.14 , pp. 101-107
    • Bandeali, S.1    Farmer, J.2
  • 8
    • 0024232939 scopus 로고
    • Inheritance of low-density lipoprotein subclass patterns: Results of complex segregation analysis
    • Austin, M. A., King, M. C., Vranizan, K. M., Newman, B., and Krauss, R. M. (1988) Inheritance of low-density lipoprotein subclass patterns: results of complex segregation analysis. Am. J. Hum. Genet. 43, 838-846. (Pubitemid 19018985)
    • (1988) American Journal of Human Genetics , vol.43 , Issue.6 , pp. 838-846
    • Austin, M.A.1    King, M.-C.2    Vranizan, K.M.3    Newman, B.4    Krauss, R.M.5
  • 9
    • 0023807047 scopus 로고
    • Low-density lipoprotein subclass patterns and risk of myocardial infarction
    • Austin, M. A., Breslow, J. L., Hennekens, C. H., Buring, J. E., Willett, W. C., and Krauss, R. M. (1988) Low-density lipoprotein subclass patterns and risk of myocardial infarction. JAMA 260, 1917-1921.
    • (1988) JAMA , vol.260 , pp. 1917-1921
    • Austin, M.A.1    Breslow, J.L.2    Hennekens, C.H.3    Buring, J.E.4    Willett, W.C.5    Krauss, R.M.6
  • 10
    • 0141885327 scopus 로고    scopus 로고
    • Small, dense HDL particles exert potent protection of atherogenic LDL against oxidative stress
    • DOI 10.1161/01.ATV.0000091338.93223.E8
    • Kontush, A., Chantepie, S., and Chapman, M. J. (2003) Small, dense HDL particles exert potent protection of atherogenic LDL against oxidative stress. Arterioscler. Thromb. Vasc. Biol. 23, 1881-1888. (Pubitemid 37254879)
    • (2003) Arteriosclerosis, Thrombosis, and Vascular Biology , vol.23 , Issue.10 , pp. 1881-1888
    • Kontush, A.1    Chantepie, S.2    Chapman, M.J.3
  • 11
    • 77957340934 scopus 로고    scopus 로고
    • Proteomic characterization of human plasma high density lipoprotein fractionated by gel filtration chromatography
    • Gordon, S. M., Deng, J., Lu, L. J., and Davidson, W. S. (2010) Proteomic characterization of human plasma high density lipoprotein fractionated by gel filtration chromatography. J. Proteome Res. 9, 5239-5249.
    • (2010) J. Proteome Res. , vol.9 , pp. 5239-5249
    • Gordon, S.M.1    Deng, J.2    Lu, L.J.3    Davidson, W.S.4
  • 12
    • 0027161044 scopus 로고
    • Two-dimensional electrophoresis of plasma lipoproteins: Recognition of new apo A-I-containing subpopulations
    • DOI 10.1016/0005-2760(93)90253-6
    • Asztalos, B. F., Sloop, C. H., Wong, L., and Roheim, P. S. (1993) Twodimensional electrophoresis of plasma lipoproteins: recognition of new apo A-I-containing subpopulations. Biochim. Biophys. Acta 1169, 291-300. (Pubitemid 23264886)
    • (1993) Biochimica et Biophysica Acta - Lipids and Lipid Metabolism , vol.1169 , Issue.3 , pp. 291-300
    • Asztalos, B.F.1    Sloop, C.H.2    Wong, L.3    Roheim, P.S.4
  • 14
    • 66349096057 scopus 로고    scopus 로고
    • The hdl proteome: A marker-and perhaps mediator- of coronary artery disease
    • Heinecke, J. W. (2009) The HDL proteome: A marker-and perhaps mediator- of coronary artery disease. J. Lipid Res. 50 Suppl, S167-S171.
    • (2009) J. Lipid Res. , vol.50 , Issue.SUPPL.
    • Heinecke, J.W.1
  • 15
    • 84884138140 scopus 로고    scopus 로고
    • The proteomic diversity of high density lipoproteins: Our emerging understanding of its importance in lipid transport and beyond
    • Shah, A. S., Tan, L., Lu, L. J., and Davidson, W. S. (2013) The proteomic diversity of high density lipoproteins: our emerging understanding of its importance in lipid transport and beyond. J. Lipid Res. 54, 2575-2585.
    • (2013) J. Lipid Res. , vol.54 , pp. 2575-2585
    • Shah, A.S.1    Tan, L.2    Lu, L.J.3    Davidson, W.S.4
  • 16
    • 70350362707 scopus 로고    scopus 로고
    • Lipoproteomics: Using mass spectrometry-based proteomics to explore the assembly, structure, and function of lipoproteins
    • Hoofnagle, A. N., and Heinecke, J. W. (2009) Lipoproteomics: using mass spectrometry-based proteomics to explore the assembly, structure, and function of lipoproteins. J. Lipid Res. 50, 1967-1975.
