Ionomic screening of field-grown soybean identifies mutants with altered seed elemental composition

Plant Genome

Volumn 6, Issue 2, 2013, Pages

  Ziegler, Greg ^a   Terauchi, Aimee ^b   Becker, Anthony ^a   Armstrong, Paul ^b   Hudson, Karen ^b   Baxter, Ivan ^b  

^a DONALD DANFORTH PLANT SCIENCE CENTER   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84883811165     PISSN: None     EISSN: 19403372     Source Type: Journal    
DOI: 10.3835/plantgenome2012.07.0012     Document Type: Article

References (15)

1. Baxter, I., and B. Dilkes. 2012. Elemental profiles reflect plant adaptations to the environment. Science 336:1661-1663. doi:10.1126/ science.1219992.
2. Baxter, I., P.S. Hosmani, A. Rus, B. Lahner, J.O. Borevitz, B. Muthukumar, M.V. Mickelbart, L. Schreiber, R.B. Franke, and D.E. Salt. 2009. Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis. PLoS Genet. 5(5):e1000492. doi:10.1371/journal.pgen.1000492.
3. Baxter, I., B. Muthukumar, H.C. Park, P. Buchner, B. Lahner, J. Danku, K. Zhao, J. Lee, M.J. Hawkesford, M.L. Guerinot, and D.E. Salt. 2008. Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1). PLoS Genet. 4(2):e1000004. doi:10.1371/journal.pgen.1000004.
4. Bolon, Y.T., W.J. Haun, W.W. Xu, D. Grant, M.G. Stacey, R.T. Nelson, D.J. Gerhardt, J.A. Jeddeloh, G. Stacey, G.J. Muehlbauer, J.H. Orf, S.L. Naeve, R.M. Stupar, and C.P. Vance. 2011. Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiol. 156:240-253. doi:10.1104/pp.110.170811.
5. Chao, D.Y., K. Gable, M. Chen, I. Baxter, C.R. Dietrich, E.B. Cahoon, M.L. Guerinot, B. Lahner, S. Lu, J.E. Markham, J. Morrissey, G. Han, S.D. Gupta, J.M. Harmon, J.G. Jaworski, T.M. Dunn, and D.E. Salt. 2011. Sphingolipids in the root play an important role in regulating the leaf ionome in Arabidopsis thaliana. Plant Cell 23:1061-1081.
6. Chen, H., and P.C. Boutros. 2011. VennDiagram: A package for the generation of highly-customizable Venn and Euler diagrams in R. BMC Bioinformatics 12:35-35. doi:10.1186/1471-2105-12-35.
7. Chen, Z., T. Shinano, T. Ezawa, J. Wasaki, K. Kimura, M. Osaki, and Y. Zhu. 2009. Elemental interconnections in Lotus japonicus: A systematic study of the affects of elements additions on different natural variants. Soil Sci. Plant Nutr. 55:91-101. doi:10.1111/j.1747- 0765.2008.00311.x
8. Cooper, J.L., B.J. Till, R.G. Laport, M.C. Darlow, J.M. Kleffner, A. Jamai, T. El-Mellouki, S. Liu, R. Ritchie, N. Nielsen, K.D. Bilyeu, K. Meksem, L. Comai, and S. Henikoff. 2008. TILLING to detect induced mutations in soybean. BMC Plant Biol. 8:9. doi:10.1186/1471-2229-8-9.
9. Davies, L., and U. Gather. 1993. The identification of multiple outliers. J. Am. Stat. Assoc. 88:782-792. doi:10.1080/01621459.1993.10476339.
10. Haugen, J.-E., O. Tomic, and K. Kvaal. 2000. A calibration method for handling the temporal drift of solid state gas-sensors. Anal. Chim. Acta 407:23-39. doi:10.1016/S0003-2670(99)00784-9.
11. Lahner, B., J. Gong, M. Mahmoudian, E.L. Smith, K.B. Abid, E.E. Rogers, M.L. Guerinot, J.F. Harper, J.M. Ward, L. McIntyre, J.I. Schroeder, and D.E. Salt. 2003. Genomic scale profiling of nutrient and trace elements in Arabidopsis thaliana. Nat. Biotechnol. 21:1215-1221.
12. Messina, M.J. 1999. Legumes and soybeans: Overview of their nutritional profiles and health effects. Am. J. Clin. Nutr. 70:439S-450S.
13. Nickerson, R.S. 1998. Confirmation bias: A ubiquitous phenomenon in many guises. Rev. Gen. Psychol. 2:175-220. doi:10.1037/1089- 2680.2.2.175.
14. Rus, A., I. Baxter, B. Muthukumar, J. Gustin, B. Lahner, E. Yakubova, and D.E. Salt. 2006. Natural variants of AtHKT1 enhance Na+ accumulation in two wild populations of Arabidopsis. PLoS Genet. 2(12):e210. doi:10.1371/journal.pgen.0020210.
15. Wickham, H. 2007. Reshaping data with the reshape package. J. Stat. Software 21:1-20.