메뉴 건너뛰기




Volumn 288, Issue 36, 2013, Pages 26067-26077

Ribosomal RNA gene transcription mediated by the master genome regulator protein CCCTC-binding factor (CTCF) is negatively regulated by the condensin complex

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEINS; CONDENSIN; RIBOSOMAL RNA; RRNA GENES;

EID: 84883727456     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M113.486175     Document Type: Article
Times cited : (47)

References (48)
  • 1
    • 34249307315 scopus 로고    scopus 로고
    • Nuclear organization of the genome and the potential for gene regulation
    • Fraser, P., and Bickmore, W. (2007) Nuclear organization of the genome and the potential for gene regulation. Nature 447, 413-417
    • (2007) Nature , vol.447 , pp. 413-417
    • Fraser, P.1    Bickmore, W.2
  • 2
    • 35548990188 scopus 로고    scopus 로고
    • Wegather together. Insulators and genome organization
    • Wallace, J. A., and Felsenfeld, G. (2007)Wegather together. Insulators and genome organization. Curr. Opin. Genet. Dev. 17, 400-407
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 400-407
    • Wallace, J.A.1    Felsenfeld, G.2
  • 3
    • 67549119096 scopus 로고    scopus 로고
    • CTCF Master weaver of the genome
    • Phillips, J. E., and Corces, V. G. (2009) CTCF. Master weaver of the genome. Cell 137, 1194-1211
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 4
    • 0035910395 scopus 로고    scopus 로고
    • Insulators and boundaries Versatile regulatory elements in the eukaryotic genome
    • Bell, A. C., West, A. G., and Felsenfeld, G. (2001) Insulators and boundaries. Versatile regulatory elements in the eukaryotic genome. Science 291, 447-450
    • (2001) Science , vol.291 , pp. 447-450
    • Bell, A.C.1    West, A.G.2    Felsenfeld, G.3
  • 5
    • 78349252731 scopus 로고    scopus 로고
    • Mediation of CTCF transcriptional insulation by DEADbox RNA-binding protein p68 and steroid receptor RNA activator SRA
    • Yao, H., Brick, K., Evrard, Y., Xiao, T., Camerini-Otero, R. D., and Felsenfeld, G. (2010) Mediation of CTCF transcriptional insulation by DEADbox RNA-binding protein p68 and steroid receptor RNA activator SRA. Genes Dev. 24, 2543-2555
    • (2010) Genes Dev. , vol.24 , pp. 2543-2555
    • Yao, H.1    Brick, K.2    Evrard, Y.3    Xiao, T.4    Camerini-Otero, R.D.5    Felsenfeld, G.6
  • 7
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon, J. R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J. S., and Ren, B. (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376-380
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 8
    • 48749124952 scopus 로고    scopus 로고
    • Chromatin insulators and cohesins
    • Göndör, A., and Ohlsson, R. (2008) Chromatin insulators and cohesins. EMBO Rep. 9, 327-329
    • (2008) EMBO Rep. , vol.9 , pp. 327-329
    • Göndör, A.1    Ohlsson, R.2
  • 10
    • 77952563068 scopus 로고    scopus 로고
    • Condensin and cohesin complexity the expanding repertoire of functions
    • Wood, A. J., Severson, A. F., and Meyer, B. J. (2010) Condensin and cohesin complexity. The expanding repertoire of functions. Nat. Rev. Genet. 11, 391-404
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 391-404
    • Wood, A.J.1    Severson, A.F.2    Meyer, B.J.3
  • 11
    • 77953574613 scopus 로고    scopus 로고
    • Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins
    • Griese, J. J., Witte, G., and Hopfner, K. P. (2010) Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins. Nucleic Acids Res. 38, 3454-3465
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3454-3465
    • Griese, J.J.1    Witte, G.2    Hopfner, K.P.3
  • 12
    • 3042809666 scopus 로고    scopus 로고
    • Spatial and temporal regulation of Condensins i and II in mitotic chromosome assembly in human cells
    • Ono, T., Fang, Y., Spector, D. L., and Hirano, T. (2004) Spatial and temporal regulation of Condensins I and II in mitotic chromosome assembly in human cells. Mol. Biol. Cell 15, 3296-3308
    • (2004) Mol. Biol. Cell , vol.15 , pp. 3296-3308
    • Ono, T.1    Fang, Y.2    Spector, D.L.3    Hirano, T.4
  • 13
    • 0038506040 scopus 로고    scopus 로고