    • (2009) J. Lipid Res. , vol.50 , pp. 1967-1975
    • Hoofnagle, A.N.1    Heinecke, J.W.2
  • 17
    • 25444468813 scopus 로고    scopus 로고
    • Human high density lipoproteins are platforms for the assembly of multi-component innate immune complexes
    • DOI 10.1074/jbc.M503510200
    • Shiflett, A. M., Bishop, J. R., Pahwa, A., and Hajduk, S. L. (2005) Human high density lipoproteins are platforms for the assembly of multi-component innate immune complexes. J. Biol. Chem. 280, 32578-32585. (Pubitemid 41368299)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.38 , pp. 32578-32585
    • Shiflett, A.M.1    Bishop, J.R.2    Pahwa, A.3    Hajduk, S.L.4
  • 18
    • 0037417229 scopus 로고    scopus 로고
    • High-density lipoprotein subpopulations in pathologic conditions
    • DOI 10.1016/S0002-9149(02)03383-0
    • Asztalos, B. F., and Schaefer, E. J. (2003) High-density lipoprotein subpopulations in pathologic conditions. Am. J. Cardiol. 91, 12E-17E. (Pubitemid 36385070)
    • (2003) American Journal of Cardiology , vol.91 , Issue.SUPPL. 1
    • Asztalos, B.F.1    Schaefer, E.J.2
  • 19
    • 66349083560 scopus 로고    scopus 로고
    • Proteomic analysis of defined hdl subpopulations reveals particle-specific protein clusters: Relevance to antioxidative function
    • Davidson, W. S., Silva, R. A., Chantepie, S., Lagor, W. R., Chapman, M. J., and Kontush, A. (2009) Proteomic analysis of defined HDL subpopulations reveals particle-specific protein clusters: relevance to antioxidative function. Arterioscler. Thromb. Vasc. Biol. 29, 870-876.
    • (2009) Arterioscler. Thromb. Vasc. Biol. , vol.29 , pp. 870-876
    • Davidson, W.S.1    Silva, R.A.2    Chantepie, S.3    Lagor, W.R.4    Chapman, M.J.5    Kontush, A.6
  • 20
    • 84873524007 scopus 로고    scopus 로고
    • High-density lipoprotein proteomics: Identifying new drug targets and biomarkers by understanding functionality
    • Gordon, S., Durairaj, A., Lu, J., and Davidson, W. S. (2010) High-density lipoprotein proteomics: identifying new drug targets and biomarkers by understanding functionality. Curr. Cardiovasc. Risk Rep. 4, 1-8.
    • (2010) Curr. Cardiovasc. Risk Rep. , vol.4 , pp. 1-8
    • Gordon, S.1    Durairaj, A.2    Lu, J.3    Davidson, W.S.4
  • 21
    • 79960197180 scopus 로고    scopus 로고
    • The tandem affinity purification technology: An overview
    • Li, Y. (2011) The tandem affinity purification technology: An overview. Biotechnol. Lett. 33, 1487-1499.
    • (2011) Biotechnol. Lett. , vol.33 , pp. 1487-1499
    • Li, Y.1
  • 22
    • 46549085153 scopus 로고    scopus 로고
    • A "tagless" strategy for identification of stable protein complexes genome-wide by multidimensional orthogonal chromatographic separation and itraq reagent tracking
    • Dong, M., Yang, L. L., Williams, K., Fisher, S. J., Hall, S. C., Biggin, M. D., Jin, J., and Witkowska, H. E. (2008) A "tagless" strategy for identification of stable protein complexes genome-wide by multidimensional orthogonal chromatographic separation and iTRAQ reagent tracking. J. Pro-teome Res. 7, 1836-1849.
