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Volumn 1022, Issue , 2013, Pages 35-44

On relation between prototropy and electron delocalization for neutral and redox adenine - DFT studies

Author keywords

Adenine; DFT; Electron delocalization; HOMED G relation; Internal effects; Neutral and redox tautomeric forms

Indexed keywords


EID: 84883766955     PISSN: 2210271X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.comptc.2013.08.009     Document Type: Article
Times cited : (13)

References (50)
  • 4
    • 0035353486 scopus 로고    scopus 로고
    • Quantitative measures of aromaticity for mono-, bi-, and tricyclic penta- and hexaatomic heteroaromatic ring systems and their interrelationships
    • Katritzky A.R., Jug K., Oniciu D.C. Quantitative measures of aromaticity for mono-, bi-, and tricyclic penta- and hexaatomic heteroaromatic ring systems and their interrelationships. Chem. Rev. 2001, 101:1421-1450.
    • (2001) Chem. Rev. , vol.101 , pp. 1421-1450
    • Katritzky, A.R.1    Jug, K.2    Oniciu, D.C.3
  • 5
    • 27744467698 scopus 로고    scopus 로고
    • Tautomeric equilibria in relation to pi-electron delocalization
    • (and references therein)
    • Raczyńska E.D., Kosińska W., Ośmiałowski B., Gawinecki R. Tautomeric equilibria in relation to pi-electron delocalization. Chem. Rev. 2005, 105:3561-3612. (and references therein).
    • (2005) Chem. Rev. , vol.105 , pp. 3561-3612
    • Raczyńska, E.D.1    Kosińska, W.2    Ośmiałowski, B.3    Gawinecki, R.4
  • 8
    • 0026099456 scopus 로고
    • AM1 calculations of reaction field effects on the tautomeric equilibria of nucleic acid pyrimidine and purine bases and their 1-methyl analogs
    • Katritzky A.R., Karelson M. AM1 calculations of reaction field effects on the tautomeric equilibria of nucleic acid pyrimidine and purine bases and their 1-methyl analogs. J. Am. Chem. Soc. 1991, 113:1561-1566.
    • (1991) J. Am. Chem. Soc. , vol.113 , pp. 1561-1566
    • Katritzky, A.R.1    Karelson, M.2
  • 9
    • 0347330435 scopus 로고    scopus 로고
    • Quantum chemical study of structure, energy, rotational constants, electric dipole moments and electric field gradients of all isomeric adenines
    • Ha T.-K., Keller M.J., Gunde R., Gunthard H.H. Quantum chemical study of structure, energy, rotational constants, electric dipole moments and electric field gradients of all isomeric adenines. J. Mol. Struct. (Theochem.) 1996, 364:161-181.
    • (1996) J. Mol. Struct. (Theochem.) , vol.364 , pp. 161-181
    • Ha, T.-K.1    Keller, M.J.2    Gunde, R.3    Gunthard, H.H.4
  • 10
    • 1342323567 scopus 로고    scopus 로고
    • Calculated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment, and in aqueous solution. Part 3. Adenine
    • Hanus M., Kabeláč M., Rejnek J., Ryjáček F., Hobza P. Calculated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment, and in aqueous solution. Part 3. Adenine. J. Phys. Chem. B 2004, 108:2087-2097.
    • (2004) J. Phys. Chem. B , vol.108 , pp. 2087-2097
    • Hanus, M.1    Kabeláč, M.2    Rejnek, J.3    Ryjáček, F.4    Hobza, P.5
  • 11
    • 33645657530 scopus 로고    scopus 로고
    • Adenine tautomers: relative stabilities, ionization energies, and mismatch with cytosine
    • Guerra C.F., Bickelhaupt F.M., Saha S., Wang F. Adenine tautomers: relative stabilities, ionization energies, and mismatch with cytosine. J. Phys. Chem. A 2006, 110:4012-4020.