    • Life on a planet of its own Regulation of RNA polymerase i transcription in the nucleolus
    • Grummt, I. (2003) Life on a planet of its own. Regulation of RNA polymerase I transcription in the nucleolus. Genes Dev. 17, 1691-1702
    • (2003) Genes Dev. , vol.17 , pp. 1691-1702
    • Grummt, I.1
  • 15
    • 76249101086 scopus 로고    scopus 로고
    • Abundance of ribosomal RNA gene copies maintains genome integrity
    • Ide, S., Miyazaki, T., Maki, H., and Kobayashi, T. (2010) Abundance of ribosomal RNA gene copies maintains genome integrity. Science 327, 693-696
    • (2010) Science , vol.327 , pp. 693-696
    • Ide, S.1    Miyazaki, T.2    Maki, H.3    Kobayashi, T.4
  • 18
    • 36049022778 scopus 로고    scopus 로고
    • JHDM1B/FBXL10 is a nucleolar protein that represses transcription of ribosomal RNA genes
    • Frescas, D., Guardavaccaro, D., Bassermann, F., Koyama-Nasu, R., and Pagano, M. (2007) JHDM1B/FBXL10 is a nucleolar protein that represses transcription of ribosomal RNA genes. Nature 450, 309-313
    • (2007) Nature , vol.450 , pp. 309-313
    • Frescas, D.1    Guardavaccaro, D.2    Bassermann, F.3    Koyama-Nasu, R.4    Pagano, M.5
  • 19
    • 0037363075 scopus 로고    scopus 로고
    • Does the ribosome translate cancer? Nat
    • Ruggero, D., and Pandolfi, P. P. (2003) Does the ribosome translate cancer? Nat. Rev. Cancer 3, 179-192
    • (2003) Rev. Cancer , vol.3 , pp. 179-192
    • Ruggero, D.1    Pandolfi, P.P.2
  • 20
    • 11244281646 scopus 로고    scopus 로고
    • RNA polymerases i and III, growth control and cancer
    • White, R. J. (2005) RNA polymerases I and III, growth control and cancer. Nat. Rev. Mol. Cell Biol. 6, 69-78
    • (2005) Nat. Rev. Mol. Cell Biol. , vol.6 , pp. 69-78
    • White, R.J.1
  • 24
    • 79251647296 scopus 로고    scopus 로고
    • The CCCTC-binding factor (CTCF) of Drosophila contributes to the regulation of the ribosomalDNA and nucleolar stability
    • Guerrero, P. A., and Maggert, K. A. (2011) The CCCTC-binding factor (CTCF) of Drosophila contributes to the regulation of the ribosomalDNA and nucleolar stability. PloS ONE 6, e16401
    • (2011) PloS ONE , vol.6
    • Guerrero, P.A.1    Maggert, K.A.2
  • 27
    • 22344439942 scopus 로고    scopus 로고
    • Dynamic molecular linkers of the genome the first decade of SMC proteins
    • Losada, A., and Hirano, T. (2005) Dynamic molecular linkers of the genome. The first decade of SMC proteins. Genes Dev. 19, 1269-1287
    • (2005) Genes Dev. , vol.19 , pp. 1269-1287
    • Losada, A.1    Hirano, T.2
  • 28
    • 33749675680 scopus 로고    scopus 로고
    • Histone modifications and the chromatin scaffold for meiotic chromosome architecture
    • Ivanovska, I., and Orr-Weaver, T. L. (2006) Histone modifications and the chromatin scaffold for meiotic chromosome architecture. Cell Cycle 5, 2064-2071
    • (2006) Cell Cycle , vol.5 , pp. 2064-2071
    • Ivanovska, I.1    Orr-Weaver, T.L.2
  • 29
    • 35148853473 scopus 로고    scopus 로고
    • Compacting DNA during the interphase Condensin maintains rDNA integrity
    • Tsang, C. K., Wei, Y., and Zheng, X. F. (2007) Compacting DNA during the interphase. Condensin maintains rDNA integrity. Cell Cycle 6, 2213-2218
    • (2007) Cell Cycle , vol.6 , pp. 2213-2218
    • Tsang, C.K.1    Wei, Y.2    Zheng, X.F.3
  • 30
    • 0036135638 scopus 로고    scopus 로고
    • UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat
    • O'Sullivan, A. C., Sullivan, G. J., and McStay, B. (2002) UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat. Mol. Cell. Biol. 22, 657-668
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 657-668
    • O'sullivan, A.C.1    Sullivan, G.J.2    McStay, B.3
  • 31
    • 0842310349 scopus 로고    scopus 로고
    • CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
    • Yusufzai, T. M., Tagami, H., Nakatani, Y., and Felsenfeld, G. (2004) CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species. Mol. Cell 13, 291-298
    • (2004) Mol. Cell , vol.13 , pp. 291-298
    • Yusufzai, T.M.1    Tagami, H.2    Nakatani, Y.3    Felsenfeld, G.4
  • 32
    • 0023805497 scopus 로고
    • Functional cooperativity between transcription factors UBF1 and SL1 mediates human ribosomal RNA synthesis
