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Volumn 23, Issue 2, 2014, Pages 167-174

A new insight into the phylogeny of vascular cryptogams with special reference to Selaginella and Isoetes inferred from nuclear ITS/5.8S rDNA sequences

Author keywords

ClustalW; Ferns; Isoetaceae; ITS 5.8S; Maximum parsimony; MEGA; Selaginellaceae

Indexed keywords


EID: 84883561608     PISSN: 09717811     EISSN: 09741275     Source Type: Journal    
DOI: 10.1007/s13562-013-0198-6     Document Type: Article
Times cited : (9)

References (44)
  • 2
    • 67651011899 scopus 로고    scopus 로고
    • Selaginella and 400 million years of separation
    • Banks JA (2009) Selaginella and 400 million years of separation. Annu Rev Plant Biol 60: 223-238.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 223-238
    • Banks, J.A.1
  • 3
    • 78349277363 scopus 로고    scopus 로고
    • Phylogenetic relationships in genus Arachis based on ITS and 5.8S rDNA sequences
    • Bechara MD, Moretzsohn MC, Palmieri DA, Monteiro JP et al (2010) Phylogenetic relationships in genus Arachis based on ITS and 5. 8S rDNA sequences. BMC Plant Biol 10: 255.
    • (2010) BMC Plant Biol , vol.10 , pp. 255
    • Bechara, M.D.1    Moretzsohn, M.C.2    Palmieri, D.A.3    Monteiro, J.P.4
  • 4
    • 77950205998 scopus 로고    scopus 로고
    • The Genus Isoetes L. (Isoetaceae, Lycophyta) in South-Western Asia
    • Bolin JF, Bray RD, Keskin M, Musselman LJ (2008) The Genus Isoetes L. (Isoetaceae, Lycophyta) in South-Western Asia. Turk J Bot 32: 447-457.
    • (2008) Turk J Bot , vol.32 , pp. 447-457
    • Bolin, J.F.1    Bray, R.D.2    Keskin, M.3    Musselman, L.J.4
  • 5
    • 0034115566 scopus 로고    scopus 로고
    • Phylogeny of Taxaceae and Cephalotaxaceae genera inferred from chloroplast matK Gene and nuclear rDNA ITS region
    • Cheng Y, Nicolson RG, Tripp K, Chaw SM (2000) Phylogeny of Taxaceae and Cephalotaxaceae genera inferred from chloroplast matK Gene and nuclear rDNA ITS region. Mol Phylogenet Evol 14(3): 353-365.
    • (2000) Mol Phylogenet Evol , vol.14 , Issue.3 , pp. 353-365
    • Cheng, Y.1    Nicolson, R.G.2    Tripp, K.3    Chaw, S.M.4
  • 6
    • 80052472709 scopus 로고    scopus 로고
    • A linear sequence of extant families and genera of lycophytes and ferns
    • Christenhusz MJM, Zhang XC, Schneider H (2011) A linear sequence of extant families and genera of lycophytes and ferns. Phytotaxa 19: 7-54.
    • (2011) Phytotaxa , vol.19 , pp. 7-54
    • Christenhusz, M.J.M.1    Zhang, X.C.2    Schneider, H.3
  • 7
    • 0032127850 scopus 로고    scopus 로고
    • A 5.8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution
    • Cullings KW, Vogler DR (1998) A 5. 8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution. Mol Ecol 7: 919-923.
    • (1998) Mol Ecol , vol.7 , pp. 919-923
    • Cullings, K.W.1    Vogler, D.R.2
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 0039105962 scopus 로고    scopus 로고
    • Early lycophyte evolution
    • Gensel PG, Berry CM (2001) Early lycophyte evolution. Am Fern J 91: 74-98.
    • (2001) Am Fern J , vol.91 , pp. 74-98
    • Gensel, P.G.1    Berry, C.M.2
  • 10
    • 34547327967 scopus 로고    scopus 로고
    • Molecular phylogeny of horsetails (Equisetum) including chloroplast atpB sequences
    • Guillon JM (2007) Molecular phylogeny of horsetails (Equisetum) including chloroplast atpB sequences. J Plant Res 120: 569-574.
    • (2007) J Plant Res , vol.120 , pp. 569-574
    • Guillon, J.M.1
  • 11
    • 0022376704 scopus 로고
    • Dating the human-ape split by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape split by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 12
    • 0023413051 scopus 로고
    • Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences
    • Hori H, Osawa S (1987) Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences. Mol Biol Evol 4: 445-472.
    • (1987) Mol Biol Evol , vol.4 , pp. 445-472
    • Hori, H.1    Osawa, S.2
  • 13
    • 0001078679 scopus 로고
    • Evolution of green plants as deduced from 5S rRNA sequences
