Unrestrictive identification of post-translational modifications through peptide mass spectrometry

Nature Protocols

Volumn 1, Issue 1, 2006, Pages 67-72

  Tanner, Stephen ^a   Pevzner, Pavel A ^b   Bafna, Vineet ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE;

ARTICLE; BIOLOGY; CHEMISTRY; COMPUTER PROGRAM; MASS SPECTROMETRY; METHODOLOGY; PROTEIN DATABASE; PROTEIN PROCESSING;

COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; MASS SPECTROMETRY; PEPTIDES; PROTEIN PROCESSING, POST-TRANSLATIONAL; SOFTWARE;

EID: 33750101570     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2006.10     Document Type: Article

References (6)

1. MacCoss, M.J. et al. Shotgun identification of protein modifications from protein complexes and lens tissue. Proc. Natl. Acad. Sci. USA 99, 7900-7905 (2002).
2. Tanner, S. et al. Inspect: Fast and accurate identification of post-translationally modified peptides from tandem mass spectra. Anal. Chem. 77, 4626-4639 (2005).
3. Tsur, D., Tanner, S., Zandi, E., Bafna, V. & Pevzner, P.A. Identification of post-translational modifications by blind search of mass spectra. Nat. Biotechnol. 23, 1562-1567 (2005).
4. Pruitt, K.D., Tatusova, T. & Maglott, D.R. Ncbi reference sequence (refseq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 33, D501-D504 (2005).
5. Craig, R. & Beavis, R.C. A method for reducing the time required to match protein sequences with tandem mass spectra. Rapid Commun. Mass Spectrom. 17, 2310-2316 (2003).
6. Purvine, S., Picon, A.F. & Kolker, E. Standard mixtures for proteome studies. OMICS 8, 79-92 (2004).