    • Bell, S. P., Learned, R. M., Jantzen, H. M., and Tjian, R. (1988) Functional cooperativity between transcription factors UBF1 and SL1 mediates human ribosomal RNA synthesis. Science 241, 1192-1197
    • (1988) Science , vol.241 , pp. 1192-1197
    • Bell, S.P.1    Learned, R.M.2    Jantzen, H.M.3    Tjian, R.4
  • 35
    • 0037457977 scopus 로고    scopus 로고
    • CTCF functions as a critical regulator of cell-cycle arrest and death after ligation of the B cell receptor on immature B cells
    • Qi, C. F., Martensson, A., Mattioli, M., Dalla-Favera, R., Lobanenkov, V. V., and Morse, H. C. (2003) CTCF functions as a critical regulator of cell-cycle arrest and death after ligation of the B cell receptor on immature B cells. Proc. Natl. Acad. Sci. U.S.A. 100, 633-638
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 633-638
    • Qi, C.F.1    Martensson, A.2    Mattioli, M.3    Dalla-Favera, R.4    Lobanenkov, V.V.5    Morse, H.C.6
  • 39
    • 84862742079 scopus 로고    scopus 로고
    • CTCF-dependent chromatin insulator as a built-in attenuator of angiogenesis
    • Lu, J., and Tang, M. (2012) CTCF-dependent chromatin insulator as a built-in attenuator of angiogenesis. Transcription 3, 73-77
    • (2012) Transcription , vol.3 , pp. 73-77
    • Lu, J.1    Tang, M.2
  • 42
    • 77649339614 scopus 로고    scopus 로고
    • Nucleolar retention of a translational C/EBP isoform stimulates rDNA transcription and cell size
    • Müller, C., Bremer, A., Schreiber, S., Eichwald, S., and Calkhoven, C. F. (2010) Nucleolar retention of a translational C/EBP isoform stimulates rDNA transcription and cell size. EMBO J. 29, 897-909
    • (2010) EMBO J. , vol.29 , pp. 897-909
    • Müller, C.1    Bremer, A.2    Schreiber, S.3    Eichwald, S.4    Calkhoven, C.F.5
  • 43
    • 78650673361 scopus 로고    scopus 로고
    • Streptavidin-binding peptide (SBP)-tagged SMC2 allows single-step affinity fluorescence, blotting or purification of the condensin complex
    • Kim, J. H., Chang, T. M., Graham, A. N., Choo, K. H., Kalitsis, P., and Hudson, D. F. (2010) Streptavidin-binding peptide (SBP)-tagged SMC2 allows single-step affinity fluorescence, blotting or purification of the condensin complex. BMC Biochem. 11, 50
    • (2010) BMC Biochem. , vol.11 , pp. 50
    • Kim, J.H.1    Chang, T.M.2    Graham, A.N.3    Choo, K.H.4    Kalitsis, P.5    Hudson, D.F.6
  • 44
    • 0035795422 scopus 로고    scopus 로고
    • Nucleolar components involved in ribosome biogenesis cycle between the nucleolus and nucleoplasm in interphase cells
    • Chen, D., and Huang, S. (2001) Nucleolar components involved in ribosome biogenesis cycle between the nucleolus and nucleoplasm in interphase cells. J. Cell Biol. 153, 169-176
    • (2001) J. Cell Biol. , vol.153 , pp. 169-176
    • Chen, D.1    Huang, S.2
  • 45
    • 50049126078 scopus 로고    scopus 로고
    • Identification of cis-acting sites for condensin loading onto budding yeast chromosomes
    • D'Ambrosio, C., Schmidt, C. K., Katou, Y., Kelly, G., Itoh, T., Shirahige, K., and Uhlmann, F. (2008) Identification of cis-acting sites for condensin loading onto budding yeast chromosomes. Genes Dev. 22, 2215-2227
    • (2008) Genes Dev. , vol.22 , pp. 2215-2227
    • D'ambrosio, C.1    Schmidt, C.K.2    Katou, Y.3    Kelly, G.4    Itoh, T.5    Shirahige, K.6    Uhlmann, F.7
  • 46
    • 0035076210 scopus 로고    scopus 로고
    • Histone acetylation at promoters is differentially affected by specific activators and repressors
    • Deckert, J., and Struhl, K. (2001) Histone acetylation at promoters is differentially affected by specific activators and repressors. Mol. Cell. Biol. 21, 2726-2735
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 2726-2735
    • Deckert, J.1    Struhl, K.2
  • 48
    • 73449096759 scopus 로고    scopus 로고
    • The role of UBF in regulating the structure and dynamics of transcriptionally active rDNA chromatin
    • Sanij, E., and Hannan, R. D. (2009) The role of UBF in regulating the structure and dynamics of transcriptionally active rDNA chromatin. Epigenetics 4, 374-382
    • (2009) Epigenetics , vol.4 , pp. 374-382
    • Sanij, E.1    Hannan, R.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.