    • (2006) J. Phys. Chem. A , vol.110 , pp. 4012-4020
    • Guerra, C.F.1    Bickelhaupt, F.M.2    Saha, S.3    Wang, F.4
  • 12
    • 77955160481 scopus 로고    scopus 로고
    • Tautomeric forms of adenine: vertical ionization energies and Dyson orbitals
    • Singh R.K., Oritz J.V., Mishra M.K. Tautomeric forms of adenine: vertical ionization energies and Dyson orbitals. Int. J. Quantum Chem. 2010, 110:1901-1915.
    • (2010) Int. J. Quantum Chem. , vol.110 , pp. 1901-1915
    • Singh, R.K.1    Oritz, J.V.2    Mishra, M.K.3
  • 14
    • 35948959706 scopus 로고    scopus 로고
    • Photoelectron spectroscopy of adiabatically bound valence anions of rare tautomers of nucleic acid bases
    • Li X., Bowen K.H., Haranczyk M., Bachorz R.A., Mazurkiewicz K., Rak J., Gutowski M. Photoelectron spectroscopy of adiabatically bound valence anions of rare tautomers of nucleic acid bases. J. Chem. Phys. 2007, 127:174309.
    • (2007) J. Chem. Phys. , vol.127 , pp. 174309
    • Li, X.1    Bowen, K.H.2    Haranczyk, M.3    Bachorz, R.A.4    Mazurkiewicz, K.5    Rak, J.6    Gutowski, M.7
  • 15
    • 18244422457 scopus 로고    scopus 로고
    • On the aromatic character of the heterocyclic bases of DNA and RNA
    • Cyrański M.K., Gilski M., Jaskólski M., Krygowski T.M. On the aromatic character of the heterocyclic bases of DNA and RNA. J. Org. Chem. 2003, 68:8607-8613.
    • (2003) J. Org. Chem. , vol.68 , pp. 8607-8613
    • Cyrański, M.K.1    Gilski, M.2    Jaskólski, M.3    Krygowski, T.M.4
  • 16
    • 12344314391 scopus 로고    scopus 로고
    • An ab initio study on nucleic acid bases aromaticities
    • Cysewski P. An ab initio study on nucleic acid bases aromaticities. J. Mol. Struct. (Theochem.) 2005, 714:29-34.
    • (2005) J. Mol. Struct. (Theochem.) , vol.714 , pp. 29-34
    • Cysewski, P.1
  • 17
    • 33751351255 scopus 로고    scopus 로고
    • Local aromaticity in natural nucleobases and their size-expanded benzo-fused derivatives
    • Huertas O., Poater J., Fuentes-Cabrera M., Orozco M., Sola M., Luque F.J. Local aromaticity in natural nucleobases and their size-expanded benzo-fused derivatives. J. Phys. Chem A 2006, 110:12249-12258.
    • (2006) J. Phys. Chem A , vol.110 , pp. 12249-12258
    • Huertas, O.1    Poater, J.2    Fuentes-Cabrera, M.3    Orozco, M.4    Sola, M.5    Luque, F.J.6
  • 18
    • 33846582794 scopus 로고    scopus 로고
    • Natural resonance structures and aromaticity of the nucleobases
    • Sun G.Y., Nicklaus M.C. Natural resonance structures and aromaticity of the nucleobases. Theoret. Chem. Acc. 2007, 117:323-332.
    • (2007) Theoret. Chem. Acc. , vol.117 , pp. 323-332
    • Sun, G.Y.1    Nicklaus, M.C.2
  • 19
    • 72549097071 scopus 로고    scopus 로고
    • Molecular structure of 9H-adenine tautomer: gas-phase electron diffraction and quantum-chemical studies
    • Vogt N., Dorofeeva O.V., Sipachev V.A., Rykov A.N. Molecular structure of 9H-adenine tautomer: gas-phase electron diffraction and quantum-chemical studies. J. Phys. Chem. A 2009, 113:13816-13823.
    • (2009) J. Phys. Chem. A , vol.113 , pp. 13816-13823
    • Vogt, N.1    Dorofeeva, O.V.2    Sipachev, V.A.3    Rykov, A.N.4
  • 20
    • 79551490185 scopus 로고    scopus 로고
    • Chemical shift tensors in isomers of adenine: relation to aromaticity of purine rings
    • Malikova K., Novosadova L., Pipiska M., Marek R. Chemical shift tensors in isomers of adenine: relation to aromaticity of purine rings. Chem. Phys. Chem. 2011, 12:379-388.