    • Hori H, Lim BL, Osawa S (1985) Evolution of green plants as deduced from 5S rRNA sequences. Proc Natl Acad Sci USA 82: 820-823.
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 820-823
    • Hori, H.1    Lim, B.L.2    Osawa, S.3
  • 14
    • 0036814852 scopus 로고    scopus 로고
    • Phylogenetic analysis of nuclear ribosomal ITS/5.8S sequences in the tribe Millettieae (Fabaceae): Poecilanthe-Cyclolobium, the core Millettieae, and the Callerya group
    • Hu JM, Lavin M, Wojciechowski MF, Sanderson MJ (2002) Phylogenetic analysis of nuclear ribosomal ITS/5. 8S sequences in the tribe Millettieae (Fabaceae): Poecilanthe-Cyclolobium, the core Millettieae, and the Callerya group. Syst Bot 27(4): 722-733.
    • (2002) Syst Bot , vol.27 , Issue.4 , pp. 722-733
    • Hu, J.M.1    Lavin, M.2    Wojciechowski, M.F.3    Sanderson, M.J.4
  • 15
    • 77958040395 scopus 로고    scopus 로고
    • Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages
    • Karol KG, Arumuganathan K, Boore JL, Duffy AM, Everett KDE et al (2010) Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages. BMC Evol Biol 10: 321.
    • (2010) BMC Evol Biol , vol.10 , pp. 321
    • Karol, K.G.1    Arumuganathan, K.2    Boore, J.L.3    Duffy, A.M.4    Everett, K.D.E.5
  • 16
    • 0030885968 scopus 로고    scopus 로고
    • The origin and early evolution of plants on land
    • Kenrick P, Crane PR (1997) The origin and early evolution of plants on land. Nature 389: 33-39.
    • (1997) Nature , vol.389 , pp. 33-39
    • Kenrick, P.1    Crane, P.R.2
  • 17
    • 77953523655 scopus 로고    scopus 로고
    • Speciation pathway of Isoetes (Isoetaceae) in East Asia inferred from molecular phylogenetic relationships
    • Kim C, Shin H, Chang YT, Choi HK (2010) Speciation pathway of Isoetes (Isoetaceae) in East Asia inferred from molecular phylogenetic relationships. Am J Bot 97(6): 958-969.
    • (2010) Am J Bot , vol.97 , Issue.6 , pp. 958-969
    • Kim, C.1    Shin, H.2    Chang, Y.T.3    Choi, H.K.4
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 19
    • 0029046676 scopus 로고
    • Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum arose prior to Psilotum
    • Kolukisaoglu HU, Marx S, Wiegmann C, Hanelt S, Schneider-Poetsch HA (1995) Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum arose prior to Psilotum. J Mol Evol 41: 329-337.
    • (1995) J Mol Evol , vol.41 , pp. 329-337
    • Kolukisaoglu, H.U.1    Marx, S.2    Wiegmann, C.3    Hanelt, S.4    Schneider-Poetsch, H.A.5
  • 20
    • 0036202558 scopus 로고    scopus 로고
    • Phylogenetic relationships in Selaginellaceae based on rbcL sequences
    • Korall P, Kenrick P (2002) Phylogenetic relationships in Selaginellaceae based on rbcL sequences. Am J Bot 89: 506-517.
    • (2002) Am J Bot , vol.89 , pp. 506-517
    • Korall, P.1    Kenrick, P.2
  • 21
    • 2442585571 scopus 로고    scopus 로고
    • The phylogenetic history of Selaginellaceae based on DNA sequences from the plastid and nucleus: extreme substitution rates and rate heterogeneity
    • Korall P, Kenrick P (2004) The phylogenetic history of Selaginellaceae based on DNA sequences from the plastid and nucleus: extreme substitution rates and rate heterogeneity. Mol Phylogenet Evol 31: 852-864.
    • (2004) Mol Phylogenet Evol , vol.31 , pp. 852-864
    • Korall, P.1    Kenrick, P.2
  • 22
    • 0029826327 scopus 로고    scopus 로고
    • Molecular evolution of pteridophytes and their relationships to seed plants: evidence from complete 18S rRNA gene sequences
    • Kranz HD, Huss VAR (1996) Molecular evolution of pteridophytes and their relationships to seed plants: evidence from complete 18S rRNA gene sequences. Plant Syst Evol 202: 1-11.
    • (1996) Plant Syst Evol , vol.202 , pp. 1-11
    • Kranz, H.D.1    Huss, V.A.R.2
  • 23
    • 0034923337 scopus 로고    scopus 로고
    • Disparity index: a simple statistic to measure and test the homogeneity of substitution patterns between molecular sequences
    • Kumar S, Gadagkar SR (2001) Disparity index: a simple statistic to measure and test the homogeneity of substitution patterns between molecular sequences. Genetics 158: 1321-1327.