    • (2008) J. Pro-teome Res. , vol.7 , pp. 1836-1849
    • Dong, M.1    Yang, L.L.2    Williams, K.3    Fisher, S.J.4    Hall, S.C.5    Biggin, M.D.6    Jin, J.7    Witkowska, H.E.8
  • 23
    • 0142105877 scopus 로고    scopus 로고
    • Measurement of cholesterol of major serum lipoprotein classes by anion-exchange HPLC with perchlorate ion-containing eluent
    • DOI 10.1194/jlr.D300003-JLR200
    • Hirowatari, Y., Yoshida, H., Kurosawa, H., Doumitu, K. I., and Tada, N. (2003) Measurement of cholesterol of major serum lipoprotein classes by anion-exchange HPLC with perchlorate ion-containing eluent. J. Lipid Res. 44, 1404-1412. (Pubitemid 37279623)
    • (2003) Journal of Lipid Research , vol.44 , Issue.7 , pp. 1404-1412
    • Hirowatari, Y.1    Yoshida, H.2    Kurosawa, H.3    Doumitu, K.-I.4    Tada, N.5
  • 24
    • 0018178434 scopus 로고
    • A modification of the Lowry procedure to simplify protein determination in membrane and lipoprotein samples
    • Markwell, M. A., Haas, S. M., Bieber, L. L., and Tolbert, N. E. (1978) A modification of the Lowry procedure to simplify protein determination in membrane and lipoprotein samples. Anal. Biochem. 87, 206-210. (Pubitemid 9050428)
    • (1978) Analytical Biochemistry , vol.87 , Issue.1 , pp. 206-210
    • Markwell, M.A.K.1    Haas, S.M.2    Bieber, L.L.3    Tolbert, N.E.4
  • 25
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • DOI 10.1021/ac025747h
    • Keller, A., Nesvizhskii, A. I., Kolker, E., and Aebersold, R. (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74, 5383-5392. (Pubitemid 35215372)
    • (2002) Analytical Chemistry , vol.74 , Issue.20 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 26
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • DOI 10.1021/ac0341261
    • Nesvizhskii, A. I., Keller, A., Kolker, E., and Aebersold, R. (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75, 4646-4658. (Pubitemid 37082259)
    • (2003) Analytical Chemistry , vol.75 , Issue.17 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 27
    • 84859802636 scopus 로고    scopus 로고
    • Microparticles as a circulating source of procoagulant and fibrinolytic activities in the circulation
    • Lacroix, R., and Dignat-George, F. (2012) Microparticles as a circulating source of procoagulant and fibrinolytic activities in the circulation. Thromb. Res. 129 Suppl 2, S27-S29.
    • (2012) Thromb. Res , vol.129 , Issue.SUPPL. 2
    • Lacroix, R.1    Dignat-George, F.2
  • 28
    • 0021811173 scopus 로고
    • Apolipoprotein A-I-containing lipoproteins with pre-beta electrophoretic mobility
    • Kunitake, S. T., La Sala, K. J., and Kane, J. P. (1985) Apolipoprotein A-I-containing lipoproteins with pre-beta electrophoretic mobility. J. Lipid Res. 26, 549-555. (Pubitemid 15073726)
    • (1985) Journal of Lipid Research , vol.26 , Issue.5 , pp. 549-555
    • Kunitake, S.T.1    La Sala, K.J.2    Kane, J.P.3
  • 29
    • 0014358088 scopus 로고
    • Electrophoretic separation of plasma lipoproteins in agarose gel
    • Noble, R. P. (1968) Electrophoretic separation of plasma lipoproteins in agarose gel. J. Lipid Res. 9, 693-700.
    • (1968) J. Lipid Res. , vol.9 , pp. 693-700
    • Noble, R.P.1
  • 30
    • 0346874342 scopus 로고    scopus 로고
    • Proteomic characterization of the human centrosome by protein correlation profiling
    • DOI 10.1038/nature02166
    • Andersen, J. S., Wilkinson, C. J., Mayor, T., Mortensen, P., Nigg, E. A., and Mann, M. (2003) Proteomic characterization of the human centrosome by protein correlation profiling. Nature 426, 570-574. (Pubitemid 37522644)
    • (2003) Nature , vol.426 , Issue.6966 , pp. 570-574
    • Andersen, J.S.1    Wilkinson, C.J.2    Mayor, T.3    Mortensen, P.4    Nigg, E.A.5    Mann, M.6
  • 32
    • 0020383406 scopus 로고
    • Factors affecting the integrity of high density lipoproteins in the ultracentrifuge
    • Kunitake, S. T., and Kane, J. P. (1982) Factors affecting the integrity of high density lipoproteins in the ultracentrifuge. J. Lipid Res. 23, 936-940. (Pubitemid 13244367)
    • (1982) Journal of Lipid Research , vol.23 , Issue.6 , pp. 936-940
    • Kunitake, S.T.1    Kane, J.P.2
  • 33
    • 0014817348 scopus 로고
    • Subunit structure of human fibrinogen, soluble fibrin, and cross-linked insoluble fibrin
    • McKee, P. A., Mattock, P., and Hill, R. L. (1970) Subunit structure of human fibrinogen, soluble fibrin, and cross-linked insoluble fibrin. Proc. Natl. Acad. Sci. U.S.A. 66, 738-744.