    • (2011) Chem. Phys. Chem. , vol.12 , pp. 379-388
    • Malikova, K.1    Novosadova, L.2    Pipiska, M.3    Marek, R.4
  • 22
    • 0000189651 scopus 로고
    • Density-functional thermochemistry. III. The role of exact exchange
    • Becke A.D. Density-functional thermochemistry. III. The role of exact exchange. J. Chem. Phys. 1993, 98:5648-5652.
    • (1993) J. Chem. Phys. , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 23
    • 0345491105 scopus 로고
    • Development of the colle-salvetti correlation-energy formula into a functional of the electron density
    • Lee C., Yang W., Parr R.G. Development of the colle-salvetti correlation-energy formula into a functional of the electron density. Phys. Rev. B 1988, 37:785-789.
    • (1988) Phys. Rev. B , vol.37 , pp. 785-789
    • Lee, C.1    Yang, W.2    Parr, R.G.3
  • 25
  • 26
    • 27744530363 scopus 로고    scopus 로고
    • Nucleus-independent chemical shifts (NICS) as aromaticity criterion
    • Chen Z., Wannere C.S., Corminboeuf C., Puchta R., Schleyer P.v.R. Nucleus-independent chemical shifts (NICS) as aromaticity criterion. Chem. Rev. 2005, 105:3842-3888.
    • (2005) Chem. Rev. , vol.105 , pp. 3842-3888
    • Chen, Z.1    Wannere, C.S.2    Corminboeuf, C.3    Puchta, R.4    Schleyer, P.5
  • 27
    • 34748902875 scopus 로고    scopus 로고
    • The concept of protobranching and its many paradigm shifting implications for energy evaluations
    • Wodrich M.D., Wannere C.S., Mo Y., Jarowski P.D., Houk K.N., Schleyer P.v.R. The concept of protobranching and its many paradigm shifting implications for energy evaluations. Chem. Eur. J. 2007, 13:7731-7744.
    • (2007) Chem. Eur. J. , vol.13 , pp. 7731-7744
    • Wodrich, M.D.1    Wannere, C.S.2    Mo, Y.3    Jarowski, P.D.4    Houk, K.N.5    Schleyer, P.6
  • 29
    • 1242329156 scopus 로고    scopus 로고
    • Analysis of the ortho effects. Acidity of 2-substituted benzoic acids
    • Böhm S., Fiedler P., Exner O. Analysis of the ortho effects. Acidity of 2-substituted benzoic acids. New J. Chem. 2004, 28:67-74.
    • (2004) New J. Chem. , vol.28 , pp. 67-74
    • Böhm, S.1    Fiedler, P.2    Exner, O.3
  • 30
    • 33646722273 scopus 로고    scopus 로고
    • Acidity of ortho-substituted benzoic acids. An infrared and theoretical study of the intramolecular hydrogen bonds
    • Fiedler P., Böhm S., Kulhánek S., Exner O. Acidity of ortho-substituted benzoic acids. An infrared and theoretical study of the intramolecular hydrogen bonds. Org. Biomol. Chem. 2006, 4:2003-2011.
    • (2006) Org. Biomol. Chem. , vol.4 , pp. 2003-2011
    • Fiedler, P.1    Böhm, S.2    Kulhánek, S.3    Exner, O.4
  • 31
    • 35248826311 scopus 로고    scopus 로고
    • On geometry-based HOMED (a Measure of Hyperconjugation, n-π, and π-π Conjugation) and HOMA index (a Measure of Aromaticity), in: XVIII International Conference on Physical Organic Chemistry, Warsaw, (Book of abstracts).
    • E.D. Raczyńska, T.M. Krygowski, K. Duczmal, M. Hallmann, On geometry-based HOMED (a Measure of Hyperconjugation, n-π, and π-π Conjugation) and HOMA index (a Measure of Aromaticity), in: XVIII International Conference on Physical Organic Chemistry, Warsaw, 2006, p. 31 (Book of abstracts).
