ISPTM: An iterative search algorithm for systematic identification of post-translational modifications from complex proteome mixtures

Journal of Proteome Research

Volumn 12, Issue 9, 2013, Pages 3831-3842

  Huang, Xin ^a,b   Huang, Lin ^a   Peng, Hong ^a,b   Guru, Ashu ^c   Xue, Weihua ^a   Hong, Sang Yong ^a   Liu, Miao ^a   Sharma, Seema ^d   Fu, Kai ^a   Caprez, Adam P ^c   Swanson, David R ^c   Zhang, Zhixin ^a   Ding, Shi Jian ^a,b,e  

^a UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

^b UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

^c UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^d Thermo Fisher Scientific   (United States)

^e BURNHAM INSTITUTE   (United States)

Author keywords

database search; DNA damage; ISPTM; nuclear matrix; OMSSA; post translational modifications

Indexed keywords

ARGININE; ASPARTIC ACID; DOXORUBICIN; GLUTAMIC ACID; HISTIDINE; INDOLEACETIC ACID; IODOACETAMIDE; LYSINE; METHIONINE; NUCLEAR MATRIX PROTEIN; PROTEOME; SYNTHETIC PEPTIDE; UREA;

ACETYLATION; ALGORITHM; AMIDATION; AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CARBAMOYLATION; CELL NUCLEUS MATRIX; CONTROLLED STUDY; CYCLIZATION; DEAMINATION; DNA DAMAGE; ITERATIVE SEARCH FOR IDENTIFYING POSTTRANSLATIONAL MODIFICATIONS; METHYLATION; MOUSE; NONHUMAN; OXIDATION; PRE B LYMPHOCYTE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN PROCESSING; PROTEOMICS; SEARCH ENGINE; SPECTROSCOPY; TANDEM MASS SPECTROMETRY;

ALGORITHMS; AMINO ACID SEQUENCE; ANIMALS; CELL LINE; CHROMATOGRAPHY, ION EXCHANGE; MICE; MOLECULAR SEQUENCE ANNOTATION; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PEPTIDE MAPPING; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOLYSIS; PROTEOME; ROC CURVE; SEARCH ENGINE; SOFTWARE; TANDEM MASS SPECTROMETRY; TRYPSIN;

EID: 84883810215     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr4003883     Document Type: Article

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