    • (2001) Genetics , vol.158 , pp. 1321-1327
    • Kumar, S.1    Gadagkar, S.R.2
  • 24
    • 0029863292 scopus 로고    scopus 로고
    • RNA editing in bryophytes and a molecular phylogeny of land plants
    • Malek O et al (1996) RNA editing in bryophytes and a molecular phylogeny of land plants. EMBO J 15: 1403-1411.
    • (1996) EMBO J , vol.15 , pp. 1403-1411
    • Malek, O.1
  • 25
    • 0028456067 scopus 로고
    • Phylogenetic analysis of green plant rbcL sequences
    • Manhart JR (1994) Phylogenetic analysis of green plant rbcL sequences. Mol Phylogenet Evol 3: 114-127.
    • (1994) Mol Phylogenet Evol , vol.3 , pp. 114-127
    • Manhart, J.R.1
  • 26
    • 77949731523 scopus 로고    scopus 로고
    • Isoëtes (Isoetaceae), Ophioglossum and Botrychium (Ophioglossaceae) in Calabria (S Italy): more karyological and taxonomical data
    • Peruzzi L, Cesca G, Puntillo D (2003) Isoëtes (Isoetaceae), Ophioglossum and Botrychium (Ophioglossaceae) in Calabria (S Italy): more karyological and taxonomical data. Caryologia 56(3): 359-363.
    • (2003) Caryologia , vol.56 , Issue.3 , pp. 359-363
    • Peruzzi, L.1    Cesca, G.2    Puntillo, D.3
  • 27
    • 0040884249 scopus 로고    scopus 로고
    • Isoetalean lycopsid evolution: from the Devonian to the present
    • Pigg KB (2001) Isoetalean lycopsid evolution: from the Devonian to the present. Am Fern J 91: 99-114.
    • (2001) Am Fern J , vol.91 , pp. 99-114
    • Pigg, K.B.1
  • 28
    • 0032996560 scopus 로고    scopus 로고
    • Phylogeny of early land plants: insights from genes and genomes
    • Qiu YL, Palmer JD (1999) Phylogeny of early land plants: insights from genes and genomes. Trends Plant Sci 4(1): 26-30.
    • (1999) Trends Plant Sci , vol.4 , Issue.1 , pp. 26-30
    • Qiu, Y.L.1    Palmer, J.D.2
  • 29
    • 34249807028 scopus 로고    scopus 로고
    • A nonflowering land plant phylogeny inferred from nucleotide sequences of seven chloroplast, mitochondrial and nuclear genes
    • Qiu YL, Li L, Wang B, Chen Z, Dombrovska O et al (2007) A nonflowering land plant phylogeny inferred from nucleotide sequences of seven chloroplast, mitochondrial and nuclear genes. Int J Plant Sci 168: 691-708.
    • (2007) Int J Plant Sci , vol.168 , pp. 691-708
    • Qiu, Y.L.1    Li, L.2    Wang, B.3    Chen, Z.4    Dombrovska, O.5
  • 30
    • 0026598577 scopus 로고
    • Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants
    • Raubeson LA, Jansen RK (1992) Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants. Science 255: 1697-1699.
    • (1992) Science , vol.255 , pp. 1697-1699
    • Raubeson, L.A.1    Jansen, R.K.2
  • 31
    • 0036254372 scopus 로고    scopus 로고
    • Phylogeny of Isoetes (Lycopsida): resolving basal relationships using rbcL sequences
    • Rydin C, Wikstrom N (2002) Phylogeny of Isoetes (Lycopsida): resolving basal relationships using rbcL sequences. Taxon 51: 83-89.
    • (2002) Taxon , vol.51 , pp. 83-89
    • Rydin, C.1    Wikstrom, N.2
  • 32
    • 70349491259 scopus 로고    scopus 로고
    • Is morphology really at odds with molecules in estimating fern phylogeny?
    • Schneider H, Smith AR, Pryer KM (2009) Is morphology really at odds with molecules in estimating fern phylogeny? Syst Bot 29: 455-475.
    • (2009) Syst Bot , vol.29 , pp. 455-475
    • Schneider, H.1    Smith, A.R.2    Pryer, K.M.3
  • 33
    • 33846529452 scopus 로고    scopus 로고
    • Plastid atpA data provide improved support for deep relationships among ferns
    • Schuettpelz E, Korall P, Pryer KM (2006) Plastid atpA data provide improved support for deep relationships among ferns. Taxon 55: 897-906.
    • (2006) Taxon , vol.55 , pp. 897-906
    • Schuettpelz, E.1    Korall, P.2    Pryer, K.M.3
  • 34
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512-526.
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 35
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor joining method
    • Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor joining method. Proc Natl Acad Sci USA 101: 11030-11035.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 36
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 37