    • (2006) , pp. 31
    • Raczyńska, E.D.1    Krygowski, T.M.2    Duczmal, K.3    Hallmann, M.4
  • 32
    • 78049504454 scopus 로고    scopus 로고
    • On the harmonic oscillator model of electron delocalization (HOMED) index and its application to heteroatomic π-electron systems
    • Raczyńska E.D., Hallmann M., Kolczyńska K., Stepniewski T.M. On the harmonic oscillator model of electron delocalization (HOMED) index and its application to heteroatomic π-electron systems. Symmetry 2010, 2:1485-1509.
    • (2010) Symmetry , vol.2 , pp. 1485-1509
    • Raczyńska, E.D.1    Hallmann, M.2    Kolczyńska, K.3    Stepniewski, T.M.4
  • 33
    • 0000867708 scopus 로고
    • Definition of aromaticity basing on the harmonic oscillator model
    • Kruszewski J., Krygowski T.M. Definition of aromaticity basing on the harmonic oscillator model. Tetrahedron Lett. 1972, 3839-3842.
    • (1972) Tetrahedron Lett. , pp. 3839-3842
    • Kruszewski, J.1    Krygowski, T.M.2
  • 34
    • 84860529936 scopus 로고
    • Aromaticity of thiophene, pyrrole and furan in terms of aromaticity indices and Hammett ρ constants
    • Krygowski T.M., Kruszewski J. Aromaticity of thiophene, pyrrole and furan in terms of aromaticity indices and Hammett ρ constants. Bull. Acad. Pol. Sci., Sér. Sci. Chim. 1974, 22:871-876.
    • (1974) Bull. Acad. Pol. Sci., Sér. Sci. Chim. , vol.22 , pp. 871-876
    • Krygowski, T.M.1    Kruszewski, J.2
  • 35
    • 27544510655 scopus 로고
    • Crystallographic studies of inter- and intramolecular interactions reflected in aromatic character of π-electron systems
    • Krygowski T.M. Crystallographic studies of inter- and intramolecular interactions reflected in aromatic character of π-electron systems. J. Chem. Inf. Comput. Sci. 1993, 33:70-78.
    • (1993) J. Chem. Inf. Comput. Sci. , vol.33 , pp. 70-78
    • Krygowski, T.M.1
  • 36
    • 0035353541 scopus 로고    scopus 로고
    • Structural aspects of aromaticity
    • (and references cited therein.)
    • Krygowski T.M., Cyrański M.K. Structural aspects of aromaticity. Chem. Rev. 2001, 101:1385-1419. (and references cited therein.).
    • (2001) Chem. Rev. , vol.101 , pp. 1385-1419
    • Krygowski, T.M.1    Cyrański, M.K.2
  • 37
    • 27744578989 scopus 로고    scopus 로고
    • Energetic aspects of cyclic pi-electron delocalization: evaluation of the methods of estimating aromatic stabilization energies
    • (and references cited therein.)
    • Cyrański M.K. Energetic aspects of cyclic pi-electron delocalization: evaluation of the methods of estimating aromatic stabilization energies. Chem. Rev. 2005, 105:3773-3811. (and references cited therein.).
    • (2005) Chem. Rev. , vol.105 , pp. 3773-3811
    • Cyrański, M.K.1
  • 38
    • 78049494014 scopus 로고    scopus 로고
    • A DFT study on the magnetostructural property of ferromagnetic heteroverdazyl diradicals with phenylene coupler
    • Bhattacharya D., Shil S., Panda A., Misra A. A DFT study on the magnetostructural property of ferromagnetic heteroverdazyl diradicals with phenylene coupler. J. Phys. Chem. A 2010, 114:11833-11841.