    • (1970) Proc. Natl. Acad. Sci. U.S.A. , vol.66 , pp. 738-744
    • McKee, P.A.1    Mattock, P.2    Hill, R.L.3
  • 34
    • 0017046810 scopus 로고
    • Comparative studies on monotypic IgM lambda and IgG kappa from an individual patient III. The complete amino acid sequence of the V(H) region of the IgM paraprotein
    • DOI 10.1016/0161-5890(76)90142-5
    • Capra, J. D., and Hopper, J. E. (1976) Comparative studies on monotypic IgM lambda and IgG kappa from an individual patient-III. The complete amino acid sequence of the VH region of the IgM paraprotein. Immunochemistry 13, 995-999. (Pubitemid 8009821)
    • (1976) Molecular Immunology , vol.13 , Issue.12 , pp. 995-999
    • Capra, J.D.1    Hopper, J.E.2
  • 35
    • 0026941179 scopus 로고
    • The heavy chains of human plasma inter-alpha-trypsin inhibitor: Their isolation, their identification by electrophoresis and partial sequencing, Differential reactivity with concanavalin a
    • Malki, N., Balduyck, M., Maes, P., Capon, C., Mizon, C., Han, K. K., Tartar, A., Fournet, B., and Mizon, J. (1992) The heavy chains of human plasma inter-alpha-trypsin inhibitor: Their isolation, their identification by electrophoresis and partial sequencing. Differential reactivity with concanavalin A. Biol. Chem. Hoppe Seyler 373, 1009-1018.
    • (1992) Biol. Chem. Hoppe Seyler , vol.373 , pp. 1009-1018
    • Malki, N.1    Balduyck, M.2    Maes, P.3    Capon, C.4    Mizon, C.5    Han, K.K.6    Tartar, A.7    Fournet, B.8    Mizon, J.9
  • 36
    • 0019297965 scopus 로고
    • The eighth component of human complement. Purification and physicochemical characterization of its unusual subunit structure
    • Steckel, E. W., York, R. G., Monahan, J. B., and Sodetz, J. M. (1980) The eighth component of human complement. Purification and physicochemical characterization of its unusual subunit structure. J. Biol. Chem. 255, 11997-12005. (Pubitemid 11128428)
    • (1980) Journal of Biological Chemistry , vol.255 , Issue.24 , pp. 11997-12005
    • Steckel, E.W.1    York, R.G.2    Monahan, J.B.3    Sodetz, J.M.4
  • 37
    • 0021180802 scopus 로고
    • Characterization of lipoprotein particles isolated by immunoaffinity chromatography. Particles containing A-I and A-II and particles containing A-I but not A-II
    • Cheung, M. C., and Albers, J. J. (1984) Characterization of lipoprotein particles isolated by immunoaffinity chromatography. Particles containing A-I and A-II and particles containing A-I but no A-II. J. Biol. Chem. 259, 12201-12209. (Pubitemid 14019758)
    • (1984) Journal of Biological Chemistry , vol.259 , Issue.19 , pp. 12201-12209
    • Cheung, M.C.1    Albers, J.J.2
  • 38
    • 0033003710 scopus 로고    scopus 로고
    • Characterization of a novel trypanosome lytic factor from human serum
    • Raper, J., Fung, R., Ghiso, J., Nussenzweig, V., and Tomlinson, S. (1999) Characterization of a novel trypanosome lytic factor from human serum. Infect. Immun. 67, 1910-1916. (Pubitemid 29144414)
    • (1999) Infection and Immunity , vol.67 , Issue.4 , pp. 1910-1916
    • Raper, J.1    Fung, R.2    Ghiso, J.3    Nussenzweig, V.4    Tomlinson, S.5
  • 39
    • 0032612635 scopus 로고    scopus 로고
    • Heparin-mediated extracorporeal ldl/fibrinogen precipitation-h.e.l.p.- in coronary and cerebral ischemia
    • Jaeger, B. R., Marx, P., Pfefferkorn, T., Hamann, G., and Seidel, D. (1999) Heparin-mediated extracorporeal LDL/fibrinogen precipitation-H.E.L.P.- in coronary and cerebral ischemia. Acta Neurochir. Suppl. 73, 81-84.
    • (1999) Acta Neurochir. Suppl. , vol.73 , pp. 81-84
    • Jaeger, B.R.1    Marx, P.2    Pfefferkorn, T.3    Hamann, G.4    Seidel, D.5
  • 42
    • 84859929108 scopus 로고    scopus 로고
    • Proteomics investigations of hdl: Challenges and promise
    • Vaisar, T. (2012) Proteomics investigations of HDL: challenges and promise. Curr. Vasc. Pharmacol. 10, 410-421.
    • (2012) Curr. Vasc. Pharmacol. , vol.10 , pp. 410-421
    • Vaisar, T.1
  • 43
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software Environment for integrated models of biomolecular interaction networks
    • DOI 10.1101/gr.1239303
    • Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., and Ideker, T. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504. (Pubitemid 37428274)
    • (2003) Genome Research , vol.13 , Issue.11 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9


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