    • 11444262662 scopus 로고    scopus 로고
    • Phylogenetic relationships of Isoetes in China as revealed by nucleotide sequences of the nuclear ribosomal ITS region and the second intron of a LEAFY homolog
    • Taylor WC, Lekschas AR, Wang QF, Liu X, Napier NS, Hoot SB (2004) Phylogenetic relationships of Isoetes in China as revealed by nucleotide sequences of the nuclear ribosomal ITS region and the second intron of a LEAFY homolog. Am Fern J 94(4): 196-205.
    • (2004) Am Fern J , vol.94 , Issue.4 , pp. 196-205
    • Taylor, W.C.1    Lekschas, A.R.2    Wang, Q.F.3    Liu, X.4    Napier, N.S.5    Hoot, S.B.6
  • 38
    • 33749653470 scopus 로고    scopus 로고
    • Analyses of the ribosomal internal transcribed spacers (ITS) and the 5.8S gene indicate that extremely high rDNA Heterogeneity is a unique feature in the Scleractinian coral genus Acropora (Scleractinia; Acroporidae)
    • Wei NWV, Wallace CC, Dai CF, Pillay KRM, Chen CA (2006) Analyses of the ribosomal internal transcribed spacers (ITS) and the 5. 8S gene indicate that extremely high rDNA Heterogeneity is a unique feature in the Scleractinian coral genus Acropora (Scleractinia; Acroporidae). Zool Stud 45(3): 404-418.
    • (2006) Zool Stud , vol.45 , Issue.3 , pp. 404-418
    • Wei, N.W.V.1    Wallace, C.C.2    Dai, C.F.3    Pillay, K.R.M.4    Chen, C.A.5
  • 39
    • 0031463838 scopus 로고    scopus 로고
    • Phylogeny of Lycopodiaceae (Lycopsida) and the relationships of Phylloglossum drummondii Kunze based on rbcL sequences
    • Wikström N, Kenrick P (1997) Phylogeny of Lycopodiaceae (Lycopsida) and the relationships of Phylloglossum drummondii Kunze based on rbcL sequences. Int J Plant Sci 158: 862-871.
    • (1997) Int J Plant Sci , vol.158 , pp. 862-871
    • Wikström, N.1    Kenrick, P.2
  • 40
    • 0034776389 scopus 로고    scopus 로고
    • Evolution of Lycopodiaceae (Lycopsida): estimating divergence times from rbcL gene sequences by use of nonparametric rate smoothing
    • Wikstrom N, Kenrick P (2001) Evolution of Lycopodiaceae (Lycopsida): estimating divergence times from rbcL gene sequences by use of nonparametric rate smoothing. Mol Phylogenet Evol 19: 177-186.
    • (2001) Mol Phylogenet Evol , vol.19 , pp. 177-186
    • Wikstrom, N.1    Kenrick, P.2
  • 41
    • 23744445592 scopus 로고    scopus 로고
    • Incongruence between primary sequence data and the distribution of a mitochondrial atp 1 group II intron among ferns and horsetails
    • Wikström N, Pryer KM (2005) Incongruence between primary sequence data and the distribution of a mitochondrial atp 1 group II intron among ferns and horsetails. Mol Phylogenet Evol 36: 484-493.
    • (2005) Mol Phylogenet Evol , vol.36 , pp. 484-493
    • Wikström, N.1    Pryer, K.M.2
  • 42
    • 0030805226 scopus 로고    scopus 로고
    • Evaluation of atpB nucleotide sequences for phylogenetic studies of ferns and other pteridophytes
    • Wolf PG (1997) Evaluation of atpB nucleotide sequences for phylogenetic studies of ferns and other pteridophytes. Am J Bot 84(10): 1429-1440.
    • (1997) Am J Bot , vol.84 , Issue.10 , pp. 1429-1440
    • Wolf, P.G.1
  • 43
    • 0033004740 scopus 로고    scopus 로고
    • Estimation of the transition/transversion rate bias and species sampling
    • Yang Z, Yoder AD (1999) Estimation of the transition/transversion rate bias and species sampling. J Mol Evol 48: 274-283.
    • (1999) J Mol Evol , vol.48 , pp. 274-283
    • Yang, Z.1    Yoder, A.D.2
  • 44
    • 45749154614 scopus 로고    scopus 로고
    • Phylogenetic relationships of species in Pseudoroegneria (Poaceae: Triticeae) and related genera inferred from nuclear rDNA ITS (internal transcribed spacer) sequences
    • Yu H, Fan X, Zhang C, Ding C, Wang X et al (2008) Phylogenetic relationships of species in Pseudoroegneria (Poaceae: Triticeae) and related genera inferred from nuclear rDNA ITS (internal transcribed spacer) sequences. Biologia 63(4): 498-505.
    • (2008) Biologia , vol.63 , Issue.4 , pp. 498-505
    • Yu, H.1    Fan, X.2    Zhang, C.3    Ding, C.4    Wang, X.5


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