    • (2010) J. Phys. Chem. A , vol.114 , pp. 11833-11841
    • Bhattacharya, D.1    Shil, S.2    Panda, A.3    Misra, A.4
  • 39
    • 33845534159 scopus 로고    scopus 로고
    • The question of aromaticity in open-shell cations and anions as ion-radical offsprings of polycyclic aromatic and antiaromatic hydrocarbons
    • Rosokha S.V., Kochi J.K. The question of aromaticity in open-shell cations and anions as ion-radical offsprings of polycyclic aromatic and antiaromatic hydrocarbons. J. Org. Chem. 2006, 71:9357-9365.
    • (2006) J. Org. Chem. , vol.71 , pp. 9357-9365
    • Rosokha, S.V.1    Kochi, J.K.2
  • 42
    • 84962449865 scopus 로고    scopus 로고
    • Quantum-chemical studies of the consequences of one-electron oxidation and one-electron reduction for imidazole in the gas phase and water
    • Raczyńska E.D. Quantum-chemical studies of the consequences of one-electron oxidation and one-electron reduction for imidazole in the gas phase and water. Comput. Theor. Chem. 2012, 993:73-79.
    • (2012) Comput. Theor. Chem. , vol.993 , pp. 73-79
    • Raczyńska, E.D.1
  • 43
    • 84864647302 scopus 로고    scopus 로고
    • Consequences of one-electron oxidation and one-electron reduction for 4-aminopyrimidine - DFT studies
    • Raczyńska E.D., Kolczyńska K., Stepniewski T.M. Consequences of one-electron oxidation and one-electron reduction for 4-aminopyrimidine - DFT studies. J. Mol. Model. 2012, 18:3523-3533.
    • (2012) J. Mol. Model. , vol.18 , pp. 3523-3533
    • Raczyńska, E.D.1    Kolczyńska, K.2    Stepniewski, T.M.3
  • 44
    • 77949329699 scopus 로고    scopus 로고
    • Influence of one-electron oxidation and one-electron reduction on the tautomeric preferences for purine
    • Raczyńska E.D., Kamińska B., Szelag M. Influence of one-electron oxidation and one-electron reduction on the tautomeric preferences for purine. Anal. Bioanal. Electrochem. 2009, 1:83-97.
    • (2009) Anal. Bioanal. Electrochem. , vol.1 , pp. 83-97
    • Raczyńska, E.D.1    Kamińska, B.2    Szelag, M.3
  • 45
    • 84961980459 scopus 로고    scopus 로고
    • Variations of the tautomeric preferences and π-electron delocalization for the neutral and redox forms of purine when proceeding from the gas phase (DFT) to water (PCM)
    • Raczyńska E.D., Kamińska B. Variations of the tautomeric preferences and π-electron delocalization for the neutral and redox forms of purine when proceeding from the gas phase (DFT) to water (PCM). J. Mol. Model. 2013, 19:3947-3960.
    • (2013) J. Mol. Model. , vol.19 , pp. 3947-3960
    • Raczyńska, E.D.1    Kamińska, B.2
  • 46
    • 0004226989 scopus 로고
    • D.C. Heath and Company, Toronto, Chapt. 1
    • Ege S.N. Organic Chemistry 1989, D.C. Heath and Company, Toronto, Chapt. 1.
    • (1989) Organic Chemistry
    • Ege, S.N.1
  • 49
    • 84864649762 scopus 로고    scopus 로고
    • Aromatic character of heptafulvene and its complexes with halogen atoms
    • Krygowski T.M., Ozimiński W.P., Cyrański M.K. Aromatic character of heptafulvene and its complexes with halogen atoms. J. Mol. Model. 2012, 18:2453-2460.
    • (2012) J. Mol. Model. , vol.18 , pp. 2453-2460
    • Krygowski, T.M.1    Ozimiński, W.P.2    Cyrański, M.K.3
  • 50
    • 84862648130 scopus 로고    scopus 로고
    • Aromaticity in heterocycles: new HOMA index parametrization
    • Frizzo C.P., Martin M.P. Aromaticity in heterocycles: new HOMA index parametrization. Struct. Chem. 2012, 23:375-380.
    • (2012) Struct. Chem. , vol.23 , pp. 375-380
    • Frizzo, C.P.1    Martin, M.